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The map label for this gene is ugpB [H]

Identifier: 34499111

GI number: 34499111

Start: 3954921

End: 3956249

Strand: Reverse

Name: ugpB [H]

Synonym: CV_3656

Alternate gene names: 34499111

Gene position: 3956249-3954921 (Counterclockwise)

Preceding gene: 34499112

Following gene: 34499110

Centisome position: 83.27

GC content: 65.54

Gene sequence:

>1329_bases
ATGTCCCGAGCCCTGTCCCTCACCTTACGCCGCGCCGCCGCGCTCGCGCCGCTGACGCTGGCCTTGTCCCTGCCGGCGCA
GGCCGCCACCGAAATCCAGTTCTGGCATTCGATGGAAGGCTCGCTGGGCGACCGCGTCAACGCCATCGCCGCCCAGTTCA
ACGCCAGCCAGAAGGACTACAAGGTGGTGCCGGTGTACAAGGGCCAGTACGACGAGTCGCTGGCCGCGGCCATCGCCGCC
TACCGCAGCGGCAACGCGCCCGCCGTCGTCCAGGTGTTCGAAGTGGGCACCGCCACCATGATCCAGGCCAAGAAAGCGGT
CAAGCCGGTATACCAGATGATGGCCGACGCCGGCGAAAAGCTGGACGAGAAAGCCTTCATCCCGGCGGTGGCCAGCTATT
ACAGCGACGCCAAGACCGGCCATCTGCTGTCCTTGCCGTTCAATAGCTCCACCCCGGTGCTGTACTACAACAAGGACGCG
TTCAAGAAGGCAGGCCTGCCGGACGCGCCGCCCAAGACCTGGCCGGAACTGGCCGCCGCCGCCGCCAAGCTGAAGGCTTC
CGGCATGCGTTGCGGCTACAGCACCGGCTGGCAGGGCTGGGTGCAGCTGGAGAACTTCAGCGCCTGGCACAGCCTGCCGT
TCGCCAGCCAGGACAACGGCTTCGGCGGCGGTAACGCCACGCTGCAGTTCAACGGCCCGGTCCAGGTCAAGCACATCGAA
TTCCTGGCCAAGATGGCCAAGGACGGCACCTTCAGCTACGCCGGCCGCAAGGACGAGGCGACGCTGAAGTTCTACAGCGG
CGAATGCGGCATCATGACCGGCAGCTCCGGCTCGCTGGCCAATATCCGCAAGAACGCCAAGTTCGCCTTCGGCATGGGCA
TGATGCCCTACGATCCGGCGGTGAAGGGCGCGCCGCAGAATGCCTTGATCGGCGGCGCCAGCCTGTGGGTGATGGCCGGC
AAGTCCCCGGCCGAGTACAAGGGCGTGGCCCGCTTCTTCAAGATGCTGGTCTCGCCGGAAGTGATGGCCAAATGGCACCA
GGACACCGGCTACCTGCCGGTGGTGAACGCCGCCTATGATTTGTCGCGCAAGCAGGGCTTCTACGACAAGAACCCGGGCG
CCGACATCGCCACCCGCCAGATGCAGAACAAGCCGCCCAAGTCCTATACCCGCGGCCTGCGCCTGGGCTACATGCCGCAG
ATCCGCACGGTGATGGACGAAGAGCTGGAAGAAGTGTGGACCGGCAAGAAGAGCGCCAAGGCCGCGCTGGACAGCGCCGT
GCTGCGCGGCAACGAGCTGCTGCGCCGTTTCGAGAAAACCGCCAATTGA

Upstream 100 bases:

>100_bases
TGCAAATTTAATGTCATATTATCGTAACGATACTGTCATTTTGTCCGGCCACAATCCGCCGCGTGAATGCCAGCCGCCAT
AACGATAAATGGAGAAGCCG

Downstream 100 bases:

>100_bases
TCCATCCGGAAACGGGCGCGCCGCGAGGCCGCCCGTTTTTCTCGATAGAGTCCACGCATGCAGAATCGCATTCATTTTTC
CAATCGCTGGCTGGGTTTCG

Product: glycerol-3-phosphate ABC transporter substrate-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 442; Mature: 441

Protein sequence:

>442_residues
MSRALSLTLRRAAALAPLTLALSLPAQAATEIQFWHSMEGSLGDRVNAIAAQFNASQKDYKVVPVYKGQYDESLAAAIAA
YRSGNAPAVVQVFEVGTATMIQAKKAVKPVYQMMADAGEKLDEKAFIPAVASYYSDAKTGHLLSLPFNSSTPVLYYNKDA
FKKAGLPDAPPKTWPELAAAAAKLKASGMRCGYSTGWQGWVQLENFSAWHSLPFASQDNGFGGGNATLQFNGPVQVKHIE
FLAKMAKDGTFSYAGRKDEATLKFYSGECGIMTGSSGSLANIRKNAKFAFGMGMMPYDPAVKGAPQNALIGGASLWVMAG
KSPAEYKGVARFFKMLVSPEVMAKWHQDTGYLPVVNAAYDLSRKQGFYDKNPGADIATRQMQNKPPKSYTRGLRLGYMPQ
IRTVMDEELEEVWTGKKSAKAALDSAVLRGNELLRRFEKTAN

Sequences:

>Translated_442_residues
MSRALSLTLRRAAALAPLTLALSLPAQAATEIQFWHSMEGSLGDRVNAIAAQFNASQKDYKVVPVYKGQYDESLAAAIAA
YRSGNAPAVVQVFEVGTATMIQAKKAVKPVYQMMADAGEKLDEKAFIPAVASYYSDAKTGHLLSLPFNSSTPVLYYNKDA
FKKAGLPDAPPKTWPELAAAAAKLKASGMRCGYSTGWQGWVQLENFSAWHSLPFASQDNGFGGGNATLQFNGPVQVKHIE
FLAKMAKDGTFSYAGRKDEATLKFYSGECGIMTGSSGSLANIRKNAKFAFGMGMMPYDPAVKGAPQNALIGGASLWVMAG
KSPAEYKGVARFFKMLVSPEVMAKWHQDTGYLPVVNAAYDLSRKQGFYDKNPGADIATRQMQNKPPKSYTRGLRLGYMPQ
IRTVMDEELEEVWTGKKSAKAALDSAVLRGNELLRRFEKTAN
>Mature_441_residues
SRALSLTLRRAAALAPLTLALSLPAQAATEIQFWHSMEGSLGDRVNAIAAQFNASQKDYKVVPVYKGQYDESLAAAIAAY
RSGNAPAVVQVFEVGTATMIQAKKAVKPVYQMMADAGEKLDEKAFIPAVASYYSDAKTGHLLSLPFNSSTPVLYYNKDAF
KKAGLPDAPPKTWPELAAAAAKLKASGMRCGYSTGWQGWVQLENFSAWHSLPFASQDNGFGGGNATLQFNGPVQVKHIEF
LAKMAKDGTFSYAGRKDEATLKFYSGECGIMTGSSGSLANIRKNAKFAFGMGMMPYDPAVKGAPQNALIGGASLWVMAGK
SPAEYKGVARFFKMLVSPEVMAKWHQDTGYLPVVNAAYDLSRKQGFYDKNPGADIATRQMQNKPPKSYTRGLRLGYMPQI
RTVMDEELEEVWTGKKSAKAALDSAVLRGNELLRRFEKTAN

Specific function: sn-glycerol-3-phosphate and glycerophosphoryl diester- binding protein interacts with the binding protein-dependent transport system ugpACE [H]

COG id: COG1653

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 1 family [H]

Homologues:

Organism=Escherichia coli, GI1789862, Length=416, Percent_Identity=67.3076923076923, Blast_Score=602, Evalue=1e-173,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059
- InterPro:   IPR006061 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 47959; Mature: 47828

Theoretical pI: Translated: 9.94; Mature: 9.94

Prosite motif: PS01037 SBP_BACTERIAL_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRALSLTLRRAAALAPLTLALSLPAQAATEIQFWHSMEGSLGDRVNAIAAQFNASQKDY
CCCHHHHHHHHHHHHHHEEEEEECCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCE
KVVPVYKGQYDESLAAAIAAYRSGNAPAVVQVFEVGTATMIQAKKAVKPVYQMMADAGEK
EEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHH
LDEKAFIPAVASYYSDAKTGHLLSLPFNSSTPVLYYNKDAFKKAGLPDAPPKTWPELAAA
HHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCEEEECCHHHHHCCCCCCCCCCHHHHHHH
AAKLKASGMRCGYSTGWQGWVQLENFSAWHSLPFASQDNGFGGGNATLQFNGPVQVKHIE
HHHHHHCCCCCCCCCCCCCEEEEECCCHHHCCCCCCCCCCCCCCCEEEEECCCEEEHHHH
FLAKMAKDGTFSYAGRKDEATLKFYSGECGIMTGSSGSLANIRKNAKFAFGMGMMPYDPA
HHHHHHCCCCEEECCCCCCCEEEEECCCCEEEECCCCCHHHHHHCCEEEEECCCCCCCCC
VKGAPQNALIGGASLWVMAGKSPAEYKGVARFFKMLVSPEVMAKWHQDTGYLPVVNAAYD
CCCCCCCCEECCCEEEEEECCCCHHHHHHHHHHHHHHCHHHHHHHHCCCCCCEEEHHHHH
LSRKQGFYDKNPGADIATRQMQNKPPKSYTRGLRLGYMPQIRTVMDEELEEVWTGKKSAK
HHHHCCCCCCCCCCCHHHHHHHCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCHHHH
AALDSAVLRGNELLRRFEKTAN
HHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SRALSLTLRRAAALAPLTLALSLPAQAATEIQFWHSMEGSLGDRVNAIAAQFNASQKDY
CCHHHHHHHHHHHHHHEEEEEECCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCE
KVVPVYKGQYDESLAAAIAAYRSGNAPAVVQVFEVGTATMIQAKKAVKPVYQMMADAGEK
EEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHH
LDEKAFIPAVASYYSDAKTGHLLSLPFNSSTPVLYYNKDAFKKAGLPDAPPKTWPELAAA
HHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCEEEECCHHHHHCCCCCCCCCCHHHHHHH
AAKLKASGMRCGYSTGWQGWVQLENFSAWHSLPFASQDNGFGGGNATLQFNGPVQVKHIE
HHHHHHCCCCCCCCCCCCCEEEEECCCHHHCCCCCCCCCCCCCCCEEEEECCCEEEHHHH
FLAKMAKDGTFSYAGRKDEATLKFYSGECGIMTGSSGSLANIRKNAKFAFGMGMMPYDPA
HHHHHHCCCCEEECCCCCCCEEEEECCCCEEEECCCCCHHHHHHCCEEEEECCCCCCCCC
VKGAPQNALIGGASLWVMAGKSPAEYKGVARFFKMLVSPEVMAKWHQDTGYLPVVNAAYD
CCCCCCCCEECCCEEEEEECCCCHHHHHHHHHHHHHHCHHHHHHHHCCCCCCEEEHHHHH
LSRKQGFYDKNPGADIATRQMQNKPPKSYTRGLRLGYMPQIRTVMDEELEEVWTGKKSAK
HHHHCCCCCCCCCCCHHHHHHHCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCHHHH
AALDSAVLRGNELLRRFEKTAN
HHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA