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The map label for this gene is yeaM [H]

Identifier: 34499086

GI number: 34499086

Start: 3932741

End: 3933484

Strand: Reverse

Name: yeaM [H]

Synonym: CV_3631

Alternate gene names: 34499086

Gene position: 3933484-3932741 (Counterclockwise)

Preceding gene: 34499090

Following gene: 34499085

Centisome position: 82.79

GC content: 72.58

Gene sequence:

>744_bases
ATGGAGCGAGCCATTCTGCCGGGACTGGCGGTGGCGGCGTTGCGGCGCGGCGTCGGCGACCATACCGCGCGCCACAGCCA
TGCGGAGGGACAGCTGGCCTGGGCCAGCGCAGGCGCGTTGGAGCTGGACGCGGATGGCCGGCGCATCCTGCTGCCCGGCG
GCTGCGTCGGCTGGATTCCGCCGGGCATGCCGCATGGCGCGCATTACCATGGCGAGTTGCGCGGCTGGAGCCTGCAGCTG
GAGGCGGCCTGCTTGCCGGCCTTGCCGCCGGACCTGCGCGTGTGGCGGGCTTCGCCGTTGCTGCAAGGCGTGTTCCAGCG
CCTGGGCGACTGGCCGGAGCAGGCCGGTCCGGACGCGGCCAGGCGGCTGGTCGCCGTGCTGGCGGACGAGTTGGCCTGGG
CCGAGCCTTATCCGGCCAGCCTGGCCTGGCCTTCCCATCCGGCGCTGCGCAAACTGGCCGAGGCCCTGTCGCGCGATCCG
TCTCTGGATTGGGATCTTGAGCGCTGGGCGCGACAGATCGGCATGTCGAGGCGCAGCCTGATCCGCCATTTTCGCGCCGA
GACCGGCATGGGCGTGGCCGAGTGGCGCGAGCGGCTGCGCATGCTGCGGGCCAGGGCGCTGCTGGCCGAGGGGCGCTCGG
TCGGCTATTGCGCGGCGGAGCTGGGCTATGCCGGCAGCAGCGCCTTCATCGTCGCCTTCCGCCGCTGTTTCGGCGAGACG
CCGGGACGCTACTTGTCGGCATGA

Upstream 100 bases:

>100_bases
TTCATGGCCAACTCCTTGCGTGGAATGAGCGCCCAGTATCGCGCTGGCGGGATTGGCCTGCTTTCCATATAGTGCCAATG
AATATCTATAAAGGGCCAAT

Downstream 100 bases:

>100_bases
AAATCATATTGCTATGCACAATAGTTATTTGGCATGATGGTGTGCCGGGCCTGGCGGCGATCCCGCCTGTGCCCATCAAC
TCAGGAGACCATCATGTCCC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 247; Mature: 247

Protein sequence:

>247_residues
MERAILPGLAVAALRRGVGDHTARHSHAEGQLAWASAGALELDADGRRILLPGGCVGWIPPGMPHGAHYHGELRGWSLQL
EAACLPALPPDLRVWRASPLLQGVFQRLGDWPEQAGPDAARRLVAVLADELAWAEPYPASLAWPSHPALRKLAEALSRDP
SLDWDLERWARQIGMSRRSLIRHFRAETGMGVAEWRERLRMLRARALLAEGRSVGYCAAELGYAGSSAFIVAFRRCFGET
PGRYLSA

Sequences:

>Translated_247_residues
MERAILPGLAVAALRRGVGDHTARHSHAEGQLAWASAGALELDADGRRILLPGGCVGWIPPGMPHGAHYHGELRGWSLQL
EAACLPALPPDLRVWRASPLLQGVFQRLGDWPEQAGPDAARRLVAVLADELAWAEPYPASLAWPSHPALRKLAEALSRDP
SLDWDLERWARQIGMSRRSLIRHFRAETGMGVAEWRERLRMLRARALLAEGRSVGYCAAELGYAGSSAFIVAFRRCFGET
PGRYLSA
>Mature_247_residues
MERAILPGLAVAALRRGVGDHTARHSHAEGQLAWASAGALELDADGRRILLPGGCVGWIPPGMPHGAHYHGELRGWSLQL
EAACLPALPPDLRVWRASPLLQGVFQRLGDWPEQAGPDAARRLVAVLADELAWAEPYPASLAWPSHPALRKLAEALSRDP
SLDWDLERWARQIGMSRRSLIRHFRAETGMGVAEWRERLRMLRARALLAEGRSVGYCAAELGYAGSSAFIVAFRRCFGET
PGRYLSA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788091, Length=224, Percent_Identity=31.25, Blast_Score=110, Evalue=9e-26,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding [H]

EC number: NA

Molecular weight: Translated: 27088; Mature: 27088

Theoretical pI: Translated: 8.96; Mature: 8.96

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MERAILPGLAVAALRRGVGDHTARHSHAEGQLAWASAGALELDADGRRILLPGGCVGWIP
CCCCCCCHHHHHHHHHCCCHHHHHCCCCCCCEEEECCCCEEECCCCCEEEECCCCCCCCC
PGMPHGAHYHGELRGWSLQLEAACLPALPPDLRVWRASPLLQGVFQRLGDWPEQAGPDAA
CCCCCCCCCCCCCCCCEEEECCHHCCCCCCCHHHHHCCHHHHHHHHHHCCCCCCCCHHHH
RRLVAVLADELAWAEPYPASLAWPSHPALRKLAEALSRDPSLDWDLERWARQIGMSRRSL
HHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHCCHHHHH
IRHFRAETGMGVAEWRERLRMLRARALLAEGRSVGYCAAELGYAGSSAFIVAFRRCFGET
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCHHHHHHHHHHHCCC
PGRYLSA
CCCCCCC
>Mature Secondary Structure
MERAILPGLAVAALRRGVGDHTARHSHAEGQLAWASAGALELDADGRRILLPGGCVGWIP
CCCCCCCHHHHHHHHHCCCHHHHHCCCCCCCEEEECCCCEEECCCCCEEEECCCCCCCCC
PGMPHGAHYHGELRGWSLQLEAACLPALPPDLRVWRASPLLQGVFQRLGDWPEQAGPDAA
CCCCCCCCCCCCCCCCEEEECCHHCCCCCCCHHHHHCCHHHHHHHHHHCCCCCCCCHHHH
RRLVAVLADELAWAEPYPASLAWPSHPALRKLAEALSRDPSLDWDLERWARQIGMSRRSL
HHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHCCHHHHH
IRHFRAETGMGVAEWRERLRMLRARALLAEGRSVGYCAAELGYAGSSAFIVAFRRCFGET
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCHHHHHHHHHHHCCC
PGRYLSA
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]