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The map label for this gene is rodZ [H]

Identifier: 34498994

GI number: 34498994

Start: 3847755

End: 3848690

Strand: Reverse

Name: rodZ [H]

Synonym: CV_3539

Alternate gene names: 34498994

Gene position: 3848690-3847755 (Counterclockwise)

Preceding gene: 34498995

Following gene: 34498993

Centisome position: 81.01

GC content: 67.52

Gene sequence:

>936_bases
ATGGAAGAAAAACACGAATATCATGACGCGCCGGGGCACGGCGACATCGGCGCCACCTTGAAAGCCGCTCGCGAGGCGGC
CGGTTTGGGCCTGGGGGAGGTAGCGGACAGGCTGAAACTGTCTCTCAGGCAGCTGGAGGCGATAGAGCGCGACGATTTCG
ACGCGTTGCCAGGCGCCACCTTTGTCCGCGGTTTTGTTCGCAATTACGCCAGGTTTCTGGAGGTGGATCCCGAGCCGCTG
ATGAAGGCGCTGGAGCAGCATTTCCCGTCTGCGGTCAATGACGTGGCCAATCTGGTCAAGGGCACGGCGGCGCGCGAACA
GGCGCCTGAACCGGCGGAAGCCGTCGAGGAGGTTTCCGGGGGCGGAGGCAAGTGGGTGATCCTGCTGTTGCTGGCCGCGG
CGGTGGCGGGCGGCGGTTACTGGTATGCCAGCCGCGACAGTTCTCCGGAGAAGCCGGCCGAGCATGCGGCCAACGAACTG
GCGCCGATGCTGACCGAGCAGTCGTCCGCGCCGGCCGCCAGCGCGGCAGCCGCTTCCGAGCCGGCCAAGCCGGTTCAGGC
CGCTAGGCCGGCCTCCGTTCCGACTGCGGCCGCGGCGAAGCCGGCCGCATCCGCCGCCCAAGCCGCAGCCAAGCCTGTGG
CGAGCGCTCCGGCCAAGGCGGCCAAGGCGCAGCCAGCCAGCGCGCCGCAGTCGCAGGGCACGGACAAGGTCAGCGTCAAC
GTCAAGGACGCGGCCTGGGTATCGGTGCAGGACGCCGACGGCCGCAGGCTGATTTACAAGGTGATGCAGCCGGGCGATCC
GGCCGAGGTGACCGGCACCGCGCCGTTCAAGGTGGTGATAGGCAACGCCAGCCAGGTGGAGCTGAGCTACAACGGCAAGC
CGGTGGACCTGGCCGACAAGATCAAGGGCACCACCGCCAAGATTCAACTCAAGTGA

Upstream 100 bases:

>100_bases
AAACCGGTAACGCCGCGCTGGAGCGCGCGTGCGGAAATGAACTAAAGAACCGGTTTCCGGACTCTAGGGAAACACAACTG
CTGTTGAGTGGAAGCTGAGG

Downstream 100 bases:

>100_bases
TGCAGGGTAGCGAATGGATAGCGTGAACATCGCGCGCCGCCCCACCCGCCTGGTGCGGGTGGGGCATGTTTTGGTGGGAT
CGGACGCGCCGGTGATGGTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 311; Mature: 311

Protein sequence:

>311_residues
MEEKHEYHDAPGHGDIGATLKAAREAAGLGLGEVADRLKLSLRQLEAIERDDFDALPGATFVRGFVRNYARFLEVDPEPL
MKALEQHFPSAVNDVANLVKGTAAREQAPEPAEAVEEVSGGGGKWVILLLLAAAVAGGGYWYASRDSSPEKPAEHAANEL
APMLTEQSSAPAASAAAASEPAKPVQAARPASVPTAAAAKPAASAAQAAAKPVASAPAKAAKAQPASAPQSQGTDKVSVN
VKDAAWVSVQDADGRRLIYKVMQPGDPAEVTGTAPFKVVIGNASQVELSYNGKPVDLADKIKGTTAKIQLK

Sequences:

>Translated_311_residues
MEEKHEYHDAPGHGDIGATLKAAREAAGLGLGEVADRLKLSLRQLEAIERDDFDALPGATFVRGFVRNYARFLEVDPEPL
MKALEQHFPSAVNDVANLVKGTAAREQAPEPAEAVEEVSGGGGKWVILLLLAAAVAGGGYWYASRDSSPEKPAEHAANEL
APMLTEQSSAPAASAAAASEPAKPVQAARPASVPTAAAAKPAASAAQAAAKPVASAPAKAAKAQPASAPQSQGTDKVSVN
VKDAAWVSVQDADGRRLIYKVMQPGDPAEVTGTAPFKVVIGNASQVELSYNGKPVDLADKIKGTTAKIQLK
>Mature_311_residues
MEEKHEYHDAPGHGDIGATLKAAREAAGLGLGEVADRLKLSLRQLEAIERDDFDALPGATFVRGFVRNYARFLEVDPEPL
MKALEQHFPSAVNDVANLVKGTAAREQAPEPAEAVEEVSGGGGKWVILLLLAAAVAGGGYWYASRDSSPEKPAEHAANEL
APMLTEQSSAPAASAAAASEPAKPVQAARPASVPTAAAAKPAASAAQAAAKPVASAPAKAAKAQPASAPQSQGTDKVSVN
VKDAAWVSVQDADGRRLIYKVMQPGDPAEVTGTAPFKVVIGNASQVELSYNGKPVDLADKIKGTTAKIQLK

Specific function: Cytoskeletal protein that is involved in cell-shape control through regulation of the length of the long axis [H]

COG id: COG1426

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein. Note=Forms helical filaments along the long axis of the cell (By similarity) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788864, Length=322, Percent_Identity=25.776397515528, Blast_Score=91, Evalue=1e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001387
- InterPro:   IPR010982 [H]

Pfam domain/function: PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 32121; Mature: 32121

Theoretical pI: Translated: 5.74; Mature: 5.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEEKHEYHDAPGHGDIGATLKAAREAAGLGLGEVADRLKLSLRQLEAIERDDFDALPGAT
CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH
FVRGFVRNYARFLEVDPEPLMKALEQHFPSAVNDVANLVKGTAAREQAPEPAEAVEEVSG
HHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCC
GGGKWVILLLLAAAVAGGGYWYASRDSSPEKPAEHAANELAPMLTEQSSAPAASAAAASE
CCCHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHCCC
PAKPVQAARPASVPTAAAAKPAASAAQAAAKPVASAPAKAAKAQPASAPQSQGTDKVSVN
CCCCHHHCCCCCCCCHHHCCCHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCEEEEE
VKDAAWVSVQDADGRRLIYKVMQPGDPAEVTGTAPFKVVIGNASQVELSYNGKPVDLADK
ECCCEEEEEECCCCCEEHHHHHCCCCCCCCCCCCCEEEEECCCEEEEEEECCCCCCHHHH
IKGTTAKIQLK
CCCCCEEEEEC
>Mature Secondary Structure
MEEKHEYHDAPGHGDIGATLKAAREAAGLGLGEVADRLKLSLRQLEAIERDDFDALPGAT
CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH
FVRGFVRNYARFLEVDPEPLMKALEQHFPSAVNDVANLVKGTAAREQAPEPAEAVEEVSG
HHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCC
GGGKWVILLLLAAAVAGGGYWYASRDSSPEKPAEHAANELAPMLTEQSSAPAASAAAASE
CCCHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHCCC
PAKPVQAARPASVPTAAAAKPAASAAQAAAKPVASAPAKAAKAQPASAPQSQGTDKVSVN
CCCCHHHCCCCCCCCHHHCCCHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCEEEEE
VKDAAWVSVQDADGRRLIYKVMQPGDPAEVTGTAPFKVVIGNASQVELSYNGKPVDLADK
ECCCEEEEEECCCCCEEHHHHHCCCCCCCCCCCCCEEEEECCCEEEEEEECCCCCCHHHH
IKGTTAKIQLK
CCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA