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The map label for this gene is ydgJ [H]

Identifier: 34498977

GI number: 34498977

Start: 3818863

End: 3819906

Strand: Reverse

Name: ydgJ [H]

Synonym: CV_3522

Alternate gene names: 34498977

Gene position: 3819906-3818863 (Counterclockwise)

Preceding gene: 34498978

Following gene: 34498975

Centisome position: 80.4

GC content: 66.28

Gene sequence:

>1044_bases
ATGACAAGACGACTGAAAGCGGGGTTGCTGGGCTATGGCTATGCCGGCGCGACGTTTCATGCCCCCTTATTGAGTGCGAC
CGCCCGCGTGGATTTGGCTGCCGTGGCGTCCAGCAGGCCGGAGCAGGTTTTGCGGAACTGGCCGCAGGCGAGAGTGCTGC
CGGATGCCGAGGCGTTGCTTGCTGAGGGGGAGATCGACTTGGTGGTGATCGCCACGCCGAACGACAGCCACTTCCCATTG
GCGCAGGCGGCATTGCGAGCCGGCAAGCACGTGGTGGTCGACAAGCCCTTCGCTCTGGATGCCGCGCAGGCTCGGCAATT
GATGGAAGAGGCCGAGCAGGCCGGCCGGCTGTTGTCGGTGTTCCATAACCGGCGCTGGGATGCGGACTTTCTCGCAGTGC
GCCAGTTGCTGGATGAAGGGGCGCTGGGTCGGGTCGCGCATTTCGAGTCGCACTTCGACCGCTATCGTCCTCAGGTTCGG
CAGCGCTGGCGCGAGTCGTCGGCGCCGGGGGCCGGCTTGTGGTTCGATCTGGGGCCGCATCTGCTGGACCAAACGTTGCA
GCTGTTCGGGCTGCCGCAGGCGCTGAGCTTGGAGCTGGCGGAGCTGCGGGATGGGGCGGTTTGCGACGACTGGTTTCATG
CGGCGCTGCGCTATCCGGACAAGCGGGTGATCCTGCATGGCAGCGCGCTGGTGGCTGACGCGGGACCGCGCTTCATCATT
CACGGCACGCAGGGCAGCTTCAGCAAATACGGACTGGATCCGCAGGAGGATGCGCTTAAGGGAGGCGTGCGCCCAGGGGG
AGAAGGCTGGGGCGTGGACCCGCAGCCTGGCCGGCTGTTGCTGGCGGATGCCGGGGAGAAAGTATTTTCCGGACCTGCGG
GCGATTACCTCCGCTACTACGCCGGCGTGCGCGACGCCATCCTGCATGGCGGGGCGAACCCTGTGCCGGCCGAGGAGGCA
TGGCAGGTGATGGCCTTGTTGGAACTGGGCAAGCGCAGCGCGATGCTGCAATGCTGGCAGCCGGTGCCGGACAGCCTGCG
CTGA

Upstream 100 bases:

>100_bases
GCTTCATGATCCCGCTCTCCAAGAAAGCCTCGCTTCTCGCGGGGTTGGGCATTCAGCATCCGCAACGTATCATGTGGGCT
TGGTCGGAGGAGGAGGCAAG

Downstream 100 bases:

>100_bases
CCGGCAAGTCTCAGCTCTTCTTCTTTTTGCCGGCGTCCGCCTGCCGGGTGGCATCGGCCACGTCTTCGGCGCTGACTGCG
GCTTTCTGGTCCGGCGCGAT

Product: oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 347; Mature: 346

Protein sequence:

>347_residues
MTRRLKAGLLGYGYAGATFHAPLLSATARVDLAAVASSRPEQVLRNWPQARVLPDAEALLAEGEIDLVVIATPNDSHFPL
AQAALRAGKHVVVDKPFALDAAQARQLMEEAEQAGRLLSVFHNRRWDADFLAVRQLLDEGALGRVAHFESHFDRYRPQVR
QRWRESSAPGAGLWFDLGPHLLDQTLQLFGLPQALSLELAELRDGAVCDDWFHAALRYPDKRVILHGSALVADAGPRFII
HGTQGSFSKYGLDPQEDALKGGVRPGGEGWGVDPQPGRLLLADAGEKVFSGPAGDYLRYYAGVRDAILHGGANPVPAEEA
WQVMALLELGKRSAMLQCWQPVPDSLR

Sequences:

>Translated_347_residues
MTRRLKAGLLGYGYAGATFHAPLLSATARVDLAAVASSRPEQVLRNWPQARVLPDAEALLAEGEIDLVVIATPNDSHFPL
AQAALRAGKHVVVDKPFALDAAQARQLMEEAEQAGRLLSVFHNRRWDADFLAVRQLLDEGALGRVAHFESHFDRYRPQVR
QRWRESSAPGAGLWFDLGPHLLDQTLQLFGLPQALSLELAELRDGAVCDDWFHAALRYPDKRVILHGSALVADAGPRFII
HGTQGSFSKYGLDPQEDALKGGVRPGGEGWGVDPQPGRLLLADAGEKVFSGPAGDYLRYYAGVRDAILHGGANPVPAEEA
WQVMALLELGKRSAMLQCWQPVPDSLR
>Mature_346_residues
TRRLKAGLLGYGYAGATFHAPLLSATARVDLAAVASSRPEQVLRNWPQARVLPDAEALLAEGEIDLVVIATPNDSHFPLA
QAALRAGKHVVVDKPFALDAAQARQLMEEAEQAGRLLSVFHNRRWDADFLAVRQLLDEGALGRVAHFESHFDRYRPQVRQ
RWRESSAPGAGLWFDLGPHLLDQTLQLFGLPQALSLELAELRDGAVCDDWFHAALRYPDKRVILHGSALVADAGPRFIIH
GTQGSFSKYGLDPQEDALKGGVRPGGEGWGVDPQPGRLLLADAGEKVFSGPAGDYLRYYAGVRDAILHGGANPVPAEEAW
QVMALLELGKRSAMLQCWQPVPDSLR

Specific function: Unknown

COG id: COG0673

COG function: function code R; Predicted dehydrogenases and related proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gfo/idh/mocA family [H]

Homologues:

Organism=Escherichia coli, GI87081947, Length=338, Percent_Identity=54.4378698224852, Blast_Score=373, Evalue=1e-104,
Organism=Escherichia coli, GI1789848, Length=339, Percent_Identity=35.1032448377581, Blast_Score=203, Evalue=2e-53,
Organism=Escherichia coli, GI1787574, Length=208, Percent_Identity=26.9230769230769, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI87082405, Length=279, Percent_Identity=25.089605734767, Blast_Score=69, Evalue=6e-13,
Organism=Drosophila melanogaster, GI24581117, Length=290, Percent_Identity=25.1724137931034, Blast_Score=68, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR000683
- InterPro:   IPR004104 [H]

Pfam domain/function: PF01408 GFO_IDH_MocA; PF02894 GFO_IDH_MocA_C [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 37906; Mature: 37775

Theoretical pI: Translated: 6.44; Mature: 6.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRRLKAGLLGYGYAGATFHAPLLSATARVDLAAVASSRPEQVLRNWPQARVLPDAEALL
CCCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCHHHHH
AEGEIDLVVIATPNDSHFPLAQAALRAGKHVVVDKPFALDAAQARQLMEEAEQAGRLLSV
HCCCEEEEEEECCCCCCCHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHH
FHNRRWDADFLAVRQLLDEGALGRVAHFESHFDRYRPQVRQRWRESSAPGAGLWFDLGPH
HHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCHHHHHHHHHCCCCCCCEEHHCCHH
LLDQTLQLFGLPQALSLELAELRDGAVCDDWFHAALRYPDKRVILHGSALVADAGPRFII
HHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEEECCEEEECCCCEEEE
HGTQGSFSKYGLDPQEDALKGGVRPGGEGWGVDPQPGRLLLADAGEKVFSGPAGDYLRYY
ECCCCCHHHCCCCCHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCHHHCCCCHHHHHHH
AGVRDAILHGGANPVPAEEAWQVMALLELGKRSAMLQCWQPVPDSLR
HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
TRRLKAGLLGYGYAGATFHAPLLSATARVDLAAVASSRPEQVLRNWPQARVLPDAEALL
CCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCHHHHH
AEGEIDLVVIATPNDSHFPLAQAALRAGKHVVVDKPFALDAAQARQLMEEAEQAGRLLSV
HCCCEEEEEEECCCCCCCHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHH
FHNRRWDADFLAVRQLLDEGALGRVAHFESHFDRYRPQVRQRWRESSAPGAGLWFDLGPH
HHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCHHHHHHHHHCCCCCCCEEHHCCHH
LLDQTLQLFGLPQALSLELAELRDGAVCDDWFHAALRYPDKRVILHGSALVADAGPRFII
HHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEEECCEEEECCCCEEEE
HGTQGSFSKYGLDPQEDALKGGVRPGGEGWGVDPQPGRLLLADAGEKVFSGPAGDYLRYY
ECCCCCHHHCCCCCHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCHHHCCCCHHHHHHH
AGVRDAILHGGANPVPAEEAWQVMALLELGKRSAMLQCWQPVPDSLR
HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]