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The map label for this gene is yciR [C]

Identifier: 34498882

GI number: 34498882

Start: 3720597

End: 3722585

Strand: Reverse

Name: yciR [C]

Synonym: CV_3427

Alternate gene names: 34498882

Gene position: 3722585-3720597 (Counterclockwise)

Preceding gene: 34498883

Following gene: 34498881

Centisome position: 78.35

GC content: 68.12

Gene sequence:

>1989_bases
ATGAAGAGCGTACTTTCCTGGCAGGGGGGCAACCTGGAGCTGCTGGAGGCCCTGAGCCTGCCGGTGTGGATTTTCGACAT
CGATCACAGGCGGGTGTTCTGGGCCAATGAGGCCGCGCTGCAGGTCTGGGGGGCGGGCAGCCTGCTGGAATTGCAGACGC
GCGACATGGCGCGCGACATGTCGGTGTCGGTGGCGCAGCGGCTGGCCCAGTATCAGCAGGACTTCGAGCGCGAAGGCGCC
AGCTTTGTCGAAAGCTGGACGCTGTACCCCAATGGCCGCCCCAGCGTGCTCAAGGTGAAATTCCGCGGCATACGGGTGAA
TGGCCGCATGCTGATGTTCTGCGAGGCGCAGAACAGCCTGAGCGCCGATCCGGCGTCCCTGCGCAGCACGGAGGCGCTGC
TGCACACCTCGGTGCTGATCACGCTTTACGACGGCAACGGCGGCGCGCTGTACCGCAACCCGGCCTCACGGGAGCGGGTG
GCGGTGGCGGGCGAAGGCTGGCGCCAGCATTTTGTCCACGACAACGATTGGCAGCAGCTGCGCCAGGGCGTGGCGGCCTG
CGGCGAGGCGCGGCTGCTGGCGCGGGTCAACACCCGCGAGGGCATGCGCTGGCACGAGGTCGCGGCCCGCGCCTGCCGCG
ACGCGGTCACCGGCCAGGACGCGCTGCTGGTCAGCGAGGTGGACATCACCGATCTCAAGCACGCCGAGGCGCGTGCCAGT
TTCCTGGCCAACCACGACGTGCTGACCGGCTTGCCCAACCGTAACGGCATCCGCAGCGAGCTGTTGCCGCATCTGCAGCA
GGCGCTGCGCAATGGCCGCCAAGTGGCGCTGATGTTCATCGACCTGGACCGCTTCAAGAACGTCAACGACTCGCTGGGCC
ACGCCTGCGGCGACGAGCTGCTGATCCGGATGGCCGGCCGGCTGGTCGGCCTGCTCGGCCATGACGAGAAGGCGGCGCGG
CTGGGCGGCGACGAGTTCCTGGTTATGCTGAGCGCGCCGCAGGTGGCGGAACGCGCCGAGGCGCTGGCGCGCCGCATCCT
GCAGGCGCTGTCGGTGCCGATGCGGCTGGAAGGGATGGACGTCGGCGTGTCGGCGTCGATCGGCATCAGCGTCTGCGAAG
GCAGGGAGCTGGACCTTGAGCAGATGATGCGCCATGCCGACCTGGCGATGTACGCCGCCAAGGACGCCGGGCGCAACAAC
CTGATGTTCTTCACGCCGGCGCTGGAGGCGCGCAGCCAGGCGCAGCTGGCGCTGGAGAACGATATCCGCCGCGGCCTGGA
TTGCGGCGAATTCATCGCCTACTTCCAGCCGCGGGTGGACATCGCCAGCGGGCGGGTGGTGGGCGCCGAGGCGCTGGCGC
GCTGGCGGCATCCGCAGCGCGGCCTGCTGATGCCCGATAGCTTCATCCCCATGTGCGAGGACTGCGGCATGGTGATGGAG
CTGGGCAGGCAGATACTGCTCCAGGCCGCCCGCCAGCAGCGGCAATGGCGCGACCGTGGGCTGGATCTGCTGGTGTCGGT
CAACCTGTCCGCCTGCCAGTTCGTCGATCCCGGCCTGCCGGGCCAGGTCGAGCAGATACTGGCCGACAGCGGCTGCCAGC
CGGACCGGTTGGAGCTGGAGATCACCGAGTCGGTGCTGCTGGGGCACGATGAGCAGACCATGAGCACGCTGCAGGCCATG
CGCGCGCTGGGCGTGCGCATCGCGGTCGACGATTTCGGCACCGGCTACTCCAACCTGGCCTACCTGCAGCGCTATCCGCT
GACCTCGCTGAAAATCGACCGTTCCTTCATCGCCGATCTGGACGACAAGCCGGCCATCGCCGAACTGATCACCACCCTGT
GCCGGATGATGGGACTGAACATGGTGGCGGAGGGGGTGGAAACCGAGGCGCAGCTGGCCTGGCTGGCCGAGCGCGGCTGC
CAGGAGTACCAGGGCTATCTGTGCAGCCCGGCGCTGTCGGCCCAGGAGTTTCAGCAACGCTTGCTCTAG

Upstream 100 bases:

>100_bases
CAGGAAATGAGACGTGTTTGCTACAATGGCGGGCGCTCGCGATGGCAGTCGCGCGGCGATTTTTTGATGAATAAATAAAA
GGTTAGCGGCGGACATGCCG

Downstream 100 bases:

>100_bases
GACGGGCCGCGGCGCTTGGGAGGCGCGGCTCCGGCAGGCCGCAGTCTGGGGAGGCTCTCCGGGAGAATGGGCGGACGCAT
CGCCTGGCCGGCGCGACTGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 662; Mature: 662

Protein sequence:

>662_residues
MKSVLSWQGGNLELLEALSLPVWIFDIDHRRVFWANEAALQVWGAGSLLELQTRDMARDMSVSVAQRLAQYQQDFEREGA
SFVESWTLYPNGRPSVLKVKFRGIRVNGRMLMFCEAQNSLSADPASLRSTEALLHTSVLITLYDGNGGALYRNPASRERV
AVAGEGWRQHFVHDNDWQQLRQGVAACGEARLLARVNTREGMRWHEVAARACRDAVTGQDALLVSEVDITDLKHAEARAS
FLANHDVLTGLPNRNGIRSELLPHLQQALRNGRQVALMFIDLDRFKNVNDSLGHACGDELLIRMAGRLVGLLGHDEKAAR
LGGDEFLVMLSAPQVAERAEALARRILQALSVPMRLEGMDVGVSASIGISVCEGRELDLEQMMRHADLAMYAAKDAGRNN
LMFFTPALEARSQAQLALENDIRRGLDCGEFIAYFQPRVDIASGRVVGAEALARWRHPQRGLLMPDSFIPMCEDCGMVME
LGRQILLQAARQQRQWRDRGLDLLVSVNLSACQFVDPGLPGQVEQILADSGCQPDRLELEITESVLLGHDEQTMSTLQAM
RALGVRIAVDDFGTGYSNLAYLQRYPLTSLKIDRSFIADLDDKPAIAELITTLCRMMGLNMVAEGVETEAQLAWLAERGC
QEYQGYLCSPALSAQEFQQRLL

Sequences:

>Translated_662_residues
MKSVLSWQGGNLELLEALSLPVWIFDIDHRRVFWANEAALQVWGAGSLLELQTRDMARDMSVSVAQRLAQYQQDFEREGA
SFVESWTLYPNGRPSVLKVKFRGIRVNGRMLMFCEAQNSLSADPASLRSTEALLHTSVLITLYDGNGGALYRNPASRERV
AVAGEGWRQHFVHDNDWQQLRQGVAACGEARLLARVNTREGMRWHEVAARACRDAVTGQDALLVSEVDITDLKHAEARAS
FLANHDVLTGLPNRNGIRSELLPHLQQALRNGRQVALMFIDLDRFKNVNDSLGHACGDELLIRMAGRLVGLLGHDEKAAR
LGGDEFLVMLSAPQVAERAEALARRILQALSVPMRLEGMDVGVSASIGISVCEGRELDLEQMMRHADLAMYAAKDAGRNN
LMFFTPALEARSQAQLALENDIRRGLDCGEFIAYFQPRVDIASGRVVGAEALARWRHPQRGLLMPDSFIPMCEDCGMVME
LGRQILLQAARQQRQWRDRGLDLLVSVNLSACQFVDPGLPGQVEQILADSGCQPDRLELEITESVLLGHDEQTMSTLQAM
RALGVRIAVDDFGTGYSNLAYLQRYPLTSLKIDRSFIADLDDKPAIAELITTLCRMMGLNMVAEGVETEAQLAWLAERGC
QEYQGYLCSPALSAQEFQQRLL
>Mature_662_residues
MKSVLSWQGGNLELLEALSLPVWIFDIDHRRVFWANEAALQVWGAGSLLELQTRDMARDMSVSVAQRLAQYQQDFEREGA
SFVESWTLYPNGRPSVLKVKFRGIRVNGRMLMFCEAQNSLSADPASLRSTEALLHTSVLITLYDGNGGALYRNPASRERV
AVAGEGWRQHFVHDNDWQQLRQGVAACGEARLLARVNTREGMRWHEVAARACRDAVTGQDALLVSEVDITDLKHAEARAS
FLANHDVLTGLPNRNGIRSELLPHLQQALRNGRQVALMFIDLDRFKNVNDSLGHACGDELLIRMAGRLVGLLGHDEKAAR
LGGDEFLVMLSAPQVAERAEALARRILQALSVPMRLEGMDVGVSASIGISVCEGRELDLEQMMRHADLAMYAAKDAGRNN
LMFFTPALEARSQAQLALENDIRRGLDCGEFIAYFQPRVDIASGRVVGAEALARWRHPQRGLLMPDSFIPMCEDCGMVME
LGRQILLQAARQQRQWRDRGLDLLVSVNLSACQFVDPGLPGQVEQILADSGCQPDRLELEITESVLLGHDEQTMSTLQAM
RALGVRIAVDDFGTGYSNLAYLQRYPLTSLKIDRSFIADLDDKPAIAELITTLCRMMGLNMVAEGVETEAQLAWLAERGC
QEYQGYLCSPALSAQEFQQRLL

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=442, Percent_Identity=37.5565610859729, Blast_Score=313, Evalue=2e-86,
Organism=Escherichia coli, GI87081921, Length=420, Percent_Identity=33.0952380952381, Blast_Score=229, Evalue=3e-61,
Organism=Escherichia coli, GI226510982, Length=418, Percent_Identity=32.0574162679426, Blast_Score=209, Evalue=3e-55,
Organism=Escherichia coli, GI1790496, Length=250, Percent_Identity=35.6, Blast_Score=156, Evalue=5e-39,
Organism=Escherichia coli, GI1787055, Length=264, Percent_Identity=33.3333333333333, Blast_Score=151, Evalue=1e-37,
Organism=Escherichia coli, GI1786507, Length=240, Percent_Identity=33.3333333333333, Blast_Score=140, Evalue=4e-34,
Organism=Escherichia coli, GI87081845, Length=235, Percent_Identity=34.8936170212766, Blast_Score=139, Evalue=7e-34,
Organism=Escherichia coli, GI87081743, Length=236, Percent_Identity=32.6271186440678, Blast_Score=136, Evalue=4e-33,
Organism=Escherichia coli, GI1788502, Length=246, Percent_Identity=33.739837398374, Blast_Score=132, Evalue=9e-32,
Organism=Escherichia coli, GI87082096, Length=353, Percent_Identity=29.4617563739377, Blast_Score=122, Evalue=6e-29,
Organism=Escherichia coli, GI1788381, Length=353, Percent_Identity=29.7450424929178, Blast_Score=113, Evalue=4e-26,
Organism=Escherichia coli, GI87081980, Length=251, Percent_Identity=30.6772908366534, Blast_Score=111, Evalue=1e-25,
Organism=Escherichia coli, GI1788849, Length=418, Percent_Identity=26.3157894736842, Blast_Score=108, Evalue=8e-25,
Organism=Escherichia coli, GI87081977, Length=178, Percent_Identity=35.9550561797753, Blast_Score=91, Evalue=3e-19,
Organism=Escherichia coli, GI1786584, Length=177, Percent_Identity=32.2033898305085, Blast_Score=88, Evalue=2e-18,
Organism=Escherichia coli, GI1787262, Length=167, Percent_Identity=35.3293413173653, Blast_Score=87, Evalue=3e-18,
Organism=Escherichia coli, GI87082007, Length=160, Percent_Identity=34.375, Blast_Score=87, Evalue=5e-18,
Organism=Escherichia coli, GI87081881, Length=187, Percent_Identity=32.0855614973262, Blast_Score=86, Evalue=5e-18,
Organism=Escherichia coli, GI1788956, Length=152, Percent_Identity=36.8421052631579, Blast_Score=86, Evalue=8e-18,
Organism=Escherichia coli, GI145693134, Length=164, Percent_Identity=31.0975609756098, Blast_Score=86, Evalue=1e-17,
Organism=Escherichia coli, GI1787816, Length=228, Percent_Identity=33.3333333333333, Blast_Score=79, Evalue=1e-15,
Organism=Escherichia coli, GI1787802, Length=175, Percent_Identity=30.8571428571429, Blast_Score=75, Evalue=2e-14,
Organism=Escherichia coli, GI87081974, Length=122, Percent_Identity=35.2459016393443, Blast_Score=74, Evalue=4e-14,
Organism=Escherichia coli, GI1789650, Length=410, Percent_Identity=23.1707317073171, Blast_Score=72, Evalue=8e-14,
Organism=Escherichia coli, GI1787410, Length=156, Percent_Identity=26.2820512820513, Blast_Score=67, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 73586; Mature: 73586

Theoretical pI: Translated: 5.25; Mature: 5.25

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSVLSWQGGNLELLEALSLPVWIFDIDHRRVFWANEAALQVWGAGSLLELQTRDMARDM
CCCCCCCCCCCHHHHHHHCCCEEEEEECCCEEEEECCCEEEEECCCCEEEEHHHHHHHHH
SVSVAQRLAQYQQDFEREGASFVESWTLYPNGRPSVLKVKFRGIRVNGRMLMFCEAQNSL
HHHHHHHHHHHHHHHHHCCHHHHHHEEECCCCCCCEEEEEEEEEEECCCEEEEEECCCCC
SADPASLRSTEALLHTSVLITLYDGNGGALYRNPASRERVAVAGEGWRQHFVHDNDWQQL
CCCCHHHHHHHHHHEEEEEEEEEECCCCEEECCCCCCCEEEEECCCHHHHCCCCCCHHHH
RQGVAACGEARLLARVNTREGMRWHEVAARACRDAVTGQDALLVSEVDITDLKHAEARAS
HHHHHHCCCHHEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHH
FLANHDVLTGLPNRNGIRSELLPHLQQALRNGRQVALMFIDLDRFKNVNDSLGHACGDEL
HHHCCCCEECCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEEHHHHCCCCHHHHHHHHHHH
LIRMAGRLVGLLGHDEKAARLGGDEFLVMLSAPQVAERAEALARRILQALSVPMRLEGMD
HHHHHHHHHHHCCCCHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEECCCC
VGVSASIGISVCEGRELDLEQMMRHADLAMYAAKDAGRNNLMFFTPALEARSQAQLALEN
CCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHCCHHHHHHHHH
DIRRGLDCGEFIAYFQPRVDIASGRVVGAEALARWRHPQRGLLMPDSFIPMCEDCGMVME
HHHCCCCHHHHHHHHCCCCEECCCCEECHHHHHHHCCCCCCCCCCCCCCCHHHCCCHHHH
LGRQILLQAARQQRQWRDRGLDLLVSVNLSACQFVDPGLPGQVEQILADSGCQPDRLELE
HHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEECCCCCCCHHHHHHHHCCCCCCCCEEEE
ITESVLLGHDEQTMSTLQAMRALGVRIAVDDFGTGYSNLAYLQRYPLTSLKIDRSFIADL
EEHHHHHCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCCEEECHHHHCCC
DDKPAIAELITTLCRMMGLNMVAEGVETEAQLAWLAERGCQEYQGYLCSPALSAQEFQQR
CCCCHHHHHHHHHHHHHCHHHHHHCCCHHHHHHHHHHHHHHHHCCEECCCCCCHHHHHHH
LL
CC
>Mature Secondary Structure
MKSVLSWQGGNLELLEALSLPVWIFDIDHRRVFWANEAALQVWGAGSLLELQTRDMARDM
CCCCCCCCCCCHHHHHHHCCCEEEEEECCCEEEEECCCEEEEECCCCEEEEHHHHHHHHH
SVSVAQRLAQYQQDFEREGASFVESWTLYPNGRPSVLKVKFRGIRVNGRMLMFCEAQNSL
HHHHHHHHHHHHHHHHHCCHHHHHHEEECCCCCCCEEEEEEEEEEECCCEEEEEECCCCC
SADPASLRSTEALLHTSVLITLYDGNGGALYRNPASRERVAVAGEGWRQHFVHDNDWQQL
CCCCHHHHHHHHHHEEEEEEEEEECCCCEEECCCCCCCEEEEECCCHHHHCCCCCCHHHH
RQGVAACGEARLLARVNTREGMRWHEVAARACRDAVTGQDALLVSEVDITDLKHAEARAS
HHHHHHCCCHHEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHH
FLANHDVLTGLPNRNGIRSELLPHLQQALRNGRQVALMFIDLDRFKNVNDSLGHACGDEL
HHHCCCCEECCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEEHHHHCCCCHHHHHHHHHHH
LIRMAGRLVGLLGHDEKAARLGGDEFLVMLSAPQVAERAEALARRILQALSVPMRLEGMD
HHHHHHHHHHHCCCCHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEECCCC
VGVSASIGISVCEGRELDLEQMMRHADLAMYAAKDAGRNNLMFFTPALEARSQAQLALEN
CCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHCCHHHHHHHHH
DIRRGLDCGEFIAYFQPRVDIASGRVVGAEALARWRHPQRGLLMPDSFIPMCEDCGMVME
HHHCCCCHHHHHHHHCCCCEECCCCEECHHHHHHHCCCCCCCCCCCCCCCHHHCCCHHHH
LGRQILLQAARQQRQWRDRGLDLLVSVNLSACQFVDPGLPGQVEQILADSGCQPDRLELE
HHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEECCCCCCCHHHHHHHHCCCCCCCCEEEE
ITESVLLGHDEQTMSTLQAMRALGVRIAVDDFGTGYSNLAYLQRYPLTSLKIDRSFIADL
EEHHHHHCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCCEEECHHHHCCC
DDKPAIAELITTLCRMMGLNMVAEGVETEAQLAWLAERGCQEYQGYLCSPALSAQEFQQR
CCCCHHHHHHHHHHHHHCHHHHHHCCCHHHHHHHHHHHHHHHHCCEECCCCCCHHHHHHH
LL
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]