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The map label for this gene is lptA [H]

Identifier: 34498785

GI number: 34498785

Start: 3628817

End: 3629377

Strand: Direct

Name: lptA [H]

Synonym: CV_3330

Alternate gene names: 34498785

Gene position: 3628817-3629377 (Clockwise)

Preceding gene: 34498784

Following gene: 34498786

Centisome position: 76.38

GC content: 67.02

Gene sequence:

>561_bases
ATGTCAAATAACTCCCGCATCCTGCTGGCCGGCCTGCTGCTGTCCGCCGCCGCGCTGGCCCACGCCGAACAGGCGGATAA
AACCAAGCCCATCGAAATCACCAGCGACAACGGCTGCACCATGGAGCAGACCAAGGGCATCTCCACCTGCACCGGCAACG
TGGTGGTGGTGCAGGGCACGCTGCGCCTGAACGCCGACAAGGTAGTCGCCACGCAGGACCAGCAGGGCAACCAGACGCTG
CAGGCCACCGGCCGCATCGTCACCTTCCGCCAGAAGCTGGACAACAACAGCGGCTGGATCGAAGGCCAATCCAGCAAGCT
CGACTACGACAGCGCCAAGCACTTCGCGGTGCTGACCGGCAACGCCCGCGTCAAGCGCAACGGCGACCTCGTGATCGGCA
ACGTGATCACCTACGACACCCAGAGCGAGGTCTACCAGGTGATGGGCGGCGGCGCCAGCGCCGGCAAGGGCGGCGGACGC
ACCACGGTGATCCTGCAGCCCAAGACCTCCGCGTCGCAGCCGGCGGCCGCCAAGCCCGCCGCCGGAGCCGCCAAGCCATG
A

Upstream 100 bases:

>100_bases
TCGGTGATCTATCAGGGCAATTCGGTGGCCAACTCCATCGGCTTCAGCTACCAGGAGTCGCTGGGCCTGCTCAATCTGTA
CTCCAAAACCAAGATCGTCT

Downstream 100 bases:

>100_bases
AGCACAGCACCCTCACTGTCTCCAAGCTGAAAAAGCGCTTCAAGAAGCGCACCGTGGTCAAGGACGTGTCGCTGAGCATA
GACAGCGGCGAAGTGGTCGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 186; Mature: 185

Protein sequence:

>186_residues
MSNNSRILLAGLLLSAAALAHAEQADKTKPIEITSDNGCTMEQTKGISTCTGNVVVVQGTLRLNADKVVATQDQQGNQTL
QATGRIVTFRQKLDNNSGWIEGQSSKLDYDSAKHFAVLTGNARVKRNGDLVIGNVITYDTQSEVYQVMGGGASAGKGGGR
TTVILQPKTSASQPAAAKPAAGAAKP

Sequences:

>Translated_186_residues
MSNNSRILLAGLLLSAAALAHAEQADKTKPIEITSDNGCTMEQTKGISTCTGNVVVVQGTLRLNADKVVATQDQQGNQTL
QATGRIVTFRQKLDNNSGWIEGQSSKLDYDSAKHFAVLTGNARVKRNGDLVIGNVITYDTQSEVYQVMGGGASAGKGGGR
TTVILQPKTSASQPAAAKPAAGAAKP
>Mature_185_residues
SNNSRILLAGLLLSAAALAHAEQADKTKPIEITSDNGCTMEQTKGISTCTGNVVVVQGTLRLNADKVVATQDQQGNQTLQ
ATGRIVTFRQKLDNNSGWIEGQSSKLDYDSAKHFAVLTGNARVKRNGDLVIGNVITYDTQSEVYQVMGGGASAGKGGGRT
TVILQPKTSASQPAAAKPAAGAAKP

Specific function: Required for the translocation of lipopolysaccharide (LPS) from the inner membrane to the outer membrane. May act as a chaperone that facilitates LPS transfer across the aquaeous environment of the periplasm. Interacts specifically with the lipid A domain

COG id: COG1934

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the lptA family [H]

Homologues:

Organism=Escherichia coli, GI1789592, Length=178, Percent_Identity=37.6404494382022, Blast_Score=96, Evalue=2e-21,

Paralogues:

None

Copy number: 60 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014340
- InterPro:   IPR005653 [H]

Pfam domain/function: PF03968 OstA [H]

EC number: NA

Molecular weight: Translated: 19327; Mature: 19196

Theoretical pI: Translated: 9.81; Mature: 9.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNNSRILLAGLLLSAAALAHAEQADKTKPIEITSDNGCTMEQTKGISTCTGNVVVVQGT
CCCCCEEEEHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHCCCCEEECCCEEEEEEE
LRLNADKVVATQDQQGNQTLQATGRIVTFRQKLDNNSGWIEGQSSKLDYDSAKHFAVLTG
EEECCCEEEEECCCCCCEEEEECCCEEEEEECCCCCCCEEECCCCCCCCCCCCEEEEEEC
NARVKRNGDLVIGNVITYDTQSEVYQVMGGGASAGKGGGRTTVILQPKTSASQPAAAKPA
CEEEEECCCEEEEEEEEECCHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCC
AGAAKP
CCCCCC
>Mature Secondary Structure 
SNNSRILLAGLLLSAAALAHAEQADKTKPIEITSDNGCTMEQTKGISTCTGNVVVVQGT
CCCCEEEEHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHCCCCEEECCCEEEEEEE
LRLNADKVVATQDQQGNQTLQATGRIVTFRQKLDNNSGWIEGQSSKLDYDSAKHFAVLTG
EEECCCEEEEECCCCCCEEEEECCCEEEEEECCCCCCCEEECCCCCCCCCCCCEEEEEEC
NARVKRNGDLVIGNVITYDTQSEVYQVMGGGASAGKGGGRTTVILQPKTSASQPAAAKPA
CEEEEECCCEEEEEEEEECCHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCC
AGAAKP
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]