| Definition | Chromobacterium violaceum ATCC 12472 chromosome, complete genome. |
|---|---|
| Accession | NC_005085 |
| Length | 4,751,080 |
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The map label for this gene is hflK [H]
Identifier: 34498767
GI number: 34498767
Start: 3604597
End: 3605622
Strand: Direct
Name: hflK [H]
Synonym: CV_3312
Alternate gene names: 34498767
Gene position: 3604597-3605622 (Clockwise)
Preceding gene: 34498764
Following gene: 34498768
Centisome position: 75.87
GC content: 69.01
Gene sequence:
>1026_bases ATGCCCGAAACCCGCCCCAACACACCGCCCCCCCCCTCCCCGTTCGCCGCGCTGCGGCTGCGGCTGGACTACACGCTGGA ACTGCTGGGCATGCGCGGAAAAGGCCTGGCCTTGCTCGCCGGCATGATCGCCATCCTCTGGCTGGCCTCCGGCATCTACC GCGTGGAGCCCGACGAGCAGGGCGTGGTGCAGCGCTTCGGCCGCTGGACCGACACCACCGCGGCCGGCCTGCACTACCAC CTGCCCTGGCCGATGGAGACCATCCAGCTGCCCAAAGTTACCCAGATCAAGCAGCTGAAGCTGGCCAATCTGTATGAAAG CGGCCCGCCCGATGCCGCCGACCCGCGCGAAAAGCAGATGCTGACCGGCGACGAGAACATCATCGAGGCCGACTGCGCGG TGTTCTGGCGCATCAAGGACGCCGGCCGGTTCCTGTTCCGCGCCAACAAGCCGGAAGAAGCGCTGCGCATCACCGCCGAA GGCGCGCTGCGCGAGGTGATCTCCCGCACGCCCATCCAGGCGGCGATGTCCAACCGCCGCCAGCAGGTGGCCGAGGAGGC CCGCGAGCTGATCCAGCAGCGGCTGGACGCGCAGCAGGCCGGCATCCTGATCACCCAGGTGCAGCTGCAGCGGGTCGACC CGCCGGCGGCGGTGATCGACGCCTTCAACGACGTGCAGCGCGCCCGCGCCGACCAGGAGCGCGCGCGCAACGAGGCCCAG GCCTACAGCAACGACATCCTGCCCAAGGCGCGCGGCGAGGCCGAGCGCATCCGCCAGGAGGCCGAAGCCTACCGCAGCCA GGTGGTCAACCTGGCCCAGGGCGAGGCCAGGCGCTTCGACTCGGTGTACCAGACCTATGCCCAGGCCAAGGACGTCACCG CGTGGCGGCTGTACCTGGAAAGCATGGACGACATGCTGAAGAAGGCCAGCAAGGTGGTGATAGACGGCAGCGGCAAGAGC GGCGCCGGCGTGTTGCCGCTGCTGCAGCTGCAGGACAAACCCAAGGCCGGCAAGGAGAACCGCTGA
Upstream 100 bases:
>100_bases GGCATTGCCGCATCCCTAAATACGCCGACGCTGTCATCCGTCCGGCATTTGCCGCGTTAAACCCGACAGCAAGCATGGTT AAAACCAGGACAAGCCCTTG
Downstream 100 bases:
>100_bases TGGATAAGCAGTGGCGCGGAATCGGCTGGGCGGCGGGCCTGGCGGTCGTATGGCTGGCGCTGTCGGCGCAATACACGCTG AACGAGGGGCAGAAGGCGCT
Product: transmembrane protein HflK
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 341; Mature: 340
Protein sequence:
>341_residues MPETRPNTPPPPSPFAALRLRLDYTLELLGMRGKGLALLAGMIAILWLASGIYRVEPDEQGVVQRFGRWTDTTAAGLHYH LPWPMETIQLPKVTQIKQLKLANLYESGPPDAADPREKQMLTGDENIIEADCAVFWRIKDAGRFLFRANKPEEALRITAE GALREVISRTPIQAAMSNRRQQVAEEARELIQQRLDAQQAGILITQVQLQRVDPPAAVIDAFNDVQRARADQERARNEAQ AYSNDILPKARGEAERIRQEAEAYRSQVVNLAQGEARRFDSVYQTYAQAKDVTAWRLYLESMDDMLKKASKVVIDGSGKS GAGVLPLLQLQDKPKAGKENR
Sequences:
>Translated_341_residues MPETRPNTPPPPSPFAALRLRLDYTLELLGMRGKGLALLAGMIAILWLASGIYRVEPDEQGVVQRFGRWTDTTAAGLHYH LPWPMETIQLPKVTQIKQLKLANLYESGPPDAADPREKQMLTGDENIIEADCAVFWRIKDAGRFLFRANKPEEALRITAE GALREVISRTPIQAAMSNRRQQVAEEARELIQQRLDAQQAGILITQVQLQRVDPPAAVIDAFNDVQRARADQERARNEAQ AYSNDILPKARGEAERIRQEAEAYRSQVVNLAQGEARRFDSVYQTYAQAKDVTAWRLYLESMDDMLKKASKVVIDGSGKS GAGVLPLLQLQDKPKAGKENR >Mature_340_residues PETRPNTPPPPSPFAALRLRLDYTLELLGMRGKGLALLAGMIAILWLASGIYRVEPDEQGVVQRFGRWTDTTAAGLHYHL PWPMETIQLPKVTQIKQLKLANLYESGPPDAADPREKQMLTGDENIIEADCAVFWRIKDAGRFLFRANKPEEALRITAEG ALREVISRTPIQAAMSNRRQQVAEEARELIQQRLDAQQAGILITQVQLQRVDPPAAVIDAFNDVQRARADQERARNEAQA YSNDILPKARGEAERIRQEAEAYRSQVVNLAQGEARRFDSVYQTYAQAKDVTAWRLYLESMDDMLKKASKVVIDGSGKSG AGVLPLLQLQDKPKAGKENR
Specific function: HflC and HflK could encode or regulate a protease [H]
COG id: COG0330
COG function: function code O; Membrane protease subunits, stomatin/prohibitin homologs
Gene ontology:
Cell location: Membrane; Single-pass membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the band 7/mec-2 family. HflK subfamily [H]
Homologues:
Organism=Escherichia coli, GI1790616, Length=281, Percent_Identity=29.8932384341637, Blast_Score=146, Evalue=2e-36,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001107 - InterPro: IPR010201 - InterPro: IPR020980 - InterPro: IPR001972 [H]
Pfam domain/function: PF01145 Band_7; PF12221 HflK_N [H]
EC number: NA
Molecular weight: Translated: 38207; Mature: 38076
Theoretical pI: Translated: 8.85; Mature: 8.85
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPETRPNTPPPPSPFAALRLRLDYTLELLGMRGKGLALLAGMIAILWLASGIYRVEPDEQ CCCCCCCCCCCCCCHHHHEEHHHHHHEECCCCCCHHHHHHHHHHHHHHHCCCEEECCCCH GVVQRFGRWTDTTAAGLHYHLPWPMETIQLPKVTQIKQLKLANLYESGPPDAADPREKQM HHHHHCCCCCCCCCCCEEEECCCCHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHH LTGDENIIEADCAVFWRIKDAGRFLFRANKPEEALRITAEGALREVISRTPIQAAMSNRR CCCCCCCEECCCEEEEEECCCCCEEEECCCCHHHHEEHHHHHHHHHHHCCCHHHHHHHHH QQVAEEARELIQQRLDAQQAGILITQVQLQRVDPPAAVIDAFNDVQRARADQERARNEAQ HHHHHHHHHHHHHHHCHHHHCEEEEEHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH AYSNDILPKARGEAERIRQEAEAYRSQVVNLAQGEARRFDSVYQTYAQAKDVTAWRLYLE HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH SMDDMLKKASKVVIDGSGKSGAGVLPLLQLQDKPKAGKENR HHHHHHHHHCEEEEECCCCCCCCCCHHHEECCCCCCCCCCC >Mature Secondary Structure PETRPNTPPPPSPFAALRLRLDYTLELLGMRGKGLALLAGMIAILWLASGIYRVEPDEQ CCCCCCCCCCCCCHHHHEEHHHHHHEECCCCCCHHHHHHHHHHHHHHHCCCEEECCCCH GVVQRFGRWTDTTAAGLHYHLPWPMETIQLPKVTQIKQLKLANLYESGPPDAADPREKQM HHHHHCCCCCCCCCCCEEEECCCCHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHH LTGDENIIEADCAVFWRIKDAGRFLFRANKPEEALRITAEGALREVISRTPIQAAMSNRR CCCCCCCEECCCEEEEEECCCCCEEEECCCCHHHHEEHHHHHHHHHHHCCCHHHHHHHHH QQVAEEARELIQQRLDAQQAGILITQVQLQRVDPPAAVIDAFNDVQRARADQERARNEAQ HHHHHHHHHHHHHHHCHHHHCEEEEEHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH AYSNDILPKARGEAERIRQEAEAYRSQVVNLAQGEARRFDSVYQTYAQAKDVTAWRLYLE HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH SMDDMLKKASKVVIDGSGKSGAGVLPLLQLQDKPKAGKENR HHHHHHHHHCEEEEECCCCCCCCCCHHHEECCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Hydrolase; Acting on peptide bonds (Peptidases) [C]
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 10952301 [H]