Click here to switch to the map view.

The map label for this gene is rnfE [H]

Identifier: 34498747

GI number: 34498747

Start: 3583082

End: 3583855

Strand: Direct

Name: rnfE [H]

Synonym: CV_3292

Alternate gene names: 34498747

Gene position: 3583082-3583855 (Clockwise)

Preceding gene: 34498746

Following gene: 34498748

Centisome position: 75.42

GC content: 73.39

Gene sequence:

>774_bases
ATGGCCGTCATCACTCTCGTCGACCGGATCGACGCCCTCCTGCCCCAGACCCAGTGCGGACAGTGCAGCCACGCCGGCTG
CCGCCCGTACGCCGAGGCGCTGGCGCAAGGCCGCGACCCGATCAACCGCTGCCCGCCGGGCGGCGAGGACGGCATCCGGG
CGCTGGCGGAGCTGCTGGGCCAGCCGGCCATCCCCTTCGACCCCGCCGGCCCGCAGCCCAAGCCGCGCGCGCTGGCCGTG
ATCCGCGAAGACAGCTGCATAGGCTGTACGCTGTGCATCCAGGCCTGTCCGGTGGACGCCATCGTCGGCGCGGCCAAGCA
GATGCACACGGTGATCGCCGACGAATGCACCGGCTGCGAGCTGTGCCTGGCGCCCTGTCCTGTCGACTGCATCGACCTCG
TCCCAGTGGCCGATCCGGACGACGGCAAGCGCGAGCGGGTGATGGCCCGCGCGGCGCAGGCGCGCAAGCGCTTCGACGCC
CGCCAGGCGCGCAAGGACCGCGACGCCGCGGACAAGGCGAGACGCCTGGCCGAGCGCGCCGCGGTGGCGGCGCCCGCTCC
CGCGGCGAGCCCCGTCGCCGGGGTCGCCCCCTCCGCCACGGCGCTCGCCGCCGACAAGAACGAGTTGATCCGCAAGGCGA
TGGAGCGCGCCAAGCAACAGGCGCCGGTAGCCGCCACCGCGTCCGCCGACAAGATGGCGGTGATACGCGCCGCGATGGAG
CGCGCCGCCGCGATGAAGGCCGCCCAGCAGGAAGCAGACAAGGATAAAGAGTGA

Upstream 100 bases:

>100_bases
TGCTGGTCGATGAAAACGCGGCGCGGGACGGCGCGGCGGGTGTTGAAGAGGATAGCGCTAACGAAGATAATTAACGGTTT
TTGAAGCGGAATCCGACAGC

Downstream 100 bases:

>100_bases
ACGCCGCCAAACGCCAAGAAATCTTCCGCCGCCTGCGCGACGACAATCCGCATCCGACCACCGAGCTGGAATACAACACG
CCGTTCGAGCTGCTGATCTC

Product: ferredoxin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 257; Mature: 256

Protein sequence:

>257_residues
MAVITLVDRIDALLPQTQCGQCSHAGCRPYAEALAQGRDPINRCPPGGEDGIRALAELLGQPAIPFDPAGPQPKPRALAV
IREDSCIGCTLCIQACPVDAIVGAAKQMHTVIADECTGCELCLAPCPVDCIDLVPVADPDDGKRERVMARAAQARKRFDA
RQARKDRDAADKARRLAERAAVAAPAPAASPVAGVAPSATALAADKNELIRKAMERAKQQAPVAATASADKMAVIRAAME
RAAAMKAAQQEADKDKE

Sequences:

>Translated_257_residues
MAVITLVDRIDALLPQTQCGQCSHAGCRPYAEALAQGRDPINRCPPGGEDGIRALAELLGQPAIPFDPAGPQPKPRALAV
IREDSCIGCTLCIQACPVDAIVGAAKQMHTVIADECTGCELCLAPCPVDCIDLVPVADPDDGKRERVMARAAQARKRFDA
RQARKDRDAADKARRLAERAAVAAPAPAASPVAGVAPSATALAADKNELIRKAMERAKQQAPVAATASADKMAVIRAAME
RAAAMKAAQQEADKDKE
>Mature_256_residues
AVITLVDRIDALLPQTQCGQCSHAGCRPYAEALAQGRDPINRCPPGGEDGIRALAELLGQPAIPFDPAGPQPKPRALAVI
REDSCIGCTLCIQACPVDAIVGAAKQMHTVIADECTGCELCLAPCPVDCIDLVPVADPDDGKRERVMARAAQARKRFDAR
QARKDRDAADKARRLAERAAVAAPAPAASPVAGVAPSATALAADKNELIRKAMERAKQQAPVAATASADKMAVIRAAMER
AAAMKAAQQEADKDKE

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG2878

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfB

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787915, Length=142, Percent_Identity=56.3380281690141, Blast_Score=160, Evalue=6e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001450
- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR010207
- InterPro:   IPR016463
- InterPro:   IPR007202 [H]

Pfam domain/function: PF00037 Fer4; PF04060 FeS [H]

EC number: NA

Molecular weight: Translated: 26931; Mature: 26800

Theoretical pI: Translated: 7.48; Mature: 7.48

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

5.1 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
7.8 %Cys+Met (Translated Protein)
5.1 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
7.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVITLVDRIDALLPQTQCGQCSHAGCRPYAEALAQGRDPINRCPPGGEDGIRALAELLG
CHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCHHCCCCCCHHHHHHHHHHHC
QPAIPFDPAGPQPKPRALAVIREDSCIGCTLCIQACPVDAIVGAAKQMHTVIADECTGCE
CCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCE
LCLAPCPVDCIDLVPVADPDDGKRERVMARAAQARKRFDARQARKDRDAADKARRLAERA
EEECCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
AVAAPAPAASPVAGVAPSATALAADKNELIRKAMERAKQQAPVAATASADKMAVIRAAME
HHCCCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHHHH
RAAAMKAAQQEADKDKE
HHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
AVITLVDRIDALLPQTQCGQCSHAGCRPYAEALAQGRDPINRCPPGGEDGIRALAELLG
HHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCHHCCCCCCHHHHHHHHHHHC
QPAIPFDPAGPQPKPRALAVIREDSCIGCTLCIQACPVDAIVGAAKQMHTVIADECTGCE
CCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCE
LCLAPCPVDCIDLVPVADPDDGKRERVMARAAQARKRFDARQARKDRDAADKARRLAERA
EEECCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
AVAAPAPAASPVAGVAPSATALAADKNELIRKAMERAKQQAPVAATASADKMAVIRAAME
HHCCCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHHHH
RAAAMKAAQQEADKDKE
HHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA