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The map label for this gene is ywbI [H]

Identifier: 34498746

GI number: 34498746

Start: 3582123

End: 3583055

Strand: Direct

Name: ywbI [H]

Synonym: CV_3291

Alternate gene names: 34498746

Gene position: 3582123-3583055 (Clockwise)

Preceding gene: 34498744

Following gene: 34498747

Centisome position: 75.4

GC content: 69.67

Gene sequence:

>933_bases
ATGAATCTGCGCAATCTACGCTATTTCGTCGCCGTGGCCCGCCACGGCAGCTTCCAGAAGGCCGCGCCACGCATCCACCT
GACGCAGCCGGCGTTGAGCAAGGCGATCCAGCAGCTGGAAGAGGAGCTGGACGCGACCCTGCTGGTGCGCAGCCGCCCTG
GCAATCCGGCCAGCCTGACGCCGGCCGGGGAACTGGTGCTGCGCCGCGCGGAAAGGCTGCTGAGCGAAAACGCCGCCATG
CTGGACGATCTGGCCCGCCTGAAACGCCAGCCGCAGGGCGAACTGCGCCTGGGCCTGCCGCCGCTGGCCGGCATTCCCCA
GGTCGCGCGCTTGCTGCAGACTTTCCGCGCCCGCTATCCGCTGGTTCAGTTGCGCCTGTTCGAGCGCGGCGGCTGCGAGC
AGGAGGAGGCGGTGCTGCGCGGCGACATCGAAGTGGCGATCTGCCTGCAGCCGCAGCGGCCGGAACTGGACAGCCTGCTG
ATCTGCGAGCATCCGCTGCGCTTCGCGCTGCCGCTCTCCCATCCGCTGGCCGGCCGGGCCAGCCTGAAGCCGGCCGAAGT
GGCGGACCTGCCCTGGATACGGCTGGAAGGCGCCTCGCAGGTGAACCGCATGGCCGCCGACGCCTGGCAGCAGGCCGGGC
TGGTGCCGGAAACCTATGCCGACAGCGGCCACCTGGGGCTATGCCTGTCGCTGGTGGCCGCCGGCTGCGGCCTACTGATC
CTGCCGGAACCCTGGCTGCCGCCCCATTCGGCCGACATCGCGCTGGTGCCGTGCGACGATCCGGCGCTGAGCTGGAGGCT
ATCGCTGATCTGGCGGCGCGGCGCGGCCTTGTCCGAACCGGCCGAACGATGGCGCCAGCTGCTGGTCGATGAAAACGCGG
CGCGGGACGGCGCGGCGGGTGTTGAAGAGGATAGCGCTAACGAAGATAATTAA

Upstream 100 bases:

>100_bases
GGCGCGCTCGCCGGGGATGAAGCGGGCATGCTATTAGAGTATCCTGCCGATAGGTTAATGAGAATTTGTCATATCCTGTC
CATCCAAACGTTATACAGCC

Downstream 100 bases:

>100_bases
CGGTTTTTGAAGCGGAATCCGACAGCATGGCCGTCATCACTCTCGTCGACCGGATCGACGCCCTCCTGCCCCAGACCCAG
TGCGGACAGTGCAGCCACGC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 310; Mature: 310

Protein sequence:

>310_residues
MNLRNLRYFVAVARHGSFQKAAPRIHLTQPALSKAIQQLEEELDATLLVRSRPGNPASLTPAGELVLRRAERLLSENAAM
LDDLARLKRQPQGELRLGLPPLAGIPQVARLLQTFRARYPLVQLRLFERGGCEQEEAVLRGDIEVAICLQPQRPELDSLL
ICEHPLRFALPLSHPLAGRASLKPAEVADLPWIRLEGASQVNRMAADAWQQAGLVPETYADSGHLGLCLSLVAAGCGLLI
LPEPWLPPHSADIALVPCDDPALSWRLSLIWRRGAALSEPAERWRQLLVDENAARDGAAGVEEDSANEDN

Sequences:

>Translated_310_residues
MNLRNLRYFVAVARHGSFQKAAPRIHLTQPALSKAIQQLEEELDATLLVRSRPGNPASLTPAGELVLRRAERLLSENAAM
LDDLARLKRQPQGELRLGLPPLAGIPQVARLLQTFRARYPLVQLRLFERGGCEQEEAVLRGDIEVAICLQPQRPELDSLL
ICEHPLRFALPLSHPLAGRASLKPAEVADLPWIRLEGASQVNRMAADAWQQAGLVPETYADSGHLGLCLSLVAAGCGLLI
LPEPWLPPHSADIALVPCDDPALSWRLSLIWRRGAALSEPAERWRQLLVDENAARDGAAGVEEDSANEDN
>Mature_310_residues
MNLRNLRYFVAVARHGSFQKAAPRIHLTQPALSKAIQQLEEELDATLLVRSRPGNPASLTPAGELVLRRAERLLSENAAM
LDDLARLKRQPQGELRLGLPPLAGIPQVARLLQTFRARYPLVQLRLFERGGCEQEEAVLRGDIEVAICLQPQRPELDSLL
ICEHPLRFALPLSHPLAGRASLKPAEVADLPWIRLEGASQVNRMAADAWQQAGLVPETYADSGHLGLCLSLVAAGCGLLI
LPEPWLPPHSADIALVPCDDPALSWRLSLIWRRGAALSEPAERWRQLLVDENAARDGAAGVEEDSANEDN

Specific function: Transcriptional Activator Of The Hca Operon For 3- Phenylpropionic Acid Catabolism. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788887, Length=279, Percent_Identity=30.1075268817204, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI1787879, Length=299, Percent_Identity=31.1036789297659, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI157672245, Length=300, Percent_Identity=30, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI145693105, Length=294, Percent_Identity=28.2312925170068, Blast_Score=100, Evalue=9e-23,
Organism=Escherichia coli, GI1790399, Length=300, Percent_Identity=27, Blast_Score=98, Evalue=8e-22,
Organism=Escherichia coli, GI1787601, Length=285, Percent_Identity=29.1228070175439, Blast_Score=89, Evalue=5e-19,
Organism=Escherichia coli, GI1788748, Length=301, Percent_Identity=29.9003322259136, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1789506, Length=298, Percent_Identity=22.4832214765101, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1787530, Length=266, Percent_Identity=25.187969924812, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1787806, Length=306, Percent_Identity=28.1045751633987, Blast_Score=78, Evalue=7e-16,
Organism=Escherichia coli, GI1790208, Length=248, Percent_Identity=27.0161290322581, Blast_Score=74, Evalue=8e-15,
Organism=Escherichia coli, GI1788297, Length=151, Percent_Identity=29.1390728476821, Blast_Score=74, Evalue=8e-15,
Organism=Escherichia coli, GI2367136, Length=246, Percent_Identity=23.9837398373984, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1786713, Length=251, Percent_Identity=27.8884462151394, Blast_Score=65, Evalue=8e-12,
Organism=Escherichia coli, GI1786401, Length=121, Percent_Identity=34.7107438016529, Blast_Score=64, Evalue=8e-12,
Organism=Escherichia coli, GI1790262, Length=249, Percent_Identity=25.7028112449799, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1789440, Length=128, Percent_Identity=31.25, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34039; Mature: 34039

Theoretical pI: Translated: 5.70; Mature: 5.70

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLRNLRYFVAVARHGSFQKAAPRIHLTQPALSKAIQQLEEELDATLLVRSRPGNPASLT
CCCCHHHHEEHHHHCCCHHHCCCCEEECCHHHHHHHHHHHHHHCEEEEEECCCCCCCCCC
PAGELVLRRAERLLSENAAMLDDLARLKRQPQGELRLGLPPLAGIPQVARLLQTFRARYP
HHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHHHHCC
LVQLRLFERGGCEQEEAVLRGDIEVAICLQPQRPELDSLLICEHPLRFALPLSHPLAGRA
EEEEEEECCCCCCHHHHHHHCCCEEEEEECCCCCCCCCEEEECCCCCEECCCCCCCCCCC
SLKPAEVADLPWIRLEGASQVNRMAADAWQQAGLVPETYADSGHLGLCLSLVAAGCGLLI
CCCCCHHCCCCEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCEEE
LPEPWLPPHSADIALVPCDDPALSWRLSLIWRRGAALSEPAERWRQLLVDENAARDGAAG
ECCCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCC
VEEDSANEDN
CCCCCCCCCC
>Mature Secondary Structure
MNLRNLRYFVAVARHGSFQKAAPRIHLTQPALSKAIQQLEEELDATLLVRSRPGNPASLT
CCCCHHHHEEHHHHCCCHHHCCCCEEECCHHHHHHHHHHHHHHCEEEEEECCCCCCCCCC
PAGELVLRRAERLLSENAAMLDDLARLKRQPQGELRLGLPPLAGIPQVARLLQTFRARYP
HHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHHHHCC
LVQLRLFERGGCEQEEAVLRGDIEVAICLQPQRPELDSLLICEHPLRFALPLSHPLAGRA
EEEEEEECCCCCCHHHHHHHCCCEEEEEECCCCCCCCCEEEECCCCCEECCCCCCCCCCC
SLKPAEVADLPWIRLEGASQVNRMAADAWQQAGLVPETYADSGHLGLCLSLVAAGCGLLI
CCCCCHHCCCCEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCEEE
LPEPWLPPHSADIALVPCDDPALSWRLSLIWRRGAALSEPAERWRQLLVDENAARDGAAG
ECCCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCC
VEEDSANEDN
CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7934828; 9384377 [H]