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The map label for this gene is pecT [H]

Identifier: 34498744

GI number: 34498744

Start: 3580355

End: 3581278

Strand: Direct

Name: pecT [H]

Synonym: CV_3289

Alternate gene names: 34498744

Gene position: 3580355-3581278 (Clockwise)

Preceding gene: 34498739

Following gene: 34498746

Centisome position: 75.36

GC content: 72.29

Gene sequence:

>924_bases
ATGCGCAAAACCCTGCTCGACCTGGACGCGCTGCAAAGCTTCGTCCGCGGCGTGGAGCTGGGCAGCTTTGCCCGCGCGGC
CGAAGGCCTGCACCGGTCGACCTCCGCCATCAGCGCCCAATTGAAAAAGCTGGAGGAACAGGCGGGCATACCCATTCTGC
AGAAGAACGGCCGCGGCCTGGAGCCGACGCCGGCCGGCGAAGCGCTGTTGTCCTACGCCCGCAGGCTGCTGGAGCTGAAC
GACGAGGCGGTGCAGGCGCTGAAGGGCGCGGCGCTGGCCGGCAGCGTGCGGCTGGGCCTGGCCGAGGACTTCGGCGAAGG
CCTGCTGCCCGACGCGCTTGGACGTTTCGCCCGCGCCTGCCCGGACGTATGCGTGGAAGTGAAGGTAGGCCGCAGCCAGG
GATTGCAGCAGGCGCTGAGGAACGGCCAGCTCGACCTCGCCTTGCTGTGGAGCGACGGCTCGCACTGGCCGCATCAGGAC
CAGCTGGGGCAGATTCCCTTGCACTGGATCGCCAGCTCCGCGACGGTTGCCCGCGCGCCCGGCCAGCCGGTGTCGCTGGC
GCTTTTCGATCCGCCCTGCCTGGCGCGTCGCCAGGCTTGCGACGCGCTGGACCAGGCAGGACTGGCGTGGCGGGTGGCCG
TAAACGGCAGCAGCCTGGCCAGCCTGTGGTCCGCCGTGCGCGCCGGCCTGGGCGTCACCGCCCGCGCGGCCTTGTGCCTG
CCGCCGGACCTGAAACCGCTCGACGCCACCGCAGCCGGCCTGCCGCCCCTGCAGAAGCTGGAACTGGCGCTATGGCGGGC
GCAGACGCCCTTGCCCGTCGCGGCGGAACAGCTGCGCCTCATCCTGCGGGACGGCGCGGCCGCTCAGATCGCGGCCGGCG
AGCGCGCCGCGCCGAAGCCGCGGGTACCCGAGGCGGCCGCGTAA

Upstream 100 bases:

>100_bases
CTTTGTGGCGTTGAAGGCATGCGCTCACTGTAAACCCAGGCAATAATTCATAAAATCGAATATATTTTCACAAATCATCC
TAAAATTCAGGACTATTAAG

Downstream 100 bases:

>100_bases
GCTTGCGCGCCGGCATGGTCGCGCGCCACCTGTTCCGCCACCGCTCTCACATCGGCATACTGCTCGGCGTAACGCTGGAC
GAAATCCCCGCCCAGGCCAA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: Pectinase gene transcriptional regulator [H]

Number of amino acids: Translated: 307; Mature: 307

Protein sequence:

>307_residues
MRKTLLDLDALQSFVRGVELGSFARAAEGLHRSTSAISAQLKKLEEQAGIPILQKNGRGLEPTPAGEALLSYARRLLELN
DEAVQALKGAALAGSVRLGLAEDFGEGLLPDALGRFARACPDVCVEVKVGRSQGLQQALRNGQLDLALLWSDGSHWPHQD
QLGQIPLHWIASSATVARAPGQPVSLALFDPPCLARRQACDALDQAGLAWRVAVNGSSLASLWSAVRAGLGVTARAALCL
PPDLKPLDATAAGLPPLQKLELALWRAQTPLPVAAEQLRLILRDGAAAQIAAGERAAPKPRVPEAAA

Sequences:

>Translated_307_residues
MRKTLLDLDALQSFVRGVELGSFARAAEGLHRSTSAISAQLKKLEEQAGIPILQKNGRGLEPTPAGEALLSYARRLLELN
DEAVQALKGAALAGSVRLGLAEDFGEGLLPDALGRFARACPDVCVEVKVGRSQGLQQALRNGQLDLALLWSDGSHWPHQD
QLGQIPLHWIASSATVARAPGQPVSLALFDPPCLARRQACDALDQAGLAWRVAVNGSSLASLWSAVRAGLGVTARAALCL
PPDLKPLDATAAGLPPLQKLELALWRAQTPLPVAAEQLRLILRDGAAAQIAAGERAAPKPRVPEAAA
>Mature_307_residues
MRKTLLDLDALQSFVRGVELGSFARAAEGLHRSTSAISAQLKKLEEQAGIPILQKNGRGLEPTPAGEALLSYARRLLELN
DEAVQALKGAALAGSVRLGLAEDFGEGLLPDALGRFARACPDVCVEVKVGRSQGLQQALRNGQLDLALLWSDGSHWPHQD
QLGQIPLHWIASSATVARAPGQPVSLALFDPPCLARRQACDALDQAGLAWRVAVNGSSLASLWSAVRAGLGVTARAALCL
PPDLKPLDATAAGLPPLQKLELALWRAQTPLPVAAEQLRLILRDGAAAQIAAGERAAPKPRVPEAAA

Specific function: Regulates pectinase gene expression [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788626, Length=262, Percent_Identity=34.3511450381679, Blast_Score=143, Evalue=1e-35,
Organism=Escherichia coli, GI157672245, Length=231, Percent_Identity=25.5411255411255, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1788297, Length=238, Percent_Identity=28.9915966386555, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1787530, Length=247, Percent_Identity=25.5060728744939, Blast_Score=71, Evalue=9e-14,
Organism=Escherichia coli, GI1790399, Length=258, Percent_Identity=27.906976744186, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1787806, Length=144, Percent_Identity=29.1666666666667, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1788748, Length=299, Percent_Identity=27.0903010033445, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1788887, Length=145, Percent_Identity=31.0344827586207, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI48994962, Length=146, Percent_Identity=28.0821917808219, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1790208, Length=145, Percent_Identity=28.2758620689655, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32300; Mature: 32300

Theoretical pI: Translated: 8.23; Mature: 8.23

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
0.3 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
0.3 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKTLLDLDALQSFVRGVELGSFARAAEGLHRSTSAISAQLKKLEEQAGIPILQKNGRGL
CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCC
EPTPAGEALLSYARRLLELNDEAVQALKGAALAGSVRLGLAEDFGEGLLPDALGRFARAC
CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCHHEECCHHHHCCCCCHHHHHHHHHHC
PDVCVEVKVGRSQGLQQALRNGQLDLALLWSDGSHWPHQDQLGQIPLHWIASSATVARAP
HHHEEEEECCHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHCCCEEECCC
GQPVSLALFDPPCLARRQACDALDQAGLAWRVAVNGSSLASLWSAVRAGLGVTARAALCL
CCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCHHHEEEEC
PPDLKPLDATAAGLPPLQKLELALWRAQTPLPVAAEQLRLILRDGAAAQIAAGERAAPKP
CCCCCCCCCHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCEECCCCCCCCCC
RVPEAAA
CCCCCCC
>Mature Secondary Structure
MRKTLLDLDALQSFVRGVELGSFARAAEGLHRSTSAISAQLKKLEEQAGIPILQKNGRGL
CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCC
EPTPAGEALLSYARRLLELNDEAVQALKGAALAGSVRLGLAEDFGEGLLPDALGRFARAC
CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCHHEECCHHHHCCCCCHHHHHHHHHHC
PDVCVEVKVGRSQGLQQALRNGQLDLALLWSDGSHWPHQDQLGQIPLHWIASSATVARAP
HHHEEEEECCHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHCCCEEECCC
GQPVSLALFDPPCLARRQACDALDQAGLAWRVAVNGSSLASLWSAVRAGLGVTARAALCL
CCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCHHHEEEEC
PPDLKPLDATAAGLPPLQKLELALWRAQTPLPVAAEQLRLILRDGAAAQIAAGERAAPKP
CCCCCCCCCHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCEECCCCCCCCCC
RVPEAAA
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8626286 [H]