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The map label for this gene is rhaS [C]

Identifier: 34498711

GI number: 34498711

Start: 3542053

End: 3542730

Strand: Direct

Name: rhaS [C]

Synonym: CV_3256

Alternate gene names: 34498711

Gene position: 3542053-3542730 (Clockwise)

Preceding gene: 34498710

Following gene: 34498714

Centisome position: 74.55

GC content: 69.91

Gene sequence:

>678_bases
CTGCCCGACGTGGTGTTCGCGGTCAAGGATCTGGACAGCCGCTACCTGGCGCTCAGCGAAGGCTGCGTGCACCGCTGCGC
GCTGCGCAACCGCGTCCAGGCCGAGGGCCGCACCGCGCACGAGCTGTTTCCCCACGCGATGGCGAACCGCTACCGGGAAC
AGGACAGCCTGCTGTTCGCCGAACGGCTGCCGCTGCGCAACCGGCTGGACCTGACCGTCTACCCGGACGGCTCGCCCGGC
TGGTGCCTGACCAGCAAGCAGCCGCTGCTCCATCCTGACGGCCGCCTGCTGGGCCTGGTCTGCATCTCGAAAGACCTGGC
CGACCTCACCCGCGAAAGGCTGCTGGACGCGCGCTTCGCCGCCTGCGTCGATCACATCCAGGCCCACTACCACCGCCCGC
TGCACCTCGAGGAACTGTGCGATCTGTCCGGCCTCAGCATCGGCCAGCTGGACCGCAGGATGAAGCGGGTGTTCCAGCTG
TGCGCCGGCGATTTCATCCGCCGCACGCGGATGGAAGCCGCCTGCCACGCGATACGCCACAGCCGCCGTCCGCTGGCCGA
CATCGCCGCCGGCTGCGGTTTTTCCGACCAGAGCGCCCTCACCCGGCTATGCCGCCAGTTGCTGGGACTCAGTCCGCGCC
AGCTCCGCTGGCAGGCGCTGGCCGCGCAGCAGACCTGA

Upstream 100 bases:

>100_bases
TTTGCGCAAGGATCGTCCCATCATGAACATGCCCCTGCAGCAGCCGCATCTCGTCAGCGACCTGCCCGCCGTCCGCGCGA
TGGCCGCGCTGTTCGACCAC

Downstream 100 bases:

>100_bases
GCCACTGGTACATTCTTTCCATCGCGTCGCTGCGCAAGGCGTTCTCCGGCCGCGACAGCCACCATTGCGCGCCCGGCAGC
CTCGGATAGCCGGCCAGCGT

Product: regulatory protein

Products: NA

Alternate protein names: Transcriptional Regulator AraC Family; Transcriptional Regulator With PAS/PAC Sensors AraC Family; Transcriptional Regulator; Transcription Regulator; Transcriptional Regulator AraC; PAS Fold-4 Domain Protein; PAS Sensor Protein; AraC/XylS Family Transcriptional Regulator; Proline Utilization Regulator; Regulatory Protein; Transcriptional Regulator Transcription Regulator Protein; PAS Fold Family Protein

Number of amino acids: Translated: 225; Mature: 224

Protein sequence:

>225_residues
MPDVVFAVKDLDSRYLALSEGCVHRCALRNRVQAEGRTAHELFPHAMANRYREQDSLLFAERLPLRNRLDLTVYPDGSPG
WCLTSKQPLLHPDGRLLGLVCISKDLADLTRERLLDARFAACVDHIQAHYHRPLHLEELCDLSGLSIGQLDRRMKRVFQL
CAGDFIRRTRMEAACHAIRHSRRPLADIAAGCGFSDQSALTRLCRQLLGLSPRQLRWQALAAQQT

Sequences:

>Translated_225_residues
MPDVVFAVKDLDSRYLALSEGCVHRCALRNRVQAEGRTAHELFPHAMANRYREQDSLLFAERLPLRNRLDLTVYPDGSPG
WCLTSKQPLLHPDGRLLGLVCISKDLADLTRERLLDARFAACVDHIQAHYHRPLHLEELCDLSGLSIGQLDRRMKRVFQL
CAGDFIRRTRMEAACHAIRHSRRPLADIAAGCGFSDQSALTRLCRQLLGLSPRQLRWQALAAQQT
>Mature_224_residues
PDVVFAVKDLDSRYLALSEGCVHRCALRNRVQAEGRTAHELFPHAMANRYREQDSLLFAERLPLRNRLDLTVYPDGSPGW
CLTSKQPLLHPDGRLLGLVCISKDLADLTRERLLDARFAACVDHIQAHYHRPLHLEELCDLSGLSIGQLDRRMKRVFQLC
AGDFIRRTRMEAACHAIRHSRRPLADIAAGCGFSDQSALTRLCRQLLGLSPRQLRWQALAAQQT

Specific function: Positive Activator Of Genes Required For L-Rhamnose Utilization, Probably Of The Rhamnose Transporter Gene (Rhat). [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25530; Mature: 25399

Theoretical pI: Translated: 8.73; Mature: 8.73

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
4.5 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDVVFAVKDLDSRYLALSEGCVHRCALRNRVQAEGRTAHELFPHAMANRYREQDSLLFA
CCCCEEHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
ERLPLRNRLDLTVYPDGSPGWCLTSKQPLLHPDGRLLGLVCISKDLADLTRERLLDARFA
HHCCCCCCCCEEEEECCCCCEEECCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHH
ACVDHIQAHYHRPLHLEELCDLSGLSIGQLDRRMKRVFQLCAGDFIRRTRMEAACHAIRH
HHHHHHHHHCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SRRPLADIAAGCGFSDQSALTRLCRQLLGLSPRQLRWQALAAQQT
CCCCHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCC
>Mature Secondary Structure 
PDVVFAVKDLDSRYLALSEGCVHRCALRNRVQAEGRTAHELFPHAMANRYREQDSLLFA
CCCEEHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
ERLPLRNRLDLTVYPDGSPGWCLTSKQPLLHPDGRLLGLVCISKDLADLTRERLLDARFA
HHCCCCCCCCEEEEECCCCCEEECCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHH
ACVDHIQAHYHRPLHLEELCDLSGLSIGQLDRRMKRVFQLCAGDFIRRTRMEAACHAIRH
HHHHHHHHHCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SRRPLADIAAGCGFSDQSALTRLCRQLLGLSPRQLRWQALAAQQT
CCCCHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA