| Definition | Chromobacterium violaceum ATCC 12472 chromosome, complete genome. |
|---|---|
| Accession | NC_005085 |
| Length | 4,751,080 |
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The map label for this gene is pdtaS [H]
Identifier: 34498714
GI number: 34498714
Start: 3544985
End: 3546439
Strand: Direct
Name: pdtaS [H]
Synonym: CV_3259
Alternate gene names: 34498714
Gene position: 3544985-3546439 (Clockwise)
Preceding gene: 34498711
Following gene: 34498715
Centisome position: 74.61
GC content: 66.67
Gene sequence:
>1455_bases ATGCTCAACTGCGCCAGCGAAAACAGGACGCCCCTCTCGGGCTCGCTCCCTCTGCCCGGCATCCGGGAAAGCGATGTCTG CTTCGAGCTGCTGATCCAGTTTGTGGAAGACCACGCGATCATCCTGCTGGATCCGGACGGGCTGATCCGAAGCTGGAACG CCGGCGCGGAGCGCATCCACGGCCACACCGTTCCGCAGGCGCTGGGCCGCCATTTCAGCTGCTTGCTGCCGCCCGCGGAC GACGCCTACCTGCAGGCGATGCGCGAGCTGTCGCAGGCAGCTCAGGACGGCCGCTACGCCGGCGAGCGCTGGCACGTCCG CAACGACGGCAGCCGCTTTCTCGCCGACATTCTGCTGGTCCCGCTGCGGGACGCGGGCGGCGAGCTGCGCGGCTACGCCA AGATCACCCGCGACCTCAGCCATCGCAAACAGCTGGAGAATCGCTTCTGCCAGGTGGTCCAGGAATCGCCGAACGCGATG ATCATGATCAACGGCGCGGGCTCCATCATCCTGTCCAACCGCCTGGCCGAAGCGATGTTCGGCTATCCCGGCGACGAACT GCTGGGCATGAGCATCGAAAAACTGATGCCAGAGCGCTTCCGCGGCCGCCACGGCCACCTGCGCCAGGGTTTCCTGCGCC AGCCCGAAGCCCGGCCCATGGGGGTGGGCCGCGACCTGTACGGCCTGCGCAAGGACGGTTGCGAATTCCCGATCGAAATC GGCCTCAACCCCATCGAAACCGAGGCCGGTCCGATGGTGCTGGCCGGCATCGTCGACATCACCGCCCGCAAGCAGACGCA ACGCCAGCTGGAAACCGCTCTGCAAGAGAAAACCACGCTGCTGAACGAGGTCCACCACCGGGTCAAAAACAATCTGCAGG TGATCATCAGCCTGCTGAACATGCAGACCCAGTACGTGCGCGAGGAAAGCACCCGCGGCGTGCTGCAGGACAGCCAGGCG CGAGTGCGCTCGATGGCGCTGATACACCAGCTGCTGTACGAGCGCCACGATTTTTCCAAGGTGGACCTGGGCGAATACCT GCAGCGCTTCAACCACTTGCTGCTGAGCAGCTACGGCCAGCTGGCCAGCGGCCTGAAAGTGGAGCTGGACGCGCCGGCGG GGCTGGTCTGCATCGAACTGCAGCGGGCGACGCCCTGCGGCCTGCTGATCAACGAGCTGCTGACCAACGCGATCAAACAC GCCTATCCGGATGGGCAGGGCACCATCTGGATGCGGCTGGCCCGCCAGGACGAACGGCGGGCGCTGCTGGTCGTGGCCGA CCACGGCGTGGGACTGCCCGGCGCCGCCCCCGCCTCCCGGCCCAACTCGCTGGGCCTGCAGCTGGTGCCCATGCTGGCCG AACAGATGGGCGCCCGCCTGAACACGCTGGACAACCGGCCCGGCGTGCGCGTGGAGGTCAGCTTTCCGGTATTCGGCGCG GGAGAAGGCCAGTGA
Upstream 100 bases:
>100_bases TAAAAATACTAATGGCATGGAAATGCGATCGGCACTAACCCTATAACGGTATGACTGCTAGCCAAACGCCCGGATTCCAA GCCCCACGGACCTGTCAACC
Downstream 100 bases:
>100_bases AGAACGTGCGCATACTGATCGTCGAGGATGAGCGCATCATCGCCATGGACTTGCAGCTGCAGCTGCAGGCGCTCGGCTAC CAGATATGCGGCGTGGTGGC
Product: sensory transduction histidine kinase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 484; Mature: 484
Protein sequence:
>484_residues MLNCASENRTPLSGSLPLPGIRESDVCFELLIQFVEDHAIILLDPDGLIRSWNAGAERIHGHTVPQALGRHFSCLLPPAD DAYLQAMRELSQAAQDGRYAGERWHVRNDGSRFLADILLVPLRDAGGELRGYAKITRDLSHRKQLENRFCQVVQESPNAM IMINGAGSIILSNRLAEAMFGYPGDELLGMSIEKLMPERFRGRHGHLRQGFLRQPEARPMGVGRDLYGLRKDGCEFPIEI GLNPIETEAGPMVLAGIVDITARKQTQRQLETALQEKTTLLNEVHHRVKNNLQVIISLLNMQTQYVREESTRGVLQDSQA RVRSMALIHQLLYERHDFSKVDLGEYLQRFNHLLLSSYGQLASGLKVELDAPAGLVCIELQRATPCGLLINELLTNAIKH AYPDGQGTIWMRLARQDERRALLVVADHGVGLPGAAPASRPNSLGLQLVPMLAEQMGARLNTLDNRPGVRVEVSFPVFGA GEGQ
Sequences:
>Translated_484_residues MLNCASENRTPLSGSLPLPGIRESDVCFELLIQFVEDHAIILLDPDGLIRSWNAGAERIHGHTVPQALGRHFSCLLPPAD DAYLQAMRELSQAAQDGRYAGERWHVRNDGSRFLADILLVPLRDAGGELRGYAKITRDLSHRKQLENRFCQVVQESPNAM IMINGAGSIILSNRLAEAMFGYPGDELLGMSIEKLMPERFRGRHGHLRQGFLRQPEARPMGVGRDLYGLRKDGCEFPIEI GLNPIETEAGPMVLAGIVDITARKQTQRQLETALQEKTTLLNEVHHRVKNNLQVIISLLNMQTQYVREESTRGVLQDSQA RVRSMALIHQLLYERHDFSKVDLGEYLQRFNHLLLSSYGQLASGLKVELDAPAGLVCIELQRATPCGLLINELLTNAIKH AYPDGQGTIWMRLARQDERRALLVVADHGVGLPGAAPASRPNSLGLQLVPMLAEQMGARLNTLDNRPGVRVEVSFPVFGA GEGQ >Mature_484_residues MLNCASENRTPLSGSLPLPGIRESDVCFELLIQFVEDHAIILLDPDGLIRSWNAGAERIHGHTVPQALGRHFSCLLPPAD DAYLQAMRELSQAAQDGRYAGERWHVRNDGSRFLADILLVPLRDAGGELRGYAKITRDLSHRKQLENRFCQVVQESPNAM IMINGAGSIILSNRLAEAMFGYPGDELLGMSIEKLMPERFRGRHGHLRQGFLRQPEARPMGVGRDLYGLRKDGCEFPIEI GLNPIETEAGPMVLAGIVDITARKQTQRQLETALQEKTTLLNEVHHRVKNNLQVIISLLNMQTQYVREESTRGVLQDSQA RVRSMALIHQLLYERHDFSKVDLGEYLQRFNHLLLSSYGQLASGLKVELDAPAGLVCIELQRATPCGLLINELLTNAIKH AYPDGQGTIWMRLARQDERRALLVVADHGVGLPGAAPASRPNSLGLQLVPMLAEQMGARLNTLDNRPGVRVEVSFPVFGA GEGQ
Specific function: Member of the two-component regulatory system pdtaR/pdtaS. Autophosphorylates, probably on a histidine residue, and transfers its phosphate group to pdtaR [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 histidine kinase domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR022066 - InterPro: IPR011495 - InterPro: IPR005467 [H]
Pfam domain/function: PF12282 H_kinase_N; PF02518 HATPase_c; PF07568 HisKA_2 [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 53719; Mature: 53719
Theoretical pI: Translated: 6.92; Mature: 6.92
Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50109 HIS_KIN ; PS00678 WD_REPEATS_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLNCASENRTPLSGSLPLPGIRESDVCFELLIQFVEDHAIILLDPDGLIRSWNAGAERIH CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCHHCCCCCCHHHHC GHTVPQALGRHFSCLLPPADDAYLQAMRELSQAAQDGRYAGERWHVRNDGSRFLADILLV CCCHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHH PLRDAGGELRGYAKITRDLSHRKQLENRFCQVVQESPNAMIMINGAGSIILSNRLAEAMF HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEHHHHHHHHHH GYPGDELLGMSIEKLMPERFRGRHGHLRQGFLRQPEARPMGVGRDLYGLRKDGCEFPIEI CCCCHHHHCCCHHHHCHHHHCCCCCCHHHHHHCCCCCCCCCCCCHHHHHCCCCCCCCCEE GLNPIETEAGPMVLAGIVDITARKQTQRQLETALQEKTTLLNEVHHRVKNNLQVIISLLN CCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MQTQYVREESTRGVLQDSQARVRSMALIHQLLYERHDFSKVDLGEYLQRFNHLLLSSYGQ HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH LASGLKVELDAPAGLVCIELQRATPCGLLINELLTNAIKHAYPDGQGTIWMRLARQDERR HHCCCEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCC ALLVVADHGVGLPGAAPASRPNSLGLQLVPMLAEQMGARLNTLDNRPGVRVEVSFPVFGA EEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHCCCCCCCEEEEEECCEECC GEGQ CCCC >Mature Secondary Structure MLNCASENRTPLSGSLPLPGIRESDVCFELLIQFVEDHAIILLDPDGLIRSWNAGAERIH CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCHHCCCCCCHHHHC GHTVPQALGRHFSCLLPPADDAYLQAMRELSQAAQDGRYAGERWHVRNDGSRFLADILLV CCCHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHH PLRDAGGELRGYAKITRDLSHRKQLENRFCQVVQESPNAMIMINGAGSIILSNRLAEAMF HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEHHHHHHHHHH GYPGDELLGMSIEKLMPERFRGRHGHLRQGFLRQPEARPMGVGRDLYGLRKDGCEFPIEI CCCCHHHHCCCHHHHCHHHHCCCCCCHHHHHHCCCCCCCCCCCCHHHHHCCCCCCCCCEE GLNPIETEAGPMVLAGIVDITARKQTQRQLETALQEKTTLLNEVHHRVKNNLQVIISLLN CCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MQTQYVREESTRGVLQDSQARVRSMALIHQLLYERHDFSKVDLGEYLQRFNHLLLSSYGQ HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH LASGLKVELDAPAGLVCIELQRATPCGLLINELLTNAIKHAYPDGQGTIWMRLARQDERR HHCCCEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCC ALLVVADHGVGLPGAAPASRPNSLGLQLVPMLAEQMGARLNTLDNRPGVRVEVSFPVFGA EEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHCCCCCCCEEEEEECCEECC GEGQ CCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]