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The map label for this gene is yhjC [C]

Identifier: 34498709

GI number: 34498709

Start: 3538538

End: 3539443

Strand: Direct

Name: yhjC [C]

Synonym: CV_3254

Alternate gene names: 34498709

Gene position: 3538538-3539443 (Clockwise)

Preceding gene: 34498707

Following gene: 34498710

Centisome position: 74.48

GC content: 72.96

Gene sequence:

>906_bases
ATGCTGGATCTGAACGACGTCGCGCTGTTCGTACAAGTGGCCCGACTGGGCAGCTTCGCCGAGGCCGGCCGCCGACTGGG
GCTGCCGGCCAACACCGTCAGCCGCCGCATCCAGCAGCTGGAGAATGCGCTGGACAGCCGGCTGATGCAGCGCAGCACCC
GCAAATTGAGCCTGACCTCGGCCGGCGAAGCCTTCTACCAACGCTGCGCCGCCTCTGTGGACAGCCTGCTGGACGCCGGC
CAGGCGCAGACCGGCGACGGCGGGGAGCCCGGCGGACTGATCCGGGTGGCGGCCACCGCCGACTTCTTCGACTTCCTGCC
GATGGAGTGGGTGGCGGAATTCCTGGACGCGCACCCGCGGGTGAAGATCGAATTCGCGCTCAGCGACGCGCGGGCCGACC
TGATCGCCGACCGGATCGACGTCGCCTTCCGCGGCGGGGAACTGGCCGATTCCGGCTACGTCGCCCGCCGCCTGCCGGTG
GCGGGAGGAGGCGGGCTGGTGGCCAGCCCTGCCTACCTGGCCAGCCGCGGCGCGCCGGCCAGCCTGGCCGAACTGGCCGG
ACACGACTGCGTGACCACCCGCATCCCCGGCGAATGGACGACATGGAAACTGATCGGACCGGACGGCCGCGAGGAAGCGG
TCCAGGTCGGCGGCCGCTTCCGCGGCGACACCGCGCAGGCCCAGCGGCGCGCGGCGCTGGCGGGGCTCGGCATCGCCCTG
CTGCCTCCGGCGCTGGCCAGGCTGGACCTGGAGGCAGGCAGGCTGCGGCCTGTCCTGCCGCAATACCGCCGCCCCGGCCC
CGGGCTCAGCGTGCTCTACCCCAGCCGCAAGCATCTGCCGGCGGCGGTGAGCGCCTTCGTCGACATGGTGGTGGAGCGGC
TGTCGCGGAGCGCGCCGTCCGCCTGA

Upstream 100 bases:

>100_bases
GATGACGTCTGTTCGATGTATACAGCTTAGCCTCCGCGCCATTATCAAACTAGACGGTATAATTGGATTTAACTCATCCA
AAAAAAGAAGGAATGCCGCG

Downstream 100 bases:

>100_bases
GCGCATTTGGCAAATCTGCGCGCGGCGGCGAAAAGACTCGCCAAGAAATGCGCGGGGGCGCTTGGCATGATCTTCCGGTC
AGGGAAACGCCCTGACTTTC

Product: transcriptional regulator

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 301; Mature: 301

Protein sequence:

>301_residues
MLDLNDVALFVQVARLGSFAEAGRRLGLPANTVSRRIQQLENALDSRLMQRSTRKLSLTSAGEAFYQRCAASVDSLLDAG
QAQTGDGGEPGGLIRVAATADFFDFLPMEWVAEFLDAHPRVKIEFALSDARADLIADRIDVAFRGGELADSGYVARRLPV
AGGGGLVASPAYLASRGAPASLAELAGHDCVTTRIPGEWTTWKLIGPDGREEAVQVGGRFRGDTAQAQRRAALAGLGIAL
LPPALARLDLEAGRLRPVLPQYRRPGPGLSVLYPSRKHLPAAVSAFVDMVVERLSRSAPSA

Sequences:

>Translated_301_residues
MLDLNDVALFVQVARLGSFAEAGRRLGLPANTVSRRIQQLENALDSRLMQRSTRKLSLTSAGEAFYQRCAASVDSLLDAG
QAQTGDGGEPGGLIRVAATADFFDFLPMEWVAEFLDAHPRVKIEFALSDARADLIADRIDVAFRGGELADSGYVARRLPV
AGGGGLVASPAYLASRGAPASLAELAGHDCVTTRIPGEWTTWKLIGPDGREEAVQVGGRFRGDTAQAQRRAALAGLGIAL
LPPALARLDLEAGRLRPVLPQYRRPGPGLSVLYPSRKHLPAAVSAFVDMVVERLSRSAPSA
>Mature_301_residues
MLDLNDVALFVQVARLGSFAEAGRRLGLPANTVSRRIQQLENALDSRLMQRSTRKLSLTSAGEAFYQRCAASVDSLLDAG
QAQTGDGGEPGGLIRVAATADFFDFLPMEWVAEFLDAHPRVKIEFALSDARADLIADRIDVAFRGGELADSGYVARRLPV
AGGGGLVASPAYLASRGAPASLAELAGHDCVTTRIPGEWTTWKLIGPDGREEAVQVGGRFRGDTAQAQRRAALAGLGIAL
LPPALARLDLEAGRLRPVLPQYRRPGPGLSVLYPSRKHLPAAVSAFVDMVVERLSRSAPSA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=296, Percent_Identity=33.445945945946, Blast_Score=137, Evalue=1e-33,
Organism=Escherichia coli, GI1786401, Length=297, Percent_Identity=29.96632996633, Blast_Score=131, Evalue=5e-32,
Organism=Escherichia coli, GI1787128, Length=290, Percent_Identity=28.6206896551724, Blast_Score=129, Evalue=3e-31,
Organism=Escherichia coli, GI1789639, Length=290, Percent_Identity=28.2758620689655, Blast_Score=124, Evalue=7e-30,
Organism=Escherichia coli, GI1787589, Length=289, Percent_Identity=28.3737024221453, Blast_Score=118, Evalue=4e-28,
Organism=Escherichia coli, GI1789440, Length=266, Percent_Identity=30.8270676691729, Blast_Score=117, Evalue=8e-28,
Organism=Escherichia coli, GI87081978, Length=302, Percent_Identity=28.1456953642384, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI1786448, Length=301, Percent_Identity=26.2458471760797, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1789173, Length=266, Percent_Identity=27.4436090225564, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI1787601, Length=122, Percent_Identity=31.1475409836066, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1788748, Length=158, Percent_Identity=32.9113924050633, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32008; Mature: 32008

Theoretical pI: Translated: 8.71; Mature: 8.71

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDLNDVALFVQVARLGSFAEAGRRLGLPANTVSRRIQQLENALDSRLMQRSTRKLSLTS
CCCHHHHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEECCH
AGEAFYQRCAASVDSLLDAGQAQTGDGGEPGGLIRVAATADFFDFLPMEWVAEFLDAHPR
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEHHHHHHCCCHHHHHHHHCCCCC
VKIEFALSDARADLIADRIDVAFRGGELADSGYVARRLPVAGGGGLVASPAYLASRGAPA
EEEEEEECHHHHHHHHHHHHHEECCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHCCCCCH
SLAELAGHDCVTTRIPGEWTTWKLIGPDGREEAVQVGGRFRGDTAQAQRRAALAGLGIAL
HHHHHCCCCEEEECCCCCCCEEEEECCCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCHHH
LPPALARLDLEAGRLRPVLPQYRRPGPGLSVLYPSRKHLPAAVSAFVDMVVERLSRSAPS
HCHHHHHHCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCC
A
C
>Mature Secondary Structure
MLDLNDVALFVQVARLGSFAEAGRRLGLPANTVSRRIQQLENALDSRLMQRSTRKLSLTS
CCCHHHHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEECCH
AGEAFYQRCAASVDSLLDAGQAQTGDGGEPGGLIRVAATADFFDFLPMEWVAEFLDAHPR
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEHHHHHHCCCHHHHHHHHCCCCC
VKIEFALSDARADLIADRIDVAFRGGELADSGYVARRLPVAGGGGLVASPAYLASRGAPA
EEEEEEECHHHHHHHHHHHHHEECCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHCCCCCH
SLAELAGHDCVTTRIPGEWTTWKLIGPDGREEAVQVGGRFRGDTAQAQRRAALAGLGIAL
HHHHHCCCCEEEECCCCCCCEEEEECCCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCHHH
LPPALARLDLEAGRLRPVLPQYRRPGPGLSVLYPSRKHLPAAVSAFVDMVVERLSRSAPS
HCHHHHHHCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCC
A
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800 [H]