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The map label for this gene is radC [C]

Identifier: 34498534

GI number: 34498534

Start: 3354739

End: 3355413

Strand: Reverse

Name: radC [C]

Synonym: CV_3079

Alternate gene names: 34498534

Gene position: 3355413-3354739 (Counterclockwise)

Preceding gene: 34498538

Following gene: 34498533

Centisome position: 70.62

GC content: 63.85

Gene sequence:

>675_bases
ATGTCTATCGCCAGTTGGCCCGAGTCCGAGCGTCCGCGGGAGAAATTGTTGTCGCAGGGCGCCGCGACGCTGAACGATTC
CGAGCTGCTGGCCATCTTCCTGCGCACCGGCATCAAGGGCGTCAACGCGGTGGAGCTGGCGCGGCGGCTGTTGCAGGAGT
TCGGTTCTCTTTCGGCATTGTTGGCCGCGCCGCTGCCGGCGTTCAAGGCCAAGCCGGGTCTGGGCGAAGCCAAGTACGCG
CAGTTGATGGCATGCACCGAGCTGGCGCGGCGCGCGCTGTCGGAGCAGATGAGGCTGGGCGACGCGCTGTCCAGCCCGCA
GCAGGTGAGGGACTACCTGAGGCTGAGCATAGGCCGGCGCGAGGTCGAAACATTTGTTGTGATTTTTTTGTCGGCACAAA
ACCGGCTGATCGAAGTCGAAGAAGTGTTCAAGGGAACCTTGACCGAGACCCGGGTGTATCCGCGGGAAGTGTTGCGGCGG
GCATTGCGGCACAACGCGGCGGCGCTGATCATCGCGCACAATCACCCGTCAGGCGTCAGCGAGCCGTCCAGCGCCGACCG
GGTGCTGACCGACACGCTCAAGCGGGCGCTGGAACTGGTCGATATCAGGTTACTTGACCATTTTGTCGTAACCGGCGGGC
ACGCGGAATCGTTCGCCGAGCGTGGCTGGCTGTAG

Upstream 100 bases:

>100_bases
CATGTCGTCCGCAGTTCATGCCAATGTTAATGTCATTGCCTGCTTCTATCTTGTTGGCCTGACCCCACAAACAATGCTAT
AGCCAGAAGGAGGATGCGTG

Downstream 100 bases:

>100_bases
AAGTGGAGTGAACACGCGGAGCCCGATGCGATGGCGGTTCGACAGTGCCGCCCCAGATGACGGAGTCCGCGAACAATAAC
TGTCTGCTTGACCTTGTTCT

Product: DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 224; Mature: 223

Protein sequence:

>224_residues
MSIASWPESERPREKLLSQGAATLNDSELLAIFLRTGIKGVNAVELARRLLQEFGSLSALLAAPLPAFKAKPGLGEAKYA
QLMACTELARRALSEQMRLGDALSSPQQVRDYLRLSIGRREVETFVVIFLSAQNRLIEVEEVFKGTLTETRVYPREVLRR
ALRHNAAALIIAHNHPSGVSEPSSADRVLTDTLKRALELVDIRLLDHFVVTGGHAESFAERGWL

Sequences:

>Translated_224_residues
MSIASWPESERPREKLLSQGAATLNDSELLAIFLRTGIKGVNAVELARRLLQEFGSLSALLAAPLPAFKAKPGLGEAKYA
QLMACTELARRALSEQMRLGDALSSPQQVRDYLRLSIGRREVETFVVIFLSAQNRLIEVEEVFKGTLTETRVYPREVLRR
ALRHNAAALIIAHNHPSGVSEPSSADRVLTDTLKRALELVDIRLLDHFVVTGGHAESFAERGWL
>Mature_223_residues
SIASWPESERPREKLLSQGAATLNDSELLAIFLRTGIKGVNAVELARRLLQEFGSLSALLAAPLPAFKAKPGLGEAKYAQ
LMACTELARRALSEQMRLGDALSSPQQVRDYLRLSIGRREVETFVVIFLSAQNRLIEVEEVFKGTLTETRVYPREVLRRA
LRHNAAALIIAHNHPSGVSEPSSADRVLTDTLKRALELVDIRLLDHFVVTGGHAESFAERGWL

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family

Homologues:

Organism=Escherichia coli, GI87082300, Length=213, Percent_Identity=46.4788732394366, Blast_Score=206, Evalue=1e-54,
Organism=Escherichia coli, GI1788997, Length=125, Percent_Identity=50.4, Blast_Score=130, Evalue=7e-32,
Organism=Escherichia coli, GI2367100, Length=137, Percent_Identity=50.3649635036496, Blast_Score=127, Evalue=5e-31,
Organism=Escherichia coli, GI1788312, Length=125, Percent_Identity=51.2, Blast_Score=127, Evalue=6e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y3079_CHRVO (Q7NTH5)

Other databases:

- EMBL:   AE016825
- RefSeq:   NP_902749.1
- ProteinModelPortal:   Q7NTH5
- SMR:   Q7NTH5
- GeneID:   2548970
- GenomeReviews:   AE016825_GR
- KEGG:   cvi:CV_3079
- NMPDR:   fig|243365.1.peg.3079
- HOGENOM:   HBG751042
- OMA:   HAAMAHE
- PhylomeDB:   Q7NTH5
- BioCyc:   CVIO243365:CV_3079-MONOMER
- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891
- TIGRFAMs:   TIGR00608

Pfam domain/function: PF04002 DUF2466; SSF47781 RuvA_2_like

EC number: NA

Molecular weight: Translated: 24808; Mature: 24677

Theoretical pI: Translated: 9.12; Mature: 9.12

Prosite motif: PS01302 UPF0758

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIASWPESERPREKLLSQGAATLNDSELLAIFLRTGIKGVNAVELARRLLQEFGSLSAL
CCCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
LAAPLPAFKAKPGLGEAKYAQLMACTELARRALSEQMRLGDALSSPQQVRDYLRLSIGRR
HHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCHH
EVETFVVIFLSAQNRLIEVEEVFKGTLTETRVYPREVLRRALRHNAAALIIAHNHPSGVS
HHHHHHHEEEECCCCEEHHHHHHHHHHHHHHCCHHHHHHHHHHCCCEEEEEEECCCCCCC
EPSSADRVLTDTLKRALELVDIRLLDHFVVTGGHAESFAERGWL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCC
>Mature Secondary Structure 
SIASWPESERPREKLLSQGAATLNDSELLAIFLRTGIKGVNAVELARRLLQEFGSLSAL
CCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
LAAPLPAFKAKPGLGEAKYAQLMACTELARRALSEQMRLGDALSSPQQVRDYLRLSIGRR
HHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCHH
EVETFVVIFLSAQNRLIEVEEVFKGTLTETRVYPREVLRRALRHNAAALIIAHNHPSGVS
HHHHHHHEEEECCCCEEHHHHHHHHHHHHHHCCHHHHHHHHHHCCCEEEEEEECCCCCCC
EPSSADRVLTDTLKRALELVDIRLLDHFVVTGGHAESFAERGWL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 14500782