Click here to switch to the map view.

The map label for this gene is 34498525

Identifier: 34498525

GI number: 34498525

Start: 3347973

End: 3348503

Strand: Direct

Name: 34498525

Synonym: CV_3070

Alternate gene names: NA

Gene position: 3347973-3348503 (Clockwise)

Preceding gene: 34498524

Following gene: 34498527

Centisome position: 70.47

GC content: 65.35

Gene sequence:

>531_bases
TTGCGGCATCGGCCACTCATCGCAAACAGGCTCTTGCGGCGCGCCGCGCCGCGCCGCCATCCGACAAGCACGACACGCAT
TCGAGACGCCATGAACAAGATACTGACCGCGCTGCTGCTGGCAGCCATCGCCATTCCCGCCGCCCACGCCGACACCCCCG
CCGAAATTCGCGGCCAGGCATTCAAGAAGATGCTGCTGCAATCGTTCGAGCCCATGGGCATGGCGGTGCGCGAGCGCGCG
CCCTATGACAAGGCCAAGTTCGAGCAGCAGGCGGAAGCGATGAAGACGCTGGCCGCGGAGCCGTTCAAGCACTTCCCGGC
GAACAGCATCAGCGGCAAGAGCCGCGCCAAGCCGGAAATCTGGAGCCAGCCGGCCAAGTTCCAGGCCGACCGCGACGCCT
TCCTGAAATCGGTGGACAACCTCGCCGCCGTCGCCAAGGCCGGCGATCTGGCCGCCATCAAGAAGGCCTACGGCCAGGTG
GCGCAAAACTGCAAGACCTGTCACGACGCCTTCCGCGGCCCGGAAAAATAA

Upstream 100 bases:

>100_bases
CACAAGGATTTCCGCAAGGATTGATCCGCCCGGGCCGCCCACCCGGCCCCATTTCCCGCCGTCATCGATATAATCGGCTG
AGCGCCTGTTTACGATCTTT

Downstream 100 bases:

>100_bases
GCGCCCGGCGCGGTGGAAAGCAAAAAGCCGGCGATTGCCGGCTTTGTCGTTTTCCGCGGAAGCGCTTCAGCGCAGCAGCG
CGAAATACAGGCCGCCCGCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 176; Mature: 176

Protein sequence:

>176_residues
MRHRPLIANRLLRRAAPRRHPTSTTRIRDAMNKILTALLLAAIAIPAAHADTPAEIRGQAFKKMLLQSFEPMGMAVRERA
PYDKAKFEQQAEAMKTLAAEPFKHFPANSISGKSRAKPEIWSQPAKFQADRDAFLKSVDNLAAVAKAGDLAAIKKAYGQV
AQNCKTCHDAFRGPEK

Sequences:

>Translated_176_residues
MRHRPLIANRLLRRAAPRRHPTSTTRIRDAMNKILTALLLAAIAIPAAHADTPAEIRGQAFKKMLLQSFEPMGMAVRERA
PYDKAKFEQQAEAMKTLAAEPFKHFPANSISGKSRAKPEIWSQPAKFQADRDAFLKSVDNLAAVAKAGDLAAIKKAYGQV
AQNCKTCHDAFRGPEK
>Mature_176_residues
MRHRPLIANRLLRRAAPRRHPTSTTRIRDAMNKILTALLLAAIAIPAAHADTPAEIRGQAFKKMLLQSFEPMGMAVRERA
PYDKAKFEQQAEAMKTLAAEPFKHFPANSISGKSRAKPEIWSQPAKFQADRDAFLKSVDNLAAVAKAGDLAAIKKAYGQV
AQNCKTCHDAFRGPEK

Specific function: Cytochrome c' is the most widely occurring bacterial c- type cytochrome. Cytochromes c' are high-spin proteins and the heme has no sixth ligand. Their exact function is not known [H]

COG id: COG3909

COG function: function code C; Cytochrome c556

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010980
- InterPro:   IPR002321
- InterPro:   IPR012127
- InterPro:   IPR015984 [H]

Pfam domain/function: PF01322 Cytochrom_C_2 [H]

EC number: NA

Molecular weight: Translated: 19458; Mature: 19458

Theoretical pI: Translated: 11.00; Mature: 11.00

Prosite motif: PS51009 CYTCII

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRHRPLIANRLLRRAAPRRHPTSTTRIRDAMNKILTALLLAAIAIPAAHADTPAEIRGQA
CCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
FKKMLLQSFEPMGMAVRERAPYDKAKFEQQAEAMKTLAAEPFKHFPANSISGKSRAKPEI
HHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHH
WSQPAKFQADRDAFLKSVDNLAAVAKAGDLAAIKKAYGQVAQNCKTCHDAFRGPEK
HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MRHRPLIANRLLRRAAPRRHPTSTTRIRDAMNKILTALLLAAIAIPAAHADTPAEIRGQA
CCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
FKKMLLQSFEPMGMAVRERAPYDKAKFEQQAEAMKTLAAEPFKHFPANSISGKSRAKPEI
HHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHH
WSQPAKFQADRDAFLKSVDNLAAVAKAGDLAAIKKAYGQVAQNCKTCHDAFRGPEK
HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 4360249; 11060017; 11300792 [H]