| Definition | Chromobacterium violaceum ATCC 12472 chromosome, complete genome. |
|---|---|
| Accession | NC_005085 |
| Length | 4,751,080 |
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The map label for this gene is 34498478
Identifier: 34498478
GI number: 34498478
Start: 3300302
End: 3301090
Strand: Reverse
Name: 34498478
Synonym: CV_3023
Alternate gene names: NA
Gene position: 3301090-3300302 (Counterclockwise)
Preceding gene: 34498479
Following gene: 34498477
Centisome position: 69.48
GC content: 68.06
Gene sequence:
>789_bases ATGAGGGGTGGGCAAACGAACCTCCGGCTATGGGCCGGCCTGCTGCTGGCCTGCGCCGGCGCGCAGGCGCAGGCGCAGGC GGCGTCGCGCGAGCTGTATTTCGTCACCCAGCTGTTTCCGCCCTTCATCACCCAGAGCGCCGACGGCAAGCTGGACGGCG CCTTGGTGGCCATCCTGCGCGAAGCCTGCCGGCGGGCAGACTGGAACTGCAAGGTCCAGGCCATGGTGTGGAAACGCGCG CTGCTGACTGTCAGCCAGGGCGGCGCCGACGGGTTGGTGCTGGCGCAGGACGCGCCGGAGCGGCGCGCGGTGATGGAGCT GTCCAAGCCGGTGCTGGCCAGCAGCTACGGCCTTTATGTGAAAGCCGACAGCGCCATGCGCTACAGGCAGCCTGCCGATC TCGCCGGCAAAACTTTGGCGGTGTACGGCCCGTCGCTGTCGCAGATCAATAGCGAGCGCCTGGTCCAGGGCGTGGCCGGC GTGAACCTGACCGTGGAGCTGGACCCGGAAACGGTGCTGCGCAAGTTGGGGGCGGGCCGTTACGGCCATAACGCGGTGGC GTTTTCCAATGACGATGTCGCCCGTTACTGGATCAAGCGCGACGGCCTGGGCAATCTGCGCAAGCTGGCCGAGGTCAAGC CACTGACTTACCTGTACGGCTTCACCCGCAGCCGGGTGAAGCCCGGCATGCTGGAAACGTTCAACCGCGCGCTGGACAGC ATGTGCCGCGACGGCAGCCTGGCCAGGCTGGCCGCGCCGTCCGGCATCCGGCTGGCCACTTGCCGCTGA
Upstream 100 bases:
>100_bases TGGCAGCGGCCGTCGCTGGCCGCTTGGCGCGGCCGGCAGGCTCGCTGATCCGGCCCGACTCTCTCTATACTGCCGGTAAA GAAGAGCGGGGACGGAGACG
Downstream 100 bases:
>100_bases GTGCGGCAAGGACGAGTCAAAGCGGTTATCATTCAGGCATTCCCTAGCCGCCGCCGGCGGCGCCACACGCAGCGCAGAAC AAGCATAATCATGTCGCAAC
Product: amino acid ABC transporter substrate-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 262; Mature: 262
Protein sequence:
>262_residues MRGGQTNLRLWAGLLLACAGAQAQAQAASRELYFVTQLFPPFITQSADGKLDGALVAILREACRRADWNCKVQAMVWKRA LLTVSQGGADGLVLAQDAPERRAVMELSKPVLASSYGLYVKADSAMRYRQPADLAGKTLAVYGPSLSQINSERLVQGVAG VNLTVELDPETVLRKLGAGRYGHNAVAFSNDDVARYWIKRDGLGNLRKLAEVKPLTYLYGFTRSRVKPGMLETFNRALDS MCRDGSLARLAAPSGIRLATCR
Sequences:
>Translated_262_residues MRGGQTNLRLWAGLLLACAGAQAQAQAASRELYFVTQLFPPFITQSADGKLDGALVAILREACRRADWNCKVQAMVWKRA LLTVSQGGADGLVLAQDAPERRAVMELSKPVLASSYGLYVKADSAMRYRQPADLAGKTLAVYGPSLSQINSERLVQGVAG VNLTVELDPETVLRKLGAGRYGHNAVAFSNDDVARYWIKRDGLGNLRKLAEVKPLTYLYGFTRSRVKPGMLETFNRALDS MCRDGSLARLAAPSGIRLATCR >Mature_262_residues MRGGQTNLRLWAGLLLACAGAQAQAQAASRELYFVTQLFPPFITQSADGKLDGALVAILREACRRADWNCKVQAMVWKRA LLTVSQGGADGLVLAQDAPERRAVMELSKPVLASSYGLYVKADSAMRYRQPADLAGKTLAVYGPSLSQINSERLVQGVAG VNLTVELDPETVLRKLGAGRYGHNAVAFSNDDVARYWIKRDGLGNLRKLAEVKPLTYLYGFTRSRVKPGMLETFNRALDS MCRDGSLARLAAPSGIRLATCR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28492; Mature: 28492
Theoretical pI: Translated: 10.18; Mature: 10.18
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRGGQTNLRLWAGLLLACAGAQAQAQAASRELYFVTQLFPPFITQSADGKLDGALVAILR CCCCCCHHHHHHHHHHHHCCCCHHHHHHCCCEEEHHHHCCHHHCCCCCCCHHHHHHHHHH EACRRADWNCKVQAMVWKRALLTVSQGGADGLVLAQDAPERRAVMELSKPVLASSYGLYV HHHHCCCCCCEEHHHHHHHHHHHEECCCCCCEEEECCCCHHHHHHHHHCCHHHCCCCEEE KADSAMRYRQPADLAGKTLAVYGPSLSQINSERLVQGVAGVNLTVELDPETVLRKLGAGR EECCCHHHCCCCCCCCCEEEEECCCHHHCCHHHHHHHHCCCEEEEEECHHHHHHHHCCCC YGHNAVAFSNDDVARYWIKRDGLGNLRKLAEVKPLTYLYGFTRSRVKPGMLETFNRALDS CCCCEEEECCCCHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHH MCRDGSLARLAAPSGIRLATCR HHCCCCEEEEECCCCCEEEECC >Mature Secondary Structure MRGGQTNLRLWAGLLLACAGAQAQAQAASRELYFVTQLFPPFITQSADGKLDGALVAILR CCCCCCHHHHHHHHHHHHCCCCHHHHHHCCCEEEHHHHCCHHHCCCCCCCHHHHHHHHHH EACRRADWNCKVQAMVWKRALLTVSQGGADGLVLAQDAPERRAVMELSKPVLASSYGLYV HHHHCCCCCCEEHHHHHHHHHHHEECCCCCCEEEECCCCHHHHHHHHHCCHHHCCCCEEE KADSAMRYRQPADLAGKTLAVYGPSLSQINSERLVQGVAGVNLTVELDPETVLRKLGAGR EECCCHHHCCCCCCCCCEEEEECCCHHHCCHHHHHHHHCCCEEEEEECHHHHHHHHCCCC YGHNAVAFSNDDVARYWIKRDGLGNLRKLAEVKPLTYLYGFTRSRVKPGMLETFNRALDS CCCCEEEECCCCHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHH MCRDGSLARLAAPSGIRLATCR HHCCCCEEEEECCCCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA