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The map label for this gene is yhcM [H]

Identifier: 34498477

GI number: 34498477

Start: 3299048

End: 3300211

Strand: Reverse

Name: yhcM [H]

Synonym: CV_3022

Alternate gene names: 34498477

Gene position: 3300211-3299048 (Counterclockwise)

Preceding gene: 34498478

Following gene: 34498475

Centisome position: 69.46

GC content: 65.03

Gene sequence:

>1164_bases
ATGTCGCAACACGCATTCTCTCCGGACGAAAACGTCCATCTCAGCCCCAAGGGCTGGTATCGGCAGGCCAGCGAGAAGCC
TGGCTTCATCCACGACGCGGCCCAGGCCGCCGCCATCGAGCAGCTGGACCGCCTGTGGCACGAGCTGGTGGATTTCAAGA
GCAAGCGCAACCGTTTCCTGGGGCGCAGCCTGAGGAGCCCTCAGGTGCCGCGAGGATTGTATTTCTGGGGCGGAGTGGGG
CGCGGCAAGAGCTTCCTGATGGATGCCTTCTACGCCTGCGTGCCCTACCGCCGCAAGCGCCGCATCCACTTCCACCACTT
CATGGCGGAAACCCATCGCGAGCTGAGGAAGTTCGCCGGCGGCAAGGACCCGCTGCTGGCCTACGCCGACCAGATCGCCA
AGGCGACGCGGCTGCTGTGCTTCGACGAGTTCCACGTCTCCGACATCGCCGACGCGATGATACTGGGCCGGCTGCTGTCG
GCGCTGCTGGAGCGCGGCGTGGTGGTGGTGACCACTTCCAACTACGCGCCGGACGATCTCTACCCGGGCGGCCTGCAGCG
GCAGAATTTCCTGCCGACGATAGAACTGATCAAGCGCGAGCTGGACGTGCTGAACGTGGACGGCGGACATGACTACCGGC
TGCGCGAGCTGACGCGGGAGCCGCTGTTCATGGTGCCGGCGGACGCGGCCAACGAAGGGAAGATGGAGCAGCTGTTCCGG
CGGGTGAGCACCGGCGCGGAGCTGGCGCAAAAGTCCATCACCGTGCTGGAGCGGGAGATCGCGGTGAAGCGGATGTCGCC
GGGCGTGATCTGGTTCGATTTCATGGCCTTGTGCGACGGTCCGCGCGCGCAGACCGATTACCTGGAAATCGCCAGCGAAT
ACCATACGGTCTTCCTGTCCGGCATTCCCAGGCTCAGCGCCAAGCAGGCATCGATCGCCCGCCGCTTCACTTGGCTGGTG
GACGTGTTCTACGACAACCGCGTCAAGCTGATCGCCTCGGCCGACGCGCCGCCGGAGGCGATCTATACCGAAGGCCTGCA
GTCCGGCGAATTTTTCCGCACCGCCAGCCGGCTGACCGAGATGCAGTCCAAGAGTTATCTGGAGCTGCCGCACCAGTCGA
TGACGCAAAGCCACGACCAGCCGCCGCCGGGCGTGGCGCTGTAA

Upstream 100 bases:

>100_bases
TTGCCGCTGAGTGCGGCAAGGACGAGTCAAAGCGGTTATCATTCAGGCATTCCCTAGCCGCCGCCGGCGGCGCCACACGC
AGCGCAGAACAAGCATAATC

Downstream 100 bases:

>100_bases
GGGGCCCGCGCGCGCTCAGTTGCGCGCCGGCTGCAGGTCCAGCTCCAGGATGTGGTCGGCGATCATGATGTCGCGGGCCA
GGTCCACCACGCTGATGTAG

Product: nucleotide-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 387; Mature: 386

Protein sequence:

>387_residues
MSQHAFSPDENVHLSPKGWYRQASEKPGFIHDAAQAAAIEQLDRLWHELVDFKSKRNRFLGRSLRSPQVPRGLYFWGGVG
RGKSFLMDAFYACVPYRRKRRIHFHHFMAETHRELRKFAGGKDPLLAYADQIAKATRLLCFDEFHVSDIADAMILGRLLS
ALLERGVVVVTTSNYAPDDLYPGGLQRQNFLPTIELIKRELDVLNVDGGHDYRLRELTREPLFMVPADAANEGKMEQLFR
RVSTGAELAQKSITVLEREIAVKRMSPGVIWFDFMALCDGPRAQTDYLEIASEYHTVFLSGIPRLSAKQASIARRFTWLV
DVFYDNRVKLIASADAPPEAIYTEGLQSGEFFRTASRLTEMQSKSYLELPHQSMTQSHDQPPPGVAL

Sequences:

>Translated_387_residues
MSQHAFSPDENVHLSPKGWYRQASEKPGFIHDAAQAAAIEQLDRLWHELVDFKSKRNRFLGRSLRSPQVPRGLYFWGGVG
RGKSFLMDAFYACVPYRRKRRIHFHHFMAETHRELRKFAGGKDPLLAYADQIAKATRLLCFDEFHVSDIADAMILGRLLS
ALLERGVVVVTTSNYAPDDLYPGGLQRQNFLPTIELIKRELDVLNVDGGHDYRLRELTREPLFMVPADAANEGKMEQLFR
RVSTGAELAQKSITVLEREIAVKRMSPGVIWFDFMALCDGPRAQTDYLEIASEYHTVFLSGIPRLSAKQASIARRFTWLV
DVFYDNRVKLIASADAPPEAIYTEGLQSGEFFRTASRLTEMQSKSYLELPHQSMTQSHDQPPPGVAL
>Mature_386_residues
SQHAFSPDENVHLSPKGWYRQASEKPGFIHDAAQAAAIEQLDRLWHELVDFKSKRNRFLGRSLRSPQVPRGLYFWGGVGR
GKSFLMDAFYACVPYRRKRRIHFHHFMAETHRELRKFAGGKDPLLAYADQIAKATRLLCFDEFHVSDIADAMILGRLLSA
LLERGVVVVTTSNYAPDDLYPGGLQRQNFLPTIELIKRELDVLNVDGGHDYRLRELTREPLFMVPADAANEGKMEQLFRR
VSTGAELAQKSITVLEREIAVKRMSPGVIWFDFMALCDGPRAQTDYLEIASEYHTVFLSGIPRLSAKQASIARRFTWLVD
VFYDNRVKLIASADAPPEAIYTEGLQSGEFFRTASRLTEMQSKSYLELPHQSMTQSHDQPPPGVAL

Specific function: Unknown

COG id: COG1485

COG function: function code R; Predicted ATPase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AFG1 ATPase family [H]

Homologues:

Organism=Homo sapiens, GI21918872, Length=388, Percent_Identity=36.0824742268041, Blast_Score=232, Evalue=5e-61,
Organism=Escherichia coli, GI1789627, Length=369, Percent_Identity=40.1084010840108, Blast_Score=275, Evalue=4e-75,
Organism=Caenorhabditis elegans, GI17505769, Length=356, Percent_Identity=33.4269662921348, Blast_Score=207, Evalue=1e-53,
Organism=Saccharomyces cerevisiae, GI6320783, Length=320, Percent_Identity=35.625, Blast_Score=173, Evalue=3e-44,
Organism=Drosophila melanogaster, GI20129913, Length=424, Percent_Identity=31.6037735849057, Blast_Score=202, Evalue=3e-52,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005654 [H]

Pfam domain/function: PF03969 AFG1_ATPase [H]

EC number: NA

Molecular weight: Translated: 44004; Mature: 43873

Theoretical pI: Translated: 8.44; Mature: 8.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQHAFSPDENVHLSPKGWYRQASEKPGFIHDAAQAAAIEQLDRLWHELVDFKSKRNRFL
CCCCCCCCCCCEEECCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GRSLRSPQVPRGLYFWGGVGRGKSFLMDAFYACVPYRRKRRIHFHHFMAETHRELRKFAG
HHCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCC
GKDPLLAYADQIAKATRLLCFDEFHVSDIADAMILGRLLSALLERGVVVVTTSNYAPDDL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCC
YPGGLQRQNFLPTIELIKRELDVLNVDGGHDYRLRELTREPLFMVPADAANEGKMEQLFR
CCCCCCCCCCCCHHHHHHHHHCEEECCCCCCHHHHHHCCCCEEEECCCCCCCCHHHHHHH
RVSTGAELAQKSITVLEREIAVKRMSPGVIWFDFMALCDGPRAQTDYLEIASEYHTVFLS
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
GIPRLSAKQASIARRFTWLVDVFYDNRVKLIASADAPPEAIYTEGLQSGEFFRTASRLTE
CCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHH
MQSKSYLELPHQSMTQSHDQPPPGVAL
HHCCHHHHCCCHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
SQHAFSPDENVHLSPKGWYRQASEKPGFIHDAAQAAAIEQLDRLWHELVDFKSKRNRFL
CCCCCCCCCCEEECCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GRSLRSPQVPRGLYFWGGVGRGKSFLMDAFYACVPYRRKRRIHFHHFMAETHRELRKFAG
HHCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCC
GKDPLLAYADQIAKATRLLCFDEFHVSDIADAMILGRLLSALLERGVVVVTTSNYAPDDL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCC
YPGGLQRQNFLPTIELIKRELDVLNVDGGHDYRLRELTREPLFMVPADAANEGKMEQLFR
CCCCCCCCCCCCHHHHHHHHHCEEECCCCCCHHHHHHCCCCEEEECCCCCCCCHHHHHHH
RVSTGAELAQKSITVLEREIAVKRMSPGVIWFDFMALCDGPRAQTDYLEIASEYHTVFLS
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
GIPRLSAKQASIARRFTWLVDVFYDNRVKLIASADAPPEAIYTEGLQSGEFFRTASRLTE
CCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHH
MQSKSYLELPHQSMTQSHDQPPPGVAL
HHCCHHHHCCCHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]