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The map label for this gene is 34498428

Identifier: 34498428

GI number: 34498428

Start: 3250786

End: 3251349

Strand: Reverse

Name: 34498428

Synonym: CV_2973

Alternate gene names: NA

Gene position: 3251349-3250786 (Counterclockwise)

Preceding gene: 34498429

Following gene: 34498427

Centisome position: 68.43

GC content: 63.48

Gene sequence:

>564_bases
ATGACGGTCGATCCGCAGGCGATAGAACAAGAACGTCCTTATCTGCTGCGCTACGCGCTGGCCCAGCTGCGCGAGCGCGA
CGCCGCCGAGGAGGCAGTGCAGGAGACGCTGCTGGCGGCGCTGGAGGCGCGGGACGGTTTTTCCGGCAAGTCCACGCTGC
GCACCTGGCTGACGTCGATCTTGCGTTTCAAGTTGATCGACGCCTTGCGCCGCAAGGGCAAGGAGAAACTGTTCGAATCG
CTGGACGAGGAATGCGACGACGGCGATTTCGACGGCCTGTTCACGCAGGACGGCCATTGGCGGGAGCCGGTGCGCGCCTG
GAGCGGGCCGGAGTCGCAGCTGGTGTCCAAGCAGTTCTGGCAGGTGTTCGAGGAGTGCTCCAAGGTGATGCCGCGACGCA
CCGCGATGGTGTTCGCGATGCGCGAGGTGATGGGGATGGAGATCGCCGACATCTGTAACAATCTGGAGATCACCGCGACC
AACTGTTCTGTATTGCTGTACCGCGCGCGCATGAGCTTGCGCGAGTGTTTTTCGACGCGCTGGAGCCGGGAGGACGAGCG
ATGA

Upstream 100 bases:

>100_bases
CGTGCCCACCGCCAACAAGCCGCGGCAGGAAATCGAGGGCCTGAAGGTCTTGGCCGTGGACCGCCTGGATCAGGCGGTGG
AATACTGCAGGGAGTAGCGC

Downstream 100 bases:

>100_bases
GGTTGAGTTGCCGCGCGGCCAGCCGGCTGATTTCCGCCGGCCTGGACCGCCCTTTGAGCGCGATGGAGCATCTGAAGCTG
CGCATGCACCTTTTCCTGTG

Product: RNA polymerase sigma factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 187; Mature: 186

Protein sequence:

>187_residues
MTVDPQAIEQERPYLLRYALAQLRERDAAEEAVQETLLAALEARDGFSGKSTLRTWLTSILRFKLIDALRRKGKEKLFES
LDEECDDGDFDGLFTQDGHWREPVRAWSGPESQLVSKQFWQVFEECSKVMPRRTAMVFAMREVMGMEIADICNNLEITAT
NCSVLLYRARMSLRECFSTRWSREDER

Sequences:

>Translated_187_residues
MTVDPQAIEQERPYLLRYALAQLRERDAAEEAVQETLLAALEARDGFSGKSTLRTWLTSILRFKLIDALRRKGKEKLFES
LDEECDDGDFDGLFTQDGHWREPVRAWSGPESQLVSKQFWQVFEECSKVMPRRTAMVFAMREVMGMEIADICNNLEITAT
NCSVLLYRARMSLRECFSTRWSREDER
>Mature_186_residues
TVDPQAIEQERPYLLRYALAQLRERDAAEEAVQETLLAALEARDGFSGKSTLRTWLTSILRFKLIDALRRKGKEKLFESL
DEECDDGDFDGLFTQDGHWREPVRAWSGPESQLVSKQFWQVFEECSKVMPRRTAMVFAMREVMGMEIADICNNLEITATN
CSVLLYRARMSLRECFSTRWSREDER

Specific function: Unknown

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014289
- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 21785; Mature: 21654

Theoretical pI: Translated: 4.79; Mature: 4.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVDPQAIEQERPYLLRYALAQLRERDAAEEAVQETLLAALEARDGFSGKSTLRTWLTSI
CCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
LRFKLIDALRRKGKEKLFESLDEECDDGDFDGLFTQDGHWREPVRAWSGPESQLVSKQFW
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHH
QVFEECSKVMPRRTAMVFAMREVMGMEIADICNNLEITATNCSVLLYRARMSLRECFSTR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHHHHHH
WSREDER
CCCCCCC
>Mature Secondary Structure 
TVDPQAIEQERPYLLRYALAQLRERDAAEEAVQETLLAALEARDGFSGKSTLRTWLTSI
CCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
LRFKLIDALRRKGKEKLFESLDEECDDGDFDGLFTQDGHWREPVRAWSGPESQLVSKQFW
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHH
QVFEECSKVMPRRTAMVFAMREVMGMEIADICNNLEITATNCSVLLYRARMSLRECFSTR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHHHHHH
WSREDER
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]