| Definition | Chromobacterium violaceum ATCC 12472 chromosome, complete genome. |
|---|---|
| Accession | NC_005085 |
| Length | 4,751,080 |
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The map label for this gene is hmsH [H]
Identifier: 34498398
GI number: 34498398
Start: 3220113
End: 3222539
Strand: Reverse
Name: hmsH [H]
Synonym: CV_2943
Alternate gene names: 34498398
Gene position: 3222539-3220113 (Counterclockwise)
Preceding gene: 34498403
Following gene: 34498397
Centisome position: 67.83
GC content: 69.14
Gene sequence:
>2427_bases ATGTTGAAAAGTTTGTTCGTGCTGTCGTTGTGTTTCTTGCCGATGCTGGCGGTTGCGGACGCGCTGCCGCTGTGGCGGCA ACCTGGCTACGCGGAGGCTATCGTCAAGGCGCGCAACGGCGACACCGGGCCGGCCTTGCAGTTGCTGCAGCGCGAGGTGG CCGGCGGCAACCGCCAGAGCCAGGTGGTGGATGATTATCTGACTGTGCTGGCGTGGGCCGGCCGCGGCCGCGAAGCCGTG GATGAGGCGCGCAGGTTCTCCGATGTTCCGCTATCCGCGCCGACATTGCGGCTGTTGGCGAGCGCCGCCCGCGACCGGCA TGACTACGCGTCGGCGGTCGAGCTGTACCGGCGTTTGCCGGAGAAGCAGCGCGACGCGTCCTGGCTGGCGGCGCTGGCGA TGGCGCAGGCTGAGGCTGGCGCCGACAGCCAGGCATTGGCCACGCTGGACGCGGCGGACGGCAAGGGCGGCGCCGGCTCT GCGCTGGAGCGCGCCCGCGCCCGGGCCTATGTGCTGGCCGCCGGTCCAGAGTCCGCCCGCGCCCTCGCTTACGCGCAATC GGCTCTGGCGCGTTTTCCCGATGATCCGGATCTGGCGCGCACCTATGTTGGCCTGCTGTTGCGCCTGCATGCGCCGTTCG AGGCCGCGGCGGCGATGACGCGCTACCGCTTGAAGGATCCCGTCCTGCAGAGCAGGGCCGAACTGGACCAGGCCGCGATG CTCAGCCATTGGGGCGAGGCCCGTCAGCAGACCGCGACCGGCCTGGCGCGTTTCTCTCTGACCGACCGGGCCTTGAGCGA TAACCAGGCGGCCGGCGGCCAACTGCCTCCGCCCGCCGCCTGGATGAAGCGTGGCGCGCTGGACGACAGGCTGATCATGC TGCAGCAGCGCGGCCTCAGCGCCGACGCGGCGCGCGAATACGAAGCCGCGCCGCTGGGCGCCGGACTTTACGCCAAGGCC GCGGTGGCCGATGCCTACCTGGCTTTGCGCCGTCCGGAGCGGGCCTTGCCGCTGTACCGCGAGCTTGCCGCGGCCAGCCC CGATCCGAACCAGCATGTGGAATGGCATATCGGGCTGGTGTATGCGCTGTTCGAGTCGGGACGGATCGCCGAGTCGCGGC GAGAGCTGGACACCCTGCTGATGTCGGTGCCGCCGTATGTCTTCAGTTATGGACGCAAGGCCAGCAATCCGGATTACCGC GAGCTGGCGCAGCTGGATGCGATGATGGATTCCTATTCCGACCGCACCCGCGAGGCCTGGCAGAAACTGGATGCCTTGCT GGAGCAGGCGCCGCACAACGCCAGCTTGCGGGGCGGACAAGCCGAAGTGGCGCTGGCGCGAGGATGGCCGAGGATGGCGG CCGGCATCTACGATAGGCTGCGCGCGGACGATCCGGACAATTACAGCGCCTACGCCGGCCTGGCCCAGTCGGCGATGGAT CTGAAGGAACTGGACGAGGCCAAGCGTCAGATCGATTATCTGCGGCAGGCTCAGCCCGAGTGGGCGACGCTGGATCGGCT GGAGCGTCGTTGGTATTGGGAACGGCGGCCTGAGCTGACGGTGGAGGCGGGCAAGGATCTGCCCGGCGGCGGCGGAGCGG GCGTCGACGAACTCGGCGGCTGGGACGAGCATGCCCGGCTGTACTCGTCGCCATGGGGGCACTGGCGGCTGTTCGCGCTG CACGACTACGCCACCGCCAATTACCGCGATATCGGCCGGGTCAGCCGGCAGGACGGGGGCGTCGGCATCCAGTACCGCTC GGCCTTCGGCACCGCGGAGGCGGGCCTGACCGCGCAACTGGGCGGCGCGCGCGGCGGCGGCGCTTTCGCCGGCTTCGGCT GGACGCCGGATGACTACTGGACGCTGGGCGCGCATGCGGAGATCAACACGCCGGACGCGCCGCTGAAGGGCCGGTTTGAC GGCGTGCGCGGCAACGCCGTCCAGCTGAGCGCAACTTACCGCGTCAGCGACTACCGCAGCTTCGGCGGCCAGGCATCATA TACCAGCCTCAGCGACGGCAACCGGCGCGGCGGGCTCGGCGCCAACTGGCAGGAGCGCTGGCACAGCGGCCCGGTGTACA AGCTGGACACCATTCTCGCGCTGAGCGCCGGCCGCAACAGCGACACGCCTTCCGCGATCTACTACAACCCGCGCAGCGAT TTCGAGGCCGATCTGACCGTGGCGCAGGAATGGCGGCTGTGGGGGCGCTACGACGACAGCCTGCACCAGCGGCTGGGGCT GACCGTCGGCCAGTACCGGCAGCAGGGCTTCGGCACCGGCGCGGTGTGGGGCTTCTACGTCGAGCAGGAATGGCGCTGGT CGCCCCGCGGCGGCCTGACTTACGGCTTCGCCAGAAACCGTCATCCTTATGACGGCGCGGCGGATATCGGCAACCGCATC TACGTGCGACTTGAATGGCGGTTCTGA
Upstream 100 bases:
>100_bases TGTATTATCAATTGGATGGATGCCGTGCGGGTGAGCCCAATGCGTTGGCTTAGCATCGCAGCGCTTTTCCTGCGGCTGGC ATCGACGGAGAGGTGCGATC
Downstream 100 bases:
>100_bases CATGAGCGGATTCAGGATGGTTTGGCTGTTGCTGGCGCTTGGGTGCGGCTGGATAGGGCAGGCGCAGGCACAGGGGCTGC TGATTCTCTGTTATCACGAG
Product: hemin-binding outer membrane transmembrane protein
Products: NA
Alternate protein names: PGA export protein; Poly-beta-1,6-GlcNAc export protein [H]
Number of amino acids: Translated: 808; Mature: 808
Protein sequence:
>808_residues MLKSLFVLSLCFLPMLAVADALPLWRQPGYAEAIVKARNGDTGPALQLLQREVAGGNRQSQVVDDYLTVLAWAGRGREAV DEARRFSDVPLSAPTLRLLASAARDRHDYASAVELYRRLPEKQRDASWLAALAMAQAEAGADSQALATLDAADGKGGAGS ALERARARAYVLAAGPESARALAYAQSALARFPDDPDLARTYVGLLLRLHAPFEAAAAMTRYRLKDPVLQSRAELDQAAM LSHWGEARQQTATGLARFSLTDRALSDNQAAGGQLPPPAAWMKRGALDDRLIMLQQRGLSADAAREYEAAPLGAGLYAKA AVADAYLALRRPERALPLYRELAAASPDPNQHVEWHIGLVYALFESGRIAESRRELDTLLMSVPPYVFSYGRKASNPDYR ELAQLDAMMDSYSDRTREAWQKLDALLEQAPHNASLRGGQAEVALARGWPRMAAGIYDRLRADDPDNYSAYAGLAQSAMD LKELDEAKRQIDYLRQAQPEWATLDRLERRWYWERRPELTVEAGKDLPGGGGAGVDELGGWDEHARLYSSPWGHWRLFAL HDYATANYRDIGRVSRQDGGVGIQYRSAFGTAEAGLTAQLGGARGGGAFAGFGWTPDDYWTLGAHAEINTPDAPLKGRFD GVRGNAVQLSATYRVSDYRSFGGQASYTSLSDGNRRGGLGANWQERWHSGPVYKLDTILALSAGRNSDTPSAIYYNPRSD FEADLTVAQEWRLWGRYDDSLHQRLGLTVGQYRQQGFGTGAVWGFYVEQEWRWSPRGGLTYGFARNRHPYDGAADIGNRI YVRLEWRF
Sequences:
>Translated_808_residues MLKSLFVLSLCFLPMLAVADALPLWRQPGYAEAIVKARNGDTGPALQLLQREVAGGNRQSQVVDDYLTVLAWAGRGREAV DEARRFSDVPLSAPTLRLLASAARDRHDYASAVELYRRLPEKQRDASWLAALAMAQAEAGADSQALATLDAADGKGGAGS ALERARARAYVLAAGPESARALAYAQSALARFPDDPDLARTYVGLLLRLHAPFEAAAAMTRYRLKDPVLQSRAELDQAAM LSHWGEARQQTATGLARFSLTDRALSDNQAAGGQLPPPAAWMKRGALDDRLIMLQQRGLSADAAREYEAAPLGAGLYAKA AVADAYLALRRPERALPLYRELAAASPDPNQHVEWHIGLVYALFESGRIAESRRELDTLLMSVPPYVFSYGRKASNPDYR ELAQLDAMMDSYSDRTREAWQKLDALLEQAPHNASLRGGQAEVALARGWPRMAAGIYDRLRADDPDNYSAYAGLAQSAMD LKELDEAKRQIDYLRQAQPEWATLDRLERRWYWERRPELTVEAGKDLPGGGGAGVDELGGWDEHARLYSSPWGHWRLFAL HDYATANYRDIGRVSRQDGGVGIQYRSAFGTAEAGLTAQLGGARGGGAFAGFGWTPDDYWTLGAHAEINTPDAPLKGRFD GVRGNAVQLSATYRVSDYRSFGGQASYTSLSDGNRRGGLGANWQERWHSGPVYKLDTILALSAGRNSDTPSAIYYNPRSD FEADLTVAQEWRLWGRYDDSLHQRLGLTVGQYRQQGFGTGAVWGFYVEQEWRWSPRGGLTYGFARNRHPYDGAADIGNRI YVRLEWRF >Mature_808_residues MLKSLFVLSLCFLPMLAVADALPLWRQPGYAEAIVKARNGDTGPALQLLQREVAGGNRQSQVVDDYLTVLAWAGRGREAV DEARRFSDVPLSAPTLRLLASAARDRHDYASAVELYRRLPEKQRDASWLAALAMAQAEAGADSQALATLDAADGKGGAGS ALERARARAYVLAAGPESARALAYAQSALARFPDDPDLARTYVGLLLRLHAPFEAAAAMTRYRLKDPVLQSRAELDQAAM LSHWGEARQQTATGLARFSLTDRALSDNQAAGGQLPPPAAWMKRGALDDRLIMLQQRGLSADAAREYEAAPLGAGLYAKA AVADAYLALRRPERALPLYRELAAASPDPNQHVEWHIGLVYALFESGRIAESRRELDTLLMSVPPYVFSYGRKASNPDYR ELAQLDAMMDSYSDRTREAWQKLDALLEQAPHNASLRGGQAEVALARGWPRMAAGIYDRLRADDPDNYSAYAGLAQSAMD LKELDEAKRQIDYLRQAQPEWATLDRLERRWYWERRPELTVEAGKDLPGGGGAGVDELGGWDEHARLYSSPWGHWRLFAL HDYATANYRDIGRVSRQDGGVGIQYRSAFGTAEAGLTAQLGGARGGGAFAGFGWTPDDYWTLGAHAEINTPDAPLKGRFD GVRGNAVQLSATYRVSDYRSFGGQASYTSLSDGNRRGGLGANWQERWHSGPVYKLDTILALSAGRNSDTPSAIYYNPRSD FEADLTVAQEWRLWGRYDDSLHQRLGLTVGQYRQQGFGTGAVWGFYVEQEWRWSPRGGLTYGFARNRHPYDGAADIGNRI YVRLEWRF
Specific function: Exports the biofilm adhesin polysaccharide poly-beta- 1,6-N-acetyl-D-glucosamine (PGA) across the outer membrane. The PGA transported seems to be partially N-deacetylated since N- deacetylation of PGA by PgaB is needed for PGA export through the PgaA pori
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 3 TPR repeats [H]
Homologues:
Organism=Escherichia coli, GI1787261, Length=803, Percent_Identity=24.4084682440847, Blast_Score=133, Evalue=6e-32,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013026 - InterPro: IPR011990 - InterPro: IPR019734 [H]
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 89157; Mature: 89157
Theoretical pI: Translated: 6.86; Mature: 6.86
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLKSLFVLSLCFLPMLAVADALPLWRQPGYAEAIVKARNGDTGPALQLLQREVAGGNRQS CCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHH QVVDDYLTVLAWAGRGREAVDEARRFSDVPLSAPTLRLLASAARDRHDYASAVELYRRLP HHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC EKQRDASWLAALAMAQAEAGADSQALATLDAADGKGGAGSALERARARAYVLAAGPESAR HHHHHHHHHHHHHHHHHHCCCCCHHEEEEECCCCCCCCCHHHHHHHHCEEEEECCCCHHH ALAYAQSALARFPDDPDLARTYVGLLLRLHAPFEAAAAMTRYRLKDPVLQSRAELDQAAM HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH LSHWGEARQQTATGLARFSLTDRALSDNQAAGGQLPPPAAWMKRGALDDRLIMLQQRGLS HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHCCCC ADAAREYEAAPLGAGLYAKAAVADAYLALRRPERALPLYRELAAASPDPNQHVEWHIGLV CHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCEEEHHHHH YALFESGRIAESRRELDTLLMSVPPYVFSYGRKASNPDYRELAQLDAMMDSYSDRTREAW HHHHHCCCHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH QKLDALLEQAPHNASLRGGQAEVALARGWPRMAAGIYDRLRADDPDNYSAYAGLAQSAMD HHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH LKELDEAKRQIDYLRQAQPEWATLDRLERRWYWERRPELTVEAGKDLPGGGGAGVDELGG HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHCCC WDEHARLYSSPWGHWRLFALHDYATANYRDIGRVSRQDGGVGIQYRSAFGTAEAGLTAQL CHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHCCCCCEEEEECCCCCCCCCCCEEEC GGARGGGAFAGFGWTPDDYWTLGAHAEINTPDAPLKGRFDGVRGNAVQLSATYRVSDYRS CCCCCCCCCCCCCCCCCCCEEECCCEECCCCCCCCCCCCCCCCCCEEEEEEEEEEHHHHH FGGQASYTSLSDGNRRGGLGANWQERWHSGPVYKLDTILALSAGRNSDTPSAIYYNPRSD CCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCEEHHHEEEEECCCCCCCCCEEEECCCCC FEADLTVAQEWRLWGRYDDSLHQRLGLTVGQYRQQGFGTGAVWGFYVEQEWRWSPRGGLT CCCCHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHCCCCCCEEEEEEECCCCCCCCCCEE YGFARNRHPYDGAADIGNRIYVRLEWRF ECCCCCCCCCCCHHCCCCEEEEEEEECC >Mature Secondary Structure MLKSLFVLSLCFLPMLAVADALPLWRQPGYAEAIVKARNGDTGPALQLLQREVAGGNRQS CCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHH QVVDDYLTVLAWAGRGREAVDEARRFSDVPLSAPTLRLLASAARDRHDYASAVELYRRLP HHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC EKQRDASWLAALAMAQAEAGADSQALATLDAADGKGGAGSALERARARAYVLAAGPESAR HHHHHHHHHHHHHHHHHHCCCCCHHEEEEECCCCCCCCCHHHHHHHHCEEEEECCCCHHH ALAYAQSALARFPDDPDLARTYVGLLLRLHAPFEAAAAMTRYRLKDPVLQSRAELDQAAM HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH LSHWGEARQQTATGLARFSLTDRALSDNQAAGGQLPPPAAWMKRGALDDRLIMLQQRGLS HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHCCCC ADAAREYEAAPLGAGLYAKAAVADAYLALRRPERALPLYRELAAASPDPNQHVEWHIGLV CHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCEEEHHHHH YALFESGRIAESRRELDTLLMSVPPYVFSYGRKASNPDYRELAQLDAMMDSYSDRTREAW HHHHHCCCHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH QKLDALLEQAPHNASLRGGQAEVALARGWPRMAAGIYDRLRADDPDNYSAYAGLAQSAMD HHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH LKELDEAKRQIDYLRQAQPEWATLDRLERRWYWERRPELTVEAGKDLPGGGGAGVDELGG HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHCCC WDEHARLYSSPWGHWRLFALHDYATANYRDIGRVSRQDGGVGIQYRSAFGTAEAGLTAQL CHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHCCCCCEEEEECCCCCCCCCCCEEEC GGARGGGAFAGFGWTPDDYWTLGAHAEINTPDAPLKGRFDGVRGNAVQLSATYRVSDYRS CCCCCCCCCCCCCCCCCCCEEECCCEECCCCCCCCCCCCCCCCCCEEEEEEEEEEHHHHH FGGQASYTSLSDGNRRGGLGANWQERWHSGPVYKLDTILALSAGRNSDTPSAIYYNPRSD CCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCEEHHHEEEEECCCCCCCCCEEEECCCCC FEADLTVAQEWRLWGRYDDSLHQRLGLTVGQYRQQGFGTGAVWGFYVEQEWRWSPRGGLT CCCCHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHCCCCCCEEEEEEECCCCCCCCCCEE YGFARNRHPYDGAADIGNRIYVRLEWRF ECCCCCCCCCCCHHCCCCEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]