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The map label for this gene is hmsF [H]

Identifier: 34498397

GI number: 34498397

Start: 3218378

End: 3220096

Strand: Reverse

Name: hmsF [H]

Synonym: CV_2942

Alternate gene names: 34498397

Gene position: 3220096-3218378 (Counterclockwise)

Preceding gene: 34498398

Following gene: 34498396

Centisome position: 67.78

GC content: 68.47

Gene sequence:

>1719_bases
ATGGTTTGGCTGTTGCTGGCGCTTGGGTGCGGCTGGATAGGGCAGGCGCAGGCACAGGGGCTGCTGATTCTCTGTTATCA
CGAGATTTCGCAGGCCCAGGCGCGGCAGGATGATGAAAGCGTCGATGTGGATGCCTTGGCCCGGCAGCTGGAATGGTTGC
GCGGCGCGGGATTCCGCTTCGTCAGCCTCGACGACGCGATGGCGGCCAGGGCCGGCGGACCGGCTTTGCCGGACAAGTCG
GTCTTGCTGAGTTTCGACGACGGCTACCGCAGCGTCTATACCCAGGTCTACCCGGTGCTCAAGGCTTTCCGCGCGCCGGC
CTTGATCGGTCTGGTTGGCAGCTGGCTGTCCCCGCCCGAGGGCGGCAGCGTCAACTTCGCCGGCGTGAAGGTTCCGCGCG
ATGATTTCCTCTCCTGGGGGCAGATTCGCGAGATGCAGGCCAGCGGCCTGGTGGAGGTGGCCAACCATACATTCGATCTT
CATTACGGCATCCAGGCCAATCCTCAGGGCAATCTGCTGCCGGCCGCCTCGTCGGCGCGCTACGACCCGGCTAGCGGCAG
TTACGAGAGCCATGGCCAATTCCTGGCGCGGGTGGAGCGGGACCTGGCGCGGAACAGCGCGTTGCTGCGTCAAAAGCTGG
GACGCGCGCCGCGCGCCATGGTATGGCCCTATGACAGTTACACCCGGGAAGCGGGGGCCATCGCCGCCAAGCTCGGCATG
CCGGCGATGCTGACCTTGGACGACGGGGTCAATGGCCCCGACGTGCCCCTGTCCGCATTGCGGCGGGTGCTGGTGGGCGC
GGACATGAGCCTGGCGGATTTTGCCCGGCTGGTGCAGGCCAGCCAGCGCTGGCCGCAGGGCATCGCGCCCAGGCCCGAGC
GGGCGATGCCGCTGTCGCTCGACGACATCTACGACCCGGATCCGGCGAAGCAGGAAGAGAAGCTGGGCAAGGCGCTGGAT
CGCGTGAAGGAGATGGGGGCGAGCATAGTCTATCTGAAGGCATTCCACGATCAGGACGGCGATGGCGTCGCGCGCCAGCT
GTACTTTCCCAACAGCCATCTGCCGATGCGCGCCGACCTGTTTAACCGGGCCGCATGGCAGCTGGACAGCCGCGTGGGCG
TGGAGGTTTATGCCTGGCTGCCGGTGGATGGGTTGCGGCTGCCGCCTCCCGCTCTATTCGACGTTTATCGGGAGCTCGGC
CGCGCAGGCCGCTTCCGCGGCTTGCTGTTCCGAGGCGAGGGGCTGCCACCGGCCGGCGCGCCGGCAATGGGCGGCCGGGA
CGCGCTTCAGCTGCGGCTGGCCGAGGCGGTCCGCGAATCCAACCCCAGGCTGAAGGCGGCCAGCGGGCTGGACGGCGACG
CCTTGCTGAGCGGCGCCGCGGATGATGACTGGCGCAGAATGCTGGCCGAATACGACCGAGTGGAGGTGTCGGCGGCGCCG
CGGCAGGCTGCGGGGGGCAATGCGGACGACTGGCTGCGCCGTTTGCAGCGCAAGGTGGCCGAGACGCCGGGCGCGCTGGA
GAAGACGGTTTTCGAGTTGCCCAGCGTCGACCCGCGCAGCGGCAAGCCGGTGCCGGCGGAGACGCTGGCCGGCTGGATGC
GCGAGCTGAATGGCTGGGGCGTGCGCCAGATGGCGTATTACCCGGGCCTGCCGGACAGCGACGCCGCCGGATGGCGGACG
CTGAGGCGGGCGTTTTCCCTGGCCGAGACGCCGCGATGA

Upstream 100 bases:

>100_bases
GGCTTCGCCAGAAACCGTCATCCTTATGACGGCGCGGCGGATATCGGCAACCGCATCTACGTGCGACTTGAATGGCGGTT
CTGACATGAGCGGATTCAGG

Downstream 100 bases:

>100_bases
CGCGGGCGGCTTGCGGCAACGATGCGTCGGAGGAGCGGCGATGAACCACTACGTTCTGGATTTCGCCTTTTATTACCCGC
TGTTCATGTCCTATCTGTGG

Product: hemin storage signal peptide protein

Products: NA

Alternate protein names: PGA N-deacetylase; Poly-beta-1,6-GlcNAc N-deacetylase [H]

Number of amino acids: Translated: 572; Mature: 572

Protein sequence:

>572_residues
MVWLLLALGCGWIGQAQAQGLLILCYHEISQAQARQDDESVDVDALARQLEWLRGAGFRFVSLDDAMAARAGGPALPDKS
VLLSFDDGYRSVYTQVYPVLKAFRAPALIGLVGSWLSPPEGGSVNFAGVKVPRDDFLSWGQIREMQASGLVEVANHTFDL
HYGIQANPQGNLLPAASSARYDPASGSYESHGQFLARVERDLARNSALLRQKLGRAPRAMVWPYDSYTREAGAIAAKLGM
PAMLTLDDGVNGPDVPLSALRRVLVGADMSLADFARLVQASQRWPQGIAPRPERAMPLSLDDIYDPDPAKQEEKLGKALD
RVKEMGASIVYLKAFHDQDGDGVARQLYFPNSHLPMRADLFNRAAWQLDSRVGVEVYAWLPVDGLRLPPPALFDVYRELG
RAGRFRGLLFRGEGLPPAGAPAMGGRDALQLRLAEAVRESNPRLKAASGLDGDALLSGAADDDWRRMLAEYDRVEVSAAP
RQAAGGNADDWLRRLQRKVAETPGALEKTVFELPSVDPRSGKPVPAETLAGWMRELNGWGVRQMAYYPGLPDSDAAGWRT
LRRAFSLAETPR

Sequences:

>Translated_572_residues
MVWLLLALGCGWIGQAQAQGLLILCYHEISQAQARQDDESVDVDALARQLEWLRGAGFRFVSLDDAMAARAGGPALPDKS
VLLSFDDGYRSVYTQVYPVLKAFRAPALIGLVGSWLSPPEGGSVNFAGVKVPRDDFLSWGQIREMQASGLVEVANHTFDL
HYGIQANPQGNLLPAASSARYDPASGSYESHGQFLARVERDLARNSALLRQKLGRAPRAMVWPYDSYTREAGAIAAKLGM
PAMLTLDDGVNGPDVPLSALRRVLVGADMSLADFARLVQASQRWPQGIAPRPERAMPLSLDDIYDPDPAKQEEKLGKALD
RVKEMGASIVYLKAFHDQDGDGVARQLYFPNSHLPMRADLFNRAAWQLDSRVGVEVYAWLPVDGLRLPPPALFDVYRELG
RAGRFRGLLFRGEGLPPAGAPAMGGRDALQLRLAEAVRESNPRLKAASGLDGDALLSGAADDDWRRMLAEYDRVEVSAAP
RQAAGGNADDWLRRLQRKVAETPGALEKTVFELPSVDPRSGKPVPAETLAGWMRELNGWGVRQMAYYPGLPDSDAAGWRT
LRRAFSLAETPR
>Mature_572_residues
MVWLLLALGCGWIGQAQAQGLLILCYHEISQAQARQDDESVDVDALARQLEWLRGAGFRFVSLDDAMAARAGGPALPDKS
VLLSFDDGYRSVYTQVYPVLKAFRAPALIGLVGSWLSPPEGGSVNFAGVKVPRDDFLSWGQIREMQASGLVEVANHTFDL
HYGIQANPQGNLLPAASSARYDPASGSYESHGQFLARVERDLARNSALLRQKLGRAPRAMVWPYDSYTREAGAIAAKLGM
PAMLTLDDGVNGPDVPLSALRRVLVGADMSLADFARLVQASQRWPQGIAPRPERAMPLSLDDIYDPDPAKQEEKLGKALD
RVKEMGASIVYLKAFHDQDGDGVARQLYFPNSHLPMRADLFNRAAWQLDSRVGVEVYAWLPVDGLRLPPPALFDVYRELG
RAGRFRGLLFRGEGLPPAGAPAMGGRDALQLRLAEAVRESNPRLKAASGLDGDALLSGAADDDWRRMLAEYDRVEVSAAP
RQAAGGNADDWLRRLQRKVAETPGALEKTVFELPSVDPRSGKPVPAETLAGWMRELNGWGVRQMAYYPGLPDSDAAGWRT
LRRAFSLAETPR

Specific function: Catalyzes the N-deacetylation of poly-beta-1,6-N-acetyl- D-glucosamine (PGA), a biofilm adhesin polysaccharide. N- deacetylation promotes PGA export through the PgaA porin [H]

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor; Periplasmic side [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide deacetylase family [H]

Homologues:

Organism=Escherichia coli, GI1787260, Length=634, Percent_Identity=31.2302839116719, Blast_Score=294, Evalue=1e-80,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011330
- InterPro:   IPR002509 [H]

Pfam domain/function: PF01522 Polysacc_deac_1 [H]

EC number: NA

Molecular weight: Translated: 62520; Mature: 62520

Theoretical pI: Translated: 6.30; Mature: 6.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVWLLLALGCGWIGQAQAQGLLILCYHEISQAQARQDDESVDVDALARQLEWLRGAGFRF
CEEEEEECCCCCCCCCCCCCEEEEEEHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCEEE
VSLDDAMAARAGGPALPDKSVLLSFDDGYRSVYTQVYPVLKAFRAPALIGLVGSWLSPPE
EECCHHHHHCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCC
GGSVNFAGVKVPRDDFLSWGQIREMQASGLVEVANHTFDLHYGIQANPQGNLLPAASSAR
CCCEEEEEEECCHHHHHCHHHHHHHHHCCHHHHHCCEEEEEECEEECCCCCEECCCCCCC
YDPASGSYESHGQFLARVERDLARNSALLRQKLGRAPRAMVWPYDSYTREAGAIAAKLGM
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHHCCC
PAMLTLDDGVNGPDVPLSALRRVLVGADMSLADFARLVQASQRWPQGIAPRPERAMPLSL
CEEEEECCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCH
DDIYDPDPAKQEEKLGKALDRVKEMGASIVYLKAFHDQDGDGVARQLYFPNSHLPMRADL
HHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCEEEEECCCCCCCCHHHH
FNRAAWQLDSRVGVEVYAWLPVDGLRLPPPALFDVYRELGRAGRFRGLLFRGEGLPPAGA
HHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCC
PAMGGRDALQLRLAEAVRESNPRLKAASGLDGDALLSGAADDDWRRMLAEYDRVEVSAAP
CCCCCHHHHHHHHHHHHHHCCCCEEECCCCCHHHHCCCCCCHHHHHHHHHHHHEEECCCC
RQAAGGNADDWLRRLQRKVAETPGALEKTVFELPSVDPRSGKPVPAETLAGWMRELNGWG
CCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCC
VRQMAYYPGLPDSDAAGWRTLRRAFSLAETPR
CCCEEECCCCCCCCHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MVWLLLALGCGWIGQAQAQGLLILCYHEISQAQARQDDESVDVDALARQLEWLRGAGFRF
CEEEEEECCCCCCCCCCCCCEEEEEEHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCEEE
VSLDDAMAARAGGPALPDKSVLLSFDDGYRSVYTQVYPVLKAFRAPALIGLVGSWLSPPE
EECCHHHHHCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCC
GGSVNFAGVKVPRDDFLSWGQIREMQASGLVEVANHTFDLHYGIQANPQGNLLPAASSAR
CCCEEEEEEECCHHHHHCHHHHHHHHHCCHHHHHCCEEEEEECEEECCCCCEECCCCCCC
YDPASGSYESHGQFLARVERDLARNSALLRQKLGRAPRAMVWPYDSYTREAGAIAAKLGM
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHHCCC
PAMLTLDDGVNGPDVPLSALRRVLVGADMSLADFARLVQASQRWPQGIAPRPERAMPLSL
CEEEEECCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCH
DDIYDPDPAKQEEKLGKALDRVKEMGASIVYLKAFHDQDGDGVARQLYFPNSHLPMRADL
HHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCEEEEECCCCCCCCHHHH
FNRAAWQLDSRVGVEVYAWLPVDGLRLPPPALFDVYRELGRAGRFRGLLFRGEGLPPAGA
HHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCC
PAMGGRDALQLRLAEAVRESNPRLKAASGLDGDALLSGAADDDWRRMLAEYDRVEVSAAP
CCCCCHHHHHHHHHHHHHHCCCCEEECCCCCHHHHCCCCCCHHHHHHHHHHHHEEECCCC
RQAAGGNADDWLRRLQRKVAETPGALEKTVFELPSVDPRSGKPVPAETLAGWMRELNGWG
CCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCC
VRQMAYYPGLPDSDAAGWRTLRRAFSLAETPR
CCCEEECCCCCCCCHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]