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The map label for this gene is ybdK [C]

Identifier: 34498359

GI number: 34498359

Start: 3181142

End: 3182275

Strand: Direct

Name: ybdK [C]

Synonym: CV_2904

Alternate gene names: 34498359

Gene position: 3181142-3182275 (Clockwise)

Preceding gene: 34498358

Following gene: 34498360

Centisome position: 66.96

GC content: 64.99

Gene sequence:

>1134_bases
ATGCTTGAATTCAACCAAAGCCAGCCGCTCACCCTGGGCGTGGAGCTGGAACTGATGATACTGAACCGCCGCGACTACAA
CCTCACCCGCGGCTCCGACGACCTGCTGCTGCAGATCAACCGCAAGCCGCACGGCTATGACATCAAGCCCGAGATCACCC
AGGGCATGATAGAGATCGGCACCGCCGTCCACAGCGACGTCAACGCGATGCTGGACGAGCTGCTGGCCATCCGCACATTG
CTGGTGGACAGCGCGCACAAGCTGAACCTGGGCCTGGCGGGCGGCGGCGCCCACCCGTTCCAGCACTGGGAGGACCAGCG
CATCTATCCCAAGGAGCGCTACAAGCTGGTATCCGAGCTTTACGGCTATCTGGCCAAGCAATTCACCGTCTACGGCCAGC
ACATCCACATCGGCTGTCCGGACGGCGACGCGGCGGTGCGGCTTACCCACTACCTGGCCCGCTACATCCCGCACTTCATC
GCGCTGTCGGCGTCCTCGCCCTTCTACCAGGGTGTGGACACCTCGTTCCAGACCTCCCGCCTCACCAGCGTCAACGCCTT
CCCGCTGTCGGGCTGCATGCCGGTGGTGGACAGCTGGGACGCGTTCAACGCCTATTTCGAGCGCATGGAAGCGCTGGGCA
TCGTCGCCAGCATGAAGGACTTTTACTGGGACATCCGCCCCAAGCCGGAATACGGCACCGTGGAGATCCGCATCTGCGAC
ACGCCGCTATCGGTCGAAACGCCGGTGCTGCTGGCCGCCTACGCCCAGATGCTGGCGCGACGCTGCTTCGAGGAAAGCTG
GAACGACATCTGCCCCGAGCCCTACCTCACCTACAGCTACAACCGCTTCCAGGCCTGCCGCTTCGGCTTCGACGGCGTGA
TGGTGGATGCCCGCAGCAAGAGCCAGCTGGGTCTGCAGGAAGACCTGCTGGACACGCTGCGCGCGCTGGAGCCGCACGCC
GAGGCGCTGGGCAGCCAGCACCAGCTGGCCGCGCTGCGACAGCGGGCGCTGAAATGCCACAGCGACAGCCGCTGGCTGCG
CCAGATATTCGAGCAGAGCGGCTCGCTGAGCGAGGTGGTGCGCCGCCAGAGCGAGCACTGGATGTACGCCGAGCCGGGAG
TCGGCGTAAACTGA

Upstream 100 bases:

>100_bases
AGCGCGGCGCTGATGGCCGCGCTGCTGATCAACGAGATCGCCGCCCCCATCCTCACCCGGCTAGCCCTGCGCCTGGCCGG
CGAAACCGCAGGAGCCAGCC

Downstream 100 bases:

>100_bases
GCGATTGCAATCGGATCGCCCCTTTATGCCTTTCGAACTCCCGCAACAACCGGCGCCGGAACTGCCCGAGCGCTGGTGCG
TATTCAACGGCAGCCTGCTG

Product: carboxylate-amine ligase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 377; Mature: 377

Protein sequence:

>377_residues
MLEFNQSQPLTLGVELELMILNRRDYNLTRGSDDLLLQINRKPHGYDIKPEITQGMIEIGTAVHSDVNAMLDELLAIRTL
LVDSAHKLNLGLAGGGAHPFQHWEDQRIYPKERYKLVSELYGYLAKQFTVYGQHIHIGCPDGDAAVRLTHYLARYIPHFI
ALSASSPFYQGVDTSFQTSRLTSVNAFPLSGCMPVVDSWDAFNAYFERMEALGIVASMKDFYWDIRPKPEYGTVEIRICD
TPLSVETPVLLAAYAQMLARRCFEESWNDICPEPYLTYSYNRFQACRFGFDGVMVDARSKSQLGLQEDLLDTLRALEPHA
EALGSQHQLAALRQRALKCHSDSRWLRQIFEQSGSLSEVVRRQSEHWMYAEPGVGVN

Sequences:

>Translated_377_residues
MLEFNQSQPLTLGVELELMILNRRDYNLTRGSDDLLLQINRKPHGYDIKPEITQGMIEIGTAVHSDVNAMLDELLAIRTL
LVDSAHKLNLGLAGGGAHPFQHWEDQRIYPKERYKLVSELYGYLAKQFTVYGQHIHIGCPDGDAAVRLTHYLARYIPHFI
ALSASSPFYQGVDTSFQTSRLTSVNAFPLSGCMPVVDSWDAFNAYFERMEALGIVASMKDFYWDIRPKPEYGTVEIRICD
TPLSVETPVLLAAYAQMLARRCFEESWNDICPEPYLTYSYNRFQACRFGFDGVMVDARSKSQLGLQEDLLDTLRALEPHA
EALGSQHQLAALRQRALKCHSDSRWLRQIFEQSGSLSEVVRRQSEHWMYAEPGVGVN
>Mature_377_residues
MLEFNQSQPLTLGVELELMILNRRDYNLTRGSDDLLLQINRKPHGYDIKPEITQGMIEIGTAVHSDVNAMLDELLAIRTL
LVDSAHKLNLGLAGGGAHPFQHWEDQRIYPKERYKLVSELYGYLAKQFTVYGQHIHIGCPDGDAAVRLTHYLARYIPHFI
ALSASSPFYQGVDTSFQTSRLTSVNAFPLSGCMPVVDSWDAFNAYFERMEALGIVASMKDFYWDIRPKPEYGTVEIRICD
TPLSVETPVLLAAYAQMLARRCFEESWNDICPEPYLTYSYNRFQACRFGFDGVMVDARSKSQLGLQEDLLDTLRALEPHA
EALGSQHQLAALRQRALKCHSDSRWLRQIFEQSGSLSEVVRRQSEHWMYAEPGVGVN

Specific function: ATP-dependent carboxylate-amine ligase

COG id: COG2170

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the carboxylate-amine ligase family

Homologues:

Organism=Escherichia coli, GI1786795, Length=370, Percent_Identity=38.6486486486486, Blast_Score=294, Evalue=8e-81,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CAAL_CHRVO (Q7NTZ9)

Other databases:

- EMBL:   AE016825
- RefSeq:   NP_902574.1
- ProteinModelPortal:   Q7NTZ9
- SMR:   Q7NTZ9
- GeneID:   2548618
- GenomeReviews:   AE016825_GR
- KEGG:   cvi:CV_2904
- NMPDR:   fig|243365.1.peg.2904
- HOGENOM:   HBG564677
- OMA:   NWQEFAG
- PhylomeDB:   Q7NTZ9
- ProtClustDB:   PRK13516
- BioCyc:   CVIO243365:CV_2904-MONOMER
- HAMAP:   MF_01609
- InterPro:   IPR011793
- InterPro:   IPR006336
- TIGRFAMs:   TIGR02050

Pfam domain/function: PF04107 GCS2

EC number: NA

Molecular weight: Translated: 42860; Mature: 42860

Theoretical pI: Translated: 5.90; Mature: 5.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLEFNQSQPLTLGVELELMILNRRDYNLTRGSDDLLLQINRKPHGYDIKPEITQGMIEIG
CCCCCCCCCEEEEEEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHH
TAVHSDVNAMLDELLAIRTLLVDSAHKLNLGLAGGGAHPFQHWEDQRIYPKERYKLVSEL
HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHH
YGYLAKQFTVYGQHIHIGCPDGDAAVRLTHYLARYIPHFIALSASSPFYQGVDTSFQTSR
HHHHHHHHEEECCEEEEECCCCHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCHHHH
LTSVNAFPLSGCMPVVDSWDAFNAYFERMEALGIVASMKDFYWDIRPKPEYGTVEIRICD
CCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEC
TPLSVETPVLLAAYAQMLARRCFEESWNDICPEPYLTYSYNRFQACRFGFDGVMVDARSK
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCHHHHHHCCCCCEEEECCCC
SQLGLQEDLLDTLRALEPHAEALGSQHQLAALRQRALKCHSDSRWLRQIFEQSGSLSEVV
CCCCHHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHH
RRQSEHWMYAEPGVGVN
HHHHCCEEEECCCCCCC
>Mature Secondary Structure
MLEFNQSQPLTLGVELELMILNRRDYNLTRGSDDLLLQINRKPHGYDIKPEITQGMIEIG
CCCCCCCCCEEEEEEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHH
TAVHSDVNAMLDELLAIRTLLVDSAHKLNLGLAGGGAHPFQHWEDQRIYPKERYKLVSEL
HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHH
YGYLAKQFTVYGQHIHIGCPDGDAAVRLTHYLARYIPHFIALSASSPFYQGVDTSFQTSR
HHHHHHHHEEECCEEEEECCCCHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCHHHH
LTSVNAFPLSGCMPVVDSWDAFNAYFERMEALGIVASMKDFYWDIRPKPEYGTVEIRICD
CCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEC
TPLSVETPVLLAAYAQMLARRCFEESWNDICPEPYLTYSYNRFQACRFGFDGVMVDARSK
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCHHHHHHCCCCCEEEECCCC
SQLGLQEDLLDTLRALEPHAEALGSQHQLAALRQRALKCHSDSRWLRQIFEQSGSLSEVV
CCCCHHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHH
RRQSEHWMYAEPGVGVN
HHHHCCEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 14500782