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The map label for this gene is rtn [H]

Identifier: 34498346

GI number: 34498346

Start: 3166604

End: 3167650

Strand: Reverse

Name: rtn [H]

Synonym: CV_2891

Alternate gene names: 34498346

Gene position: 3167650-3166604 (Counterclockwise)

Preceding gene: 34498348

Following gene: 34498345

Centisome position: 66.67

GC content: 67.91

Gene sequence:

>1047_bases
ATGCGGTTGGGGCGGAAGCTGGGTGTATGGCTGTCGCGGCGGGCGGTTGGCGCCGGCGCGGCGCCGGTGTATGCGCTGGC
GGTGGCGGCGTGCGCGCTGCCTGCGCTGTTTCTGCTCTGGCGTCTGGGGGCTGCGAGCTTTGATCCGCCGGACTGGCGCG
GCTGGGCGATAGCGTCGGAGATCGGCCTGTTGGCGGCGCTGGTCGGGGCGATGCTCGCCGGCTGGCTGCGGCGGGGAGCG
GGGCTGCGCGGCGCGGGCGGTTGGGAGATTTCGGAGGGGATGCGCAGCCAGGCGTTCTTCGCGCATTACCAGCCGATTGT
CACCGGCACCCGCGGCGAGTGCGTCGGCGTGGAAGTGCTGGCGCGCTGGCGCCATCCGGTTCGGGGCAATGTGCGGGCCG
ACCTGTTCATACCGGAGGCGGTCGAGGCGGGCTTGATCGTGCCGCTGACGCGCTATCTGCTCAAGCGGGTGTGCGACGAG
TTGCGCAAGGTGGCGCTGCCGCCGGATTTCATGGTGGGCGTCAACATCGCCGGCGAGCATCTGGCCTTGCCGGAACTGGT
GCAGGACTGCCGCGAGATGGTGGACATGCTGCGCGCCAAGCAGGCGACGCTGGTGCTGGAAATTTCCGAGCAGGTGCCGC
TGAGCGAGGCGTCCGGCGCGTTAGGCGTGATCAGGCGGCTGAAGCGCGAGGGCGTGAAGCTGGCGCTGGACGATTTCGGT
TCCGGTTACGCCGACGTGGCGTATCTGCGGCGTTGGGGCTTCGATTATCTGAAGGTGGAGAAAGGCCTTGTCTCGACGCT
GGAATGGGACGCGCTGCGCGGCGGCGGGCGGGATGGCGTGTTGTCGTCCGGCGAGCCGGGCGTGAGGGTGATCGTCAAGG
GCGTGGAGACTTCGGGGCAGCAGAGCGATCTGAGCGGGAAAGGCTTCGAGCTGCTGCAGGGCTTTTATTTCGGCAAGCCG
ATGACGCTGAATCACTTCAGGCAATGGCTGTATTCCGGGATCATTCAGGATCGATCGACGGCCGGGGTGCGTCCGCGGGA
CAGCTAG

Upstream 100 bases:

>100_bases
GAAAATTAGCTTGCGAACCACAAGCAAGGGGCGCCGGGGCTGGCGAAGCGGCCGCGGCTCGCTACACTGCCACTATGGGC
GCGGGGCAGGGGGCGGGCGA

Downstream 100 bases:

>100_bases
GGGCTGTTGACGTTTGCTGAGCGGCCGCGCCGGGATGCGTTTTGCGGCGAATCCAGGCGTTTCGCGCGCCGCATAGTCAT
GCTCTGCCAGCGCGGAACAA

Product: rtn like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 348; Mature: 348

Protein sequence:

>348_residues
MRLGRKLGVWLSRRAVGAGAAPVYALAVAACALPALFLLWRLGAASFDPPDWRGWAIASEIGLLAALVGAMLAGWLRRGA
GLRGAGGWEISEGMRSQAFFAHYQPIVTGTRGECVGVEVLARWRHPVRGNVRADLFIPEAVEAGLIVPLTRYLLKRVCDE
LRKVALPPDFMVGVNIAGEHLALPELVQDCREMVDMLRAKQATLVLEISEQVPLSEASGALGVIRRLKREGVKLALDDFG
SGYADVAYLRRWGFDYLKVEKGLVSTLEWDALRGGGRDGVLSSGEPGVRVIVKGVETSGQQSDLSGKGFELLQGFYFGKP
MTLNHFRQWLYSGIIQDRSTAGVRPRDS

Sequences:

>Translated_348_residues
MRLGRKLGVWLSRRAVGAGAAPVYALAVAACALPALFLLWRLGAASFDPPDWRGWAIASEIGLLAALVGAMLAGWLRRGA
GLRGAGGWEISEGMRSQAFFAHYQPIVTGTRGECVGVEVLARWRHPVRGNVRADLFIPEAVEAGLIVPLTRYLLKRVCDE
LRKVALPPDFMVGVNIAGEHLALPELVQDCREMVDMLRAKQATLVLEISEQVPLSEASGALGVIRRLKREGVKLALDDFG
SGYADVAYLRRWGFDYLKVEKGLVSTLEWDALRGGGRDGVLSSGEPGVRVIVKGVETSGQQSDLSGKGFELLQGFYFGKP
MTLNHFRQWLYSGIIQDRSTAGVRPRDS
>Mature_348_residues
MRLGRKLGVWLSRRAVGAGAAPVYALAVAACALPALFLLWRLGAASFDPPDWRGWAIASEIGLLAALVGAMLAGWLRRGA
GLRGAGGWEISEGMRSQAFFAHYQPIVTGTRGECVGVEVLARWRHPVRGNVRADLFIPEAVEAGLIVPLTRYLLKRVCDE
LRKVALPPDFMVGVNIAGEHLALPELVQDCREMVDMLRAKQATLVLEISEQVPLSEASGALGVIRRLKREGVKLALDDFG
SGYADVAYLRRWGFDYLKVEKGLVSTLEWDALRGGGRDGVLSSGEPGVRVIVKGVETSGQQSDLSGKGFELLQGFYFGKP
MTLNHFRQWLYSGIIQDRSTAGVRPRDS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm (Potential). Note=Found associated with the RNA degradosome [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 EAL domain [H]

Homologues:

Organism=Escherichia coli, GI87081845, Length=292, Percent_Identity=32.1917808219178, Blast_Score=154, Evalue=7e-39,
Organism=Escherichia coli, GI1788502, Length=254, Percent_Identity=35.0393700787402, Blast_Score=153, Evalue=2e-38,
Organism=Escherichia coli, GI1786507, Length=245, Percent_Identity=33.469387755102, Blast_Score=151, Evalue=8e-38,
Organism=Escherichia coli, GI87081980, Length=258, Percent_Identity=32.5581395348837, Blast_Score=145, Evalue=3e-36,
Organism=Escherichia coli, GI1787541, Length=246, Percent_Identity=29.6747967479675, Blast_Score=114, Evalue=1e-26,
Organism=Escherichia coli, GI87081743, Length=270, Percent_Identity=27.4074074074074, Blast_Score=111, Evalue=6e-26,
Organism=Escherichia coli, GI226510982, Length=258, Percent_Identity=28.6821705426357, Blast_Score=101, Evalue=8e-23,
Organism=Escherichia coli, GI1790496, Length=244, Percent_Identity=25.4098360655738, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI87081921, Length=252, Percent_Identity=25.3968253968254, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1787055, Length=255, Percent_Identity=27.0588235294118, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1788849, Length=253, Percent_Identity=22.9249011857708, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI87082096, Length=218, Percent_Identity=27.0642201834862, Blast_Score=71, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001633 [H]

Pfam domain/function: PF00563 EAL [H]

EC number: NA

Molecular weight: Translated: 37896; Mature: 37896

Theoretical pI: Translated: 9.56; Mature: 9.56

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50883 EAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLGRKLGVWLSRRAVGAGAAPVYALAVAACALPALFLLWRLGAASFDPPDWRGWAIASE
CCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHH
IGLLAALVGAMLAGWLRRGAGLRGAGGWEISEGMRSQAFFAHYQPIVTGTRGECVGVEVL
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHEECCCCCCHHHHHH
ARWRHPVRGNVRADLFIPEAVEAGLIVPLTRYLLKRVCDELRKVALPPDFMVGVNIAGEH
HHCCCCCCCCCEEEEECCHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCC
LALPELVQDCREMVDMLRAKQATLVLEISEQVPLSEASGALGVIRRLKREGVKLALDDFG
CCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCEEEEHHCC
SGYADVAYLRRWGFDYLKVEKGLVSTLEWDALRGGGRDGVLSSGEPGVRVIVKGVETSGQ
CCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCC
QSDLSGKGFELLQGFYFGKPMTLNHFRQWLYSGIIQDRSTAGVRPRDS
CCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MRLGRKLGVWLSRRAVGAGAAPVYALAVAACALPALFLLWRLGAASFDPPDWRGWAIASE
CCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHH
IGLLAALVGAMLAGWLRRGAGLRGAGGWEISEGMRSQAFFAHYQPIVTGTRGECVGVEVL
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHEECCCCCCHHHHHH
ARWRHPVRGNVRADLFIPEAVEAGLIVPLTRYLLKRVCDELRKVALPPDFMVGVNIAGEH
HHCCCCCCCCCEEEEECCHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCC
LALPELVQDCREMVDMLRAKQATLVLEISEQVPLSEASGALGVIRRLKREGVKLALDDFG
CCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCEEEEHHCC
SGYADVAYLRRWGFDYLKVEKGLVSTLEWDALRGGGRDGVLSSGEPGVRVIVKGVETSGQ
CCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCC
QSDLSGKGFELLQGFYFGKPMTLNHFRQWLYSGIIQDRSTAGVRPRDS
CCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]