| Definition | Chromobacterium violaceum ATCC 12472 chromosome, complete genome. |
|---|---|
| Accession | NC_005085 |
| Length | 4,751,080 |
Click here to switch to the map view.
The map label for this gene is ylaK [H]
Identifier: 34498271
GI number: 34498271
Start: 3066419
End: 3067822
Strand: Direct
Name: ylaK [H]
Synonym: CV_2816
Alternate gene names: 34498271
Gene position: 3066419-3067822 (Clockwise)
Preceding gene: 34498270
Following gene: 34498282
Centisome position: 64.54
GC content: 63.25
Gene sequence:
>1404_bases ATGGCCGGCCGCAAAAAGACCACCGCGTGCAAGCTGTTCGTACTGGACACCAACGTACTCTTGCACGACCCCACCTGTCT GTACCGCTTCGAAGAACACGATGTGTTCATCCCCATCATCACGCTGGAAGAGCTGGACACCCACAAGAAGGGCATGTCCG AAGTGGCGCGCAACGCCCGCCAGGCCAGCCGCTTCCTGGACGACATCATCAGCGGCAACGAGCTGAACATCTCCGAGGGC ATCCCCCTCAAGCACGCCAGCCGCGACGCCGCCAGCGGCAAGCTGATCCTGCAGACCCAGGCCATCAACGGCACCCTGCC CTCGTCGCTGCCCATGGGCAAGGCCGACAACCAGATCCTCGGCATCGTGATGGCGCTGAAGAGCCACTACCAGGGCCGCG CCGTCATCCTGGTGTCCAAGGACATCAATATGCGCATCAAGGCCCGCGCGCTGGGCCTGGAGGCGGAAGACTACTTCAAC GACAAGGTGCTGGAAGACACCGACGTGCTGTACACCGGCACCCGCGAGATCGACCAGACTTTCTGGGAGCGCAACAGCAA GGACATCAAGTCCTGGCAGGACCACGGCCGCAGCTACTACCAGCTGTCCGGCTCGGACTGCGCCAACCTGTACGTGAACC AGCTGCTGTGGCAGGAAGGCGAAAAGCCTTTCCAGGCGCGGGTGATCAAGGTGGAAGGCAAGACCGCGGTGCTGGAGACG CTGAAGGACTACAGCCACAACAAGAACAACGTCTGGGGCATCACCGCGCGCAACCGCGAGCAGAACTTCGCGCTGAACAT GCTGATGGACCCCAATGTCGACTTCATCACCCTGTTGGGCCAGGCCGGCACCGGCAAGACGCTGCTGACGCTGGCGGCGG GGCTGGCGATGACGTTGGAGCAGAAGATCTACAGCGAGATCATCATGACCCGCGTCACCGTGCCTGTGGGCGAGGACATC GGCTTCCTGCCCGGCACCGAGGAGGAAAAGATGGCGCCGTGGATGGGCGCGCTGGAGGACAACCTTGACGTGCTGAACAA GAGCGACGACGACGGCGGCGATTGGGGCCGCGCCGCCACCCGCGACCTGATCCGCAGCCGCATCAAGGTGAAGAGCCTGA ACTTCATGCGCGGCCGCACCTTCCTCAACAAATACCTGATCATCGACGAGGCGCAGAACCTGACGCCCAAGCAGATGAAA ACGCTGATCACCCGCGCCGGCCCCGGCACCAAGGTGGTCTGCCTGGGCAACGTCAGCCAGATCGACACCCCCTATCTGAC CGAGGGCAGTTCCGGCCTGACCTACGTGGTGGACCGCTTCAAAGGCTGGGACCACTCCGCCCACATCACGCTGCAGCGCG GCGAGCGCTCGCGCCTGGCCGACTACGCCGGCGAAGTCTTGTAA
Upstream 100 bases:
>100_bases CACGCAGAGGAGGTGCTGGCGTACGTCAAGACGCTGAAGTAGCAAGCGATACCCGCCCGGCCAGCCGGCCGGGCCAGAAC ATGAACAAGGGGACCACATC
Downstream 100 bases:
>100_bases ACCTTGCGGCCCCGGCGCGCGGCCAGCCGTGCCCGGCATGAAAAACGGCGCCAGCCTCAGGCTTGGCGCCGTTTTCTCGG CGGCTACAAATCCTCCCGCT
Product: PhoH-like protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 467; Mature: 466
Protein sequence:
>467_residues MAGRKKTTACKLFVLDTNVLLHDPTCLYRFEEHDVFIPIITLEELDTHKKGMSEVARNARQASRFLDDIISGNELNISEG IPLKHASRDAASGKLILQTQAINGTLPSSLPMGKADNQILGIVMALKSHYQGRAVILVSKDINMRIKARALGLEAEDYFN DKVLEDTDVLYTGTREIDQTFWERNSKDIKSWQDHGRSYYQLSGSDCANLYVNQLLWQEGEKPFQARVIKVEGKTAVLET LKDYSHNKNNVWGITARNREQNFALNMLMDPNVDFITLLGQAGTGKTLLTLAAGLAMTLEQKIYSEIIMTRVTVPVGEDI GFLPGTEEEKMAPWMGALEDNLDVLNKSDDDGGDWGRAATRDLIRSRIKVKSLNFMRGRTFLNKYLIIDEAQNLTPKQMK TLITRAGPGTKVVCLGNVSQIDTPYLTEGSSGLTYVVDRFKGWDHSAHITLQRGERSRLADYAGEVL
Sequences:
>Translated_467_residues MAGRKKTTACKLFVLDTNVLLHDPTCLYRFEEHDVFIPIITLEELDTHKKGMSEVARNARQASRFLDDIISGNELNISEG IPLKHASRDAASGKLILQTQAINGTLPSSLPMGKADNQILGIVMALKSHYQGRAVILVSKDINMRIKARALGLEAEDYFN DKVLEDTDVLYTGTREIDQTFWERNSKDIKSWQDHGRSYYQLSGSDCANLYVNQLLWQEGEKPFQARVIKVEGKTAVLET LKDYSHNKNNVWGITARNREQNFALNMLMDPNVDFITLLGQAGTGKTLLTLAAGLAMTLEQKIYSEIIMTRVTVPVGEDI GFLPGTEEEKMAPWMGALEDNLDVLNKSDDDGGDWGRAATRDLIRSRIKVKSLNFMRGRTFLNKYLIIDEAQNLTPKQMK TLITRAGPGTKVVCLGNVSQIDTPYLTEGSSGLTYVVDRFKGWDHSAHITLQRGERSRLADYAGEVL >Mature_466_residues AGRKKTTACKLFVLDTNVLLHDPTCLYRFEEHDVFIPIITLEELDTHKKGMSEVARNARQASRFLDDIISGNELNISEGI PLKHASRDAASGKLILQTQAINGTLPSSLPMGKADNQILGIVMALKSHYQGRAVILVSKDINMRIKARALGLEAEDYFND KVLEDTDVLYTGTREIDQTFWERNSKDIKSWQDHGRSYYQLSGSDCANLYVNQLLWQEGEKPFQARVIKVEGKTAVLETL KDYSHNKNNVWGITARNREQNFALNMLMDPNVDFITLLGQAGTGKTLLTLAAGLAMTLEQKIYSEIIMTRVTVPVGEDIG FLPGTEEEKMAPWMGALEDNLDVLNKSDDDGGDWGRAATRDLIRSRIKVKSLNFMRGRTFLNKYLIIDEAQNLTPKQMKT LITRAGPGTKVVCLGNVSQIDTPYLTEGSSGLTYVVDRFKGWDHSAHITLQRGERSRLADYAGEVL
Specific function: Unknown
COG id: COG1875
COG function: function code T; Predicted ATPase related to phosphate starvation-inducible protein PhoH
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PINc domain [H]
Homologues:
Organism=Escherichia coli, GI1787257, Length=188, Percent_Identity=37.2340425531915, Blast_Score=102, Evalue=4e-23, Organism=Escherichia coli, GI145693103, Length=186, Percent_Identity=37.0967741935484, Blast_Score=95, Evalue=1e-20,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003714 - InterPro: IPR006596 [H]
Pfam domain/function: PF02562 PhoH [H]
EC number: NA
Molecular weight: Translated: 52261; Mature: 52130
Theoretical pI: Translated: 6.61; Mature: 6.61
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAGRKKTTACKLFVLDTNVLLHDPTCLYRFEEHDVFIPIITLEELDTHKKGMSEVARNAR CCCCCCCCEEEEEEEECCEEEECCCEEEEEECCCEEEEEEEHHHHHHHHHHHHHHHHHHH QASRFLDDIISGNELNISEGIPLKHASRDAASGKLILQTQAINGTLPSSLPMGKADNQIL HHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHH GIVMALKSHYQGRAVILVSKDINMRIKARALGLEAEDYFNDKVLEDTDVLYTGTREIDQT HHHHHHHHCCCCCEEEEEECCCCEEEEEEEECCCHHHHCCCCCCCCCCEEEECCHHHHHH FWERNSKDIKSWQDHGRSYYQLSGSDCANLYVNQLLWQEGEKPFQARVIKVEGKTAVLET HHHCCCHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHH LKDYSHNKNNVWGITARNREQNFALNMLMDPNVDFITLLGQAGTGKTLLTLAAGLAMTLE HHHHCCCCCCEEEEEECCCCCCEEEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHH QKIYSEIIMTRVTVPVGEDIGFLPGTEEEKMAPWMGALEDNLDVLNKSDDDGGDWGRAAT HHHHHHHHHHHEEECCCCCCCCCCCCCCHHCCHHHHHHHCCHHHHCCCCCCCCCHHHHHH RDLIRSRIKVKSLNFMRGRTFLNKYLIIDEAQNLTPKQMKTLITRAGPGTKVVCLGNVSQ HHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCHHHHHHHHHCCCCCCEEEEECCCCC IDTPYLTEGSSGLTYVVDRFKGWDHSAHITLQRGERSRLADYAGEVL CCCCCEECCCCCHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHCCCC >Mature Secondary Structure AGRKKTTACKLFVLDTNVLLHDPTCLYRFEEHDVFIPIITLEELDTHKKGMSEVARNAR CCCCCCCEEEEEEEECCEEEECCCEEEEEECCCEEEEEEEHHHHHHHHHHHHHHHHHHH QASRFLDDIISGNELNISEGIPLKHASRDAASGKLILQTQAINGTLPSSLPMGKADNQIL HHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHH GIVMALKSHYQGRAVILVSKDINMRIKARALGLEAEDYFNDKVLEDTDVLYTGTREIDQT HHHHHHHHCCCCCEEEEEECCCCEEEEEEEECCCHHHHCCCCCCCCCCEEEECCHHHHHH FWERNSKDIKSWQDHGRSYYQLSGSDCANLYVNQLLWQEGEKPFQARVIKVEGKTAVLET HHHCCCHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHH LKDYSHNKNNVWGITARNREQNFALNMLMDPNVDFITLLGQAGTGKTLLTLAAGLAMTLE HHHHCCCCCCEEEEEECCCCCCEEEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHH QKIYSEIIMTRVTVPVGEDIGFLPGTEEEKMAPWMGALEDNLDVLNKSDDDGGDWGRAAT HHHHHHHHHHHEEECCCCCCCCCCCCCCHHCCHHHHHHHCCHHHHCCCCCCCCCHHHHHH RDLIRSRIKVKSLNFMRGRTFLNKYLIIDEAQNLTPKQMKTLITRAGPGTKVVCLGNVSQ HHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCHHHHHHHHHCCCCCCEEEEECCCCC IDTPYLTEGSSGLTYVVDRFKGWDHSAHITLQRGERSRLADYAGEVL CCCCCEECCCCCHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]