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The map label for this gene is ssaJ [H]

Identifier: 34498043

GI number: 34498043

Start: 2788155

End: 2788880

Strand: Direct

Name: ssaJ [H]

Synonym: CV_2588

Alternate gene names: 34498043

Gene position: 2788155-2788880 (Clockwise)

Preceding gene: 34498042

Following gene: 34498044

Centisome position: 58.68

GC content: 58.4

Gene sequence:

>726_bases
ATGAAAGCCCTCCGCCGTTTATGGCCGTTATTGATCCTGATGAGCCTGATGGGCTGCAAAGTGGACCTGTATAGCGGACT
GAGCGAGGATGAAGCCAACCAGATGCTGGCCTTGCTAATGTTGCGCAATGTCGATGCCGAAAAGAAAATCATCAAGGAAG
GCAATGTCACTGTCAGGGTGGAAAAAGAGCAGTTCACCGATGCGGTGGAAGTGCTGCGCCAGCATGGTCTGCCCAGCAAG
CGCACCGAAACCATGGCGGATCTGTTTCCCTCCGGCCAACTGGTCACTTCGCCCGCACAAGAACAAGCCAAGATCGGCTA
TCTGAAGGAACAGCTGCTGGAAAAGATGCTGCGCGGCATGGACGGCGTGATCAGCGCCCAGGTTTCCATCGCGGAAAGCG
TCAGCCAGAACCGGCGGGAGGCGCCTGCGCCGTCCGCCTCGGTCTTCATCAAGTACAGCCCCGGCATCAATATGCAAAGT
CGCGAAACCGATATCAAACGGCTGATCCACACTGGCGTGCCTAATCTGCGCTCGGAAAACATCAGCGTGGTGTTGCAAGC
AGCCGACTATCGCTATCGCCCAACCGCGACTACCGCGCAACCAGCTAAAAACACGCAGAGTTGGCTGCGGAAATACGCCA
TATGGCTTGTCGGCGGCCTAACCCTGCTGGGCTGCGCCGCCGCCATCGGTGTGCTGGCCTGGCGCCGGCGCACGGCCGCA
TCATGA

Upstream 100 bases:

>100_bases
CGCAATCCAAGCTGCTGCACTCCATCGTAGAAGTGGACCTGGTGGCCAAAACCGCGGGCGCCTTGTCGCAAGGCGTGAAC
AAACTGGTGAGCATGCAGTG

Downstream 100 bases:

>100_bases
AACCCGCGATATCCGCCGAACTGCAACGGTTGCATCAGCTGGCTTGGCGCGCCGGCGCCTGGATGGACCAAGGCTGGTGG
CATGAGCTGGACTTGCGGCC

Product: type III secretion system apparatus lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 241; Mature: 241

Protein sequence:

>241_residues
MKALRRLWPLLILMSLMGCKVDLYSGLSEDEANQMLALLMLRNVDAEKKIIKEGNVTVRVEKEQFTDAVEVLRQHGLPSK
RTETMADLFPSGQLVTSPAQEQAKIGYLKEQLLEKMLRGMDGVISAQVSIAESVSQNRREAPAPSASVFIKYSPGINMQS
RETDIKRLIHTGVPNLRSENISVVLQAADYRYRPTATTAQPAKNTQSWLRKYAIWLVGGLTLLGCAAAIGVLAWRRRTAA
S

Sequences:

>Translated_241_residues
MKALRRLWPLLILMSLMGCKVDLYSGLSEDEANQMLALLMLRNVDAEKKIIKEGNVTVRVEKEQFTDAVEVLRQHGLPSK
RTETMADLFPSGQLVTSPAQEQAKIGYLKEQLLEKMLRGMDGVISAQVSIAESVSQNRREAPAPSASVFIKYSPGINMQS
RETDIKRLIHTGVPNLRSENISVVLQAADYRYRPTATTAQPAKNTQSWLRKYAIWLVGGLTLLGCAAAIGVLAWRRRTAA
S
>Mature_241_residues
MKALRRLWPLLILMSLMGCKVDLYSGLSEDEANQMLALLMLRNVDAEKKIIKEGNVTVRVEKEQFTDAVEVLRQHGLPSK
RTETMADLFPSGQLVTSPAQEQAKIGYLKEQLLEKMLRGMDGVISAQVSIAESVSQNRREAPAPSASVFIKYSPGINMQS
RETDIKRLIHTGVPNLRSENISVVLQAADYRYRPTATTAQPAKNTQSWLRKYAIWLVGGLTLLGCAAAIGVLAWRRRTAA
S

Specific function: Unknown

COG id: COG4669

COG function: function code U; Type III secretory pathway, lipoprotein EscJ

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yscJ lipoprotein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003282
- InterPro:   IPR006182 [H]

Pfam domain/function: PF01514 YscJ_FliF [H]

EC number: NA

Molecular weight: Translated: 26754; Mature: 26754

Theoretical pI: Translated: 10.18; Mature: 10.18

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKALRRLWPLLILMSLMGCKVDLYSGLSEDEANQMLALLMLRNVDAEKKIIKEGNVTVRV
CHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCEEEEE
EKEQFTDAVEVLRQHGLPSKRTETMADLFPSGQLVTSPAQEQAKIGYLKEQLLEKMLRGM
EHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHHHHHHHHCC
DGVISAQVSIAESVSQNRREAPAPSASVFIKYSPGINMQSRETDIKRLIHTGVPNLRSEN
CHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCC
ISVVLQAADYRYRPTATTAQPAKNTQSWLRKYAIWLVGGLTLLGCAAAIGVLAWRRRTAA
EEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
S
C
>Mature Secondary Structure
MKALRRLWPLLILMSLMGCKVDLYSGLSEDEANQMLALLMLRNVDAEKKIIKEGNVTVRV
CHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCEEEEE
EKEQFTDAVEVLRQHGLPSKRTETMADLFPSGQLVTSPAQEQAKIGYLKEQLLEKMLRGM
EHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHHHHHHHHCC
DGVISAQVSIAESVSQNRREAPAPSASVFIKYSPGINMQSRETDIKRLIHTGVPNLRSEN
CHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCC
ISVVLQAADYRYRPTATTAQPAKNTQSWLRKYAIWLVGGLTLLGCAAAIGVLAWRRRTAA
EEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
S
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9140973; 11677609 [H]