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The map label for this gene is sodB1 [H]

Identifier: 34497959

GI number: 34497959

Start: 2696450

End: 2697028

Strand: Direct

Name: sodB1 [H]

Synonym: CV_2504

Alternate gene names: 34497959

Gene position: 2696450-2697028 (Clockwise)

Preceding gene: 34497951

Following gene: 34497975

Centisome position: 56.75

GC content: 60.28

Gene sequence:

>579_bases
ATGGAACACAAACTGCCTGAACTGCCGTACGCGCTGGACGCTCTGGCGCCGCACATCTCCAAGGAAACCCTGGAATTCCA
CTACGGCAAGCATCATCAGACCTACATCACCAACCTGAACAACCTGATCAAGGGCACCGAGTTCGAGAACGCCTCCCTGG
AAGAAATCGTCAAGAAATCCTCCGGCGGCATCTTCAACAACGCCGCCCAGGTGTGGAACCACACCTTCTACTGGTTCGGC
CTGGCCCCGAACGCCGGCGGCCAACCGACCGGCGCGCTGGCCGACGCCATCAACGCCAAGTGGGGTTCGTTCGACGAATT
CAAGAAAGCCTTCACCCAGACCGCCATCGGCACCTTCGGCTCCGGCTGGGCCTGGCTGGTGAAGAACAGCGACGGCAGCC
TGGACCTGGTATCCACCAGCAACGCCGCCACCCCGCTGACCACCGACAAGAAGCCGCTGCTGACCTGTGACGTGTGGGAA
CACGCGTATTATATCGACTACCGCAACAGCCGCCCGAACTATCTGGAACACTTCTGGGCGCTGGTGAACTGGGACTTCGT
GGCCAAGAACTTCGCCTGA

Upstream 100 bases:

>100_bases
TATCATTTTAGTCAACTATTGGCCACGCAGAACATATTCCAGTAAACTGCGGTCAAAGCCTCCGCTTATGCGGATTACTC
TACTCAACAAGGAGAGCATA

Downstream 100 bases:

>100_bases
TCCCCCGCGCGCGTTGTGCAAAAGGGCCCGTCGGGCCCTTTTTTCATGCCCGCGCTCAGTGGCCGCTGTCCCGCATCCAC
TGCATGAACTGGTCGAAGGG

Product: superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 192; Mature: 192

Protein sequence:

>192_residues
MEHKLPELPYALDALAPHISKETLEFHYGKHHQTYITNLNNLIKGTEFENASLEEIVKKSSGGIFNNAAQVWNHTFYWFG
LAPNAGGQPTGALADAINAKWGSFDEFKKAFTQTAIGTFGSGWAWLVKNSDGSLDLVSTSNAATPLTTDKKPLLTCDVWE
HAYYIDYRNSRPNYLEHFWALVNWDFVAKNFA

Sequences:

>Translated_192_residues
MEHKLPELPYALDALAPHISKETLEFHYGKHHQTYITNLNNLIKGTEFENASLEEIVKKSSGGIFNNAAQVWNHTFYWFG
LAPNAGGQPTGALADAINAKWGSFDEFKKAFTQTAIGTFGSGWAWLVKNSDGSLDLVSTSNAATPLTTDKKPLLTCDVWE
HAYYIDYRNSRPNYLEHFWALVNWDFVAKNFA
>Mature_192_residues
MEHKLPELPYALDALAPHISKETLEFHYGKHHQTYITNLNNLIKGTEFENASLEEIVKKSSGGIFNNAAQVWNHTFYWFG
LAPNAGGQPTGALADAINAKWGSFDEFKKAFTQTAIGTFGSGWAWLVKNSDGSLDLVSTSNAATPLTTDKKPLLTCDVWE
HAYYIDYRNSRPNYLEHFWALVNWDFVAKNFA

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=201, Percent_Identity=40.7960199004975, Blast_Score=157, Evalue=6e-39,
Organism=Homo sapiens, GI67782305, Length=201, Percent_Identity=40.7960199004975, Blast_Score=157, Evalue=6e-39,
Organism=Homo sapiens, GI67782309, Length=193, Percent_Identity=35.2331606217617, Blast_Score=119, Evalue=1e-27,
Organism=Escherichia coli, GI1787946, Length=192, Percent_Identity=76.0416666666667, Blast_Score=310, Evalue=4e-86,
Organism=Escherichia coli, GI1790342, Length=206, Percent_Identity=43.2038834951456, Blast_Score=162, Evalue=1e-41,
Organism=Caenorhabditis elegans, GI17506561, Length=201, Percent_Identity=37.8109452736318, Blast_Score=139, Evalue=7e-34,
Organism=Caenorhabditis elegans, GI17569479, Length=193, Percent_Identity=35.2331606217617, Blast_Score=133, Evalue=7e-32,
Organism=Saccharomyces cerevisiae, GI6321796, Length=209, Percent_Identity=36.8421052631579, Blast_Score=127, Evalue=8e-31,
Organism=Drosophila melanogaster, GI17136812, Length=195, Percent_Identity=40.5128205128205, Blast_Score=145, Evalue=1e-35,

Paralogues:

None

Copy number: 2020 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 900 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 21590; Mature: 21590

Theoretical pI: Translated: 6.30; Mature: 6.30

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEHKLPELPYALDALAPHISKETLEFHYGKHHQTYITNLNNLIKGTEFENASLEEIVKKS
CCCCCCCCCHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHH
SGGIFNNAAQVWNHTFYWFGLAPNAGGQPTGALADAINAKWGSFDEFKKAFTQTAIGTFG
CCCCCHHHHHHHCCEEEEEEECCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHCCCC
SGWAWLVKNSDGSLDLVSTSNAATPLTTDKKPLLTCDVWEHAYYIDYRNSRPNYLEHFWA
CCEEEEEECCCCCEEEEECCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCHHHHHHHH
LVNWDFVAKNFA
HHHHHHHHCCCC
>Mature Secondary Structure
MEHKLPELPYALDALAPHISKETLEFHYGKHHQTYITNLNNLIKGTEFENASLEEIVKKS
CCCCCCCCCHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHH
SGGIFNNAAQVWNHTFYWFGLAPNAGGQPTGALADAINAKWGSFDEFKKAFTQTAIGTFG
CCCCCHHHHHHHCCEEEEEEECCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHCCCC
SGWAWLVKNSDGSLDLVSTSNAATPLTTDKKPLLTCDVWEHAYYIDYRNSRPNYLEHFWA
CCEEEEEECCCCCEEEEECCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCHHHHHHHH
LVNWDFVAKNFA
HHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8181762; 12910271 [H]