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The map label for this gene is rnk [H]

Identifier: 34497951

GI number: 34497951

Start: 2687283

End: 2687687

Strand: Direct

Name: rnk [H]

Synonym: CV_2496

Alternate gene names: 34497951

Gene position: 2687283-2687687 (Clockwise)

Preceding gene: 34497950

Following gene: 34497959

Centisome position: 56.56

GC content: 67.16

Gene sequence:

>405_bases
ATGTCCGCCACGCCGGCAATCACCGTTTCCTCCCTCGACTACGACAGGCTGGCCGCTTTGCTGGAGAACTGCGAGCACGA
CCACCCGGTCGCCGGCCGCCTGGAGGCGGAACTCGAGCGCGCCGACGTCGTGGACCCTCAAGCGATGCCGTCCAACGTGG
TCACCATGAACAGCTCCGTCCGCATCCGCCTGGGCGACGGCCAGGAAAAGCAGCTGACGCTGGTCTATCCCCGCGACGCC
GACAGCGAGCAGGGACGCATTTCCGTCCTGGCTCCGATAGGCGCGGCCCTGCTCGGCCTGTCCACTGGCCAGAGCATGCA
ATGGCCGACGCCGTCGGGCCATACGGAGCTGACCGTGCTGGAAATCACCTACCAGCCCGAAGCCGCCGGCGAATACCACC
GCTAG

Upstream 100 bases:

>100_bases
ACAGCCTTTGATTCCATTATCATCGACAGCTGAATCCCTCCGGGATTTGTCCATCGGGCACCGCAAGCGGTGCCCTTTGT
CCATTTGCAAGGAGCTTCAT

Downstream 100 bases:

>100_bases
GCTCGCAATCCGGCTTTTCCCATTTATCGCTACGCTCCTGAACCCGCGCGGCGTTCAGCCGCGCTCGGCCGCCACACTGG
CGTCGACAACATCCGCATCA

Product: nucleoside diphosphate kinase regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 134; Mature: 133

Protein sequence:

>134_residues
MSATPAITVSSLDYDRLAALLENCEHDHPVAGRLEAELERADVVDPQAMPSNVVTMNSSVRIRLGDGQEKQLTLVYPRDA
DSEQGRISVLAPIGAALLGLSTGQSMQWPTPSGHTELTVLEITYQPEAAGEYHR

Sequences:

>Translated_134_residues
MSATPAITVSSLDYDRLAALLENCEHDHPVAGRLEAELERADVVDPQAMPSNVVTMNSSVRIRLGDGQEKQLTLVYPRDA
DSEQGRISVLAPIGAALLGLSTGQSMQWPTPSGHTELTVLEITYQPEAAGEYHR
>Mature_133_residues
SATPAITVSSLDYDRLAALLENCEHDHPVAGRLEAELERADVVDPQAMPSNVVTMNSSVRIRLGDGQEKQLTLVYPRDAD
SEQGRISVLAPIGAALLGLSTGQSMQWPTPSGHTELTVLEITYQPEAAGEYHR

Specific function: Rnk and sspA can functionally replace P.aeruginosa alginate regulatory gene algR2 [H]

COG id: COG0782

COG function: function code K; Transcription elongation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786827, Length=131, Percent_Identity=48.8549618320611, Blast_Score=115, Evalue=8e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001437 [H]

Pfam domain/function: PF01272 GreA_GreB [H]

EC number: NA

Molecular weight: Translated: 14496; Mature: 14365

Theoretical pI: Translated: 4.37; Mature: 4.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSATPAITVSSLDYDRLAALLENCEHDHPVAGRLEAELERADVVDPQAMPSNVVTMNSSV
CCCCCEEEEECCCHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCEEEECCEE
RIRLGDGQEKQLTLVYPRDADSEQGRISVLAPIGAALLGLSTGQSMQWPTPSGHTELTVL
EEEECCCCCCEEEEEECCCCCCCCCEEEEEECCCHHHHCCCCCCCCCCCCCCCCCEEEEE
EITYQPEAAGEYHR
EEEECCCCCCCCCC
>Mature Secondary Structure 
SATPAITVSSLDYDRLAALLENCEHDHPVAGRLEAELERADVVDPQAMPSNVVTMNSSV
CCCCEEEEECCCHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCEEEECCEE
RIRLGDGQEKQLTLVYPRDADSEQGRISVLAPIGAALLGLSTGQSMQWPTPSGHTELTVL
EEEECCCCCCEEEEEECCCCCCCCCEEEEEECCCHHHHCCCCCCCCCCCCCCCCCEEEEE
EITYQPEAAGEYHR
EEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]