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The map label for this gene is rcsB [H]

Identifier: 34497856

GI number: 34497856

Start: 2585499

End: 2586194

Strand: Reverse

Name: rcsB [H]

Synonym: CV_2401

Alternate gene names: 34497856

Gene position: 2586194-2585499 (Counterclockwise)

Preceding gene: 34497857

Following gene: 34497855

Centisome position: 54.43

GC content: 61.49

Gene sequence:

>696_bases
ATGAACCTCACCTCATCTTCTACGGAACAAGCGATCCGTGTCATTTTGCTGGATGACCACCTGATGGTTCTGCATGGGCT
CGGCAGCCATCTGGAGAACGTGCCCGACATCAGCCTGACCGGCAGCTTCTCCTCCAGCGGCCAATTGATGCGCACGCTGG
CCGGTGCCGCGGCGCCCCTGGCGGATGTCGCGGTGATCGATTACGCGCTGAGACCGGACGACGTGGACGGACTGAACCTG
ATCCGCGCGATGCGCATACGCTTTCCCTGGCTGCGCATCCTGGTGATGTCCGCCTATTACACCCCCGCCACCGTCGCGCT
GGCCATGCGCGGCGGCGCGCATGGCTTCATCGGCAAGGAACAGGGCATGAGCGAGCTGATTCTCGCCATTCGCCGGCTGG
CGGCCGGACAAACCTATCTGAGCGAAGACATGCGCGAAGCGATGCCGCAACAAAGCGGCGAGGCCTCCATTCCGTCTGAC
GCGCTGCCCAATCTGCTGGACCATCCCGATCTGTCTCCCCGCGAGCGGGAAGTGCTGCGCTGCTGTTTGCTCGGTTTGTC
GGTCAGCGAAATCGCGGTCAAGTTCTCTCGCAGCATCAAGACGATCAGCAATCAGAAACAATCGGCGCTCAAGAAGCTGG
GCCTGCGCAGCGACAACGAGCTATTCCTGCAACAACAACGGCTGGAAGGGCAATGA

Upstream 100 bases:

>100_bases
TCGTACTTTCCCTGGACAGCCAATATCGTCGACAATGAAACCAGACATAGACAGTCAATACAGCGAGCCGCGCCACACCG
TCCCCTCCCCGAGAGCCGTC

Downstream 100 bases:

>100_bases
GGCTGTCAGGGCTGCATCGATGGCTGCTGGCCATGTCGCTGGCGTTCTGCTCCGGATCGAGCGTGGCCGCGAGCCCGTTC
AACGCAGGAGAGCAAGCCTG

Product: transcription regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 231; Mature: 231

Protein sequence:

>231_residues
MNLTSSSTEQAIRVILLDDHLMVLHGLGSHLENVPDISLTGSFSSSGQLMRTLAGAAAPLADVAVIDYALRPDDVDGLNL
IRAMRIRFPWLRILVMSAYYTPATVALAMRGGAHGFIGKEQGMSELILAIRRLAAGQTYLSEDMREAMPQQSGEASIPSD
ALPNLLDHPDLSPREREVLRCCLLGLSVSEIAVKFSRSIKTISNQKQSALKKLGLRSDNELFLQQQRLEGQ

Sequences:

>Translated_231_residues
MNLTSSSTEQAIRVILLDDHLMVLHGLGSHLENVPDISLTGSFSSSGQLMRTLAGAAAPLADVAVIDYALRPDDVDGLNL
IRAMRIRFPWLRILVMSAYYTPATVALAMRGGAHGFIGKEQGMSELILAIRRLAAGQTYLSEDMREAMPQQSGEASIPSD
ALPNLLDHPDLSPREREVLRCCLLGLSVSEIAVKFSRSIKTISNQKQSALKKLGLRSDNELFLQQQRLEGQ
>Mature_231_residues
MNLTSSSTEQAIRVILLDDHLMVLHGLGSHLENVPDISLTGSFSSSGQLMRTLAGAAAPLADVAVIDYALRPDDVDGLNL
IRAMRIRFPWLRILVMSAYYTPATVALAMRGGAHGFIGKEQGMSELILAIRRLAAGQTYLSEDMREAMPQQSGEASIPSD
ALPNLLDHPDLSPREREVLRCCLLGLSVSEIAVKFSRSIKTISNQKQSALKKLGLRSDNELFLQQQRLEGQ

Specific function: Also stimulates ftsZ expression. This suggests that rcsB is a regulator implicated in the regulation of more than one cellular function [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788546, Length=208, Percent_Identity=32.2115384615385, Blast_Score=98, Evalue=4e-22,
Organism=Escherichia coli, GI1790102, Length=210, Percent_Identity=30.4761904761905, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1788222, Length=212, Percent_Identity=25.9433962264151, Blast_Score=68, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR016032
- InterPro:   IPR001789
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 25253; Mature: 25253

Theoretical pI: Translated: 6.68; Mature: 6.68

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLTSSSTEQAIRVILLDDHLMVLHGLGSHLENVPDISLTGSFSSSGQLMRTLAGAAAPL
CCCCCCCHHHHEEEEEECCHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHCCH
ADVAVIDYALRPDDVDGLNLIRAMRIRFPWLRILVMSAYYTPATVALAMRGGAHGFIGKE
HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCC
QGMSELILAIRRLAAGQTYLSEDMREAMPQQSGEASIPSDALPNLLDHPDLSPREREVLR
CCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCHHHCCHHHCCCCCCHHHHHHHH
CCLLGLSVSEIAVKFSRSIKTISNQKQSALKKLGLRSDNELFLQQQRLEGQ
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCC
>Mature Secondary Structure
MNLTSSSTEQAIRVILLDDHLMVLHGLGSHLENVPDISLTGSFSSSGQLMRTLAGAAAPL
CCCCCCCHHHHEEEEEECCHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHCCH
ADVAVIDYALRPDDVDGLNLIRAMRIRFPWLRILVMSAYYTPATVALAMRGGAHGFIGKE
HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCC
QGMSELILAIRRLAAGQTYLSEDMREAMPQQSGEASIPSDALPNLLDHPDLSPREREVLR
CCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCHHHCCHHHCCCCCCHHHHHHHH
CCLLGLSVSEIAVKFSRSIKTISNQKQSALKKLGLRSDNELFLQQQRLEGQ
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]