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The map label for this gene is rpe [H]

Identifier: 34497637

GI number: 34497637

Start: 2354637

End: 2355320

Strand: Reverse

Name: rpe [H]

Synonym: CV_2182

Alternate gene names: 34497637

Gene position: 2355320-2354637 (Counterclockwise)

Preceding gene: 34497641

Following gene: 34497636

Centisome position: 49.57

GC content: 63.74

Gene sequence:

>684_bases
ATGCGCACTTTCCGTATCGCCCCCAGCATTCTGTCCGCCGATTTCGCCCGCCTGGGCCAGGAAGTCAAAGATGTCGTCGC
CGCCGGCGCCGACATCATCCACTTCGATGTGATGGACAACCACTACGTCCCCAATCTGACCATGGGCCCGATGTTCTGCG
AGGCCATCCGCCCGCACAGCAGCGCGCCGATCGATGTCCACCTGATGGTCAAGCCGGTGGACGCGCTGGCAGCCGCCTTC
GCCAAGGCCGGCGCCGACATCATCACCTTCCACCCGGAAGGATCGGAGCACATCGACCGCACGCTGGGCCTGATCAAGGA
CGCCGGCTGCAAGGCCGGCCTGGTGTTCAACCCGGCCACGCCGCTGTCCTACCTGGACCACGTGATGGACAAGCTGGACA
TGATCCTGATCATGTCGGTGAACCCTGGTTTCGGCGGACAATCATTCATTCCGCACGCGCTGGAAAAGATCAAGCTGGCG
CGTCGGCGCATCGACGAATACACCGCCAAGCATGGCGGCGAGATCTGGCTGGAAGTGGACGGCGGCGTGAAGGTGGACAA
TATCGCCCAGGTGGCCGCAGCCGGCGCCGACACCTTCGTGGCCGGCTCCGCCATCTACGGCCAGAAAGACTACAAGGCGG
TCATCGACGCGATGCGCGCCGAACTGGCCCGCGTCCAAGCATAA

Upstream 100 bases:

>100_bases
TTCTCCTGATTGATCTTGGTTTTCATTTTATCCGGCCAAACCGCTTTTGGCGCGGTAGAATGCCGGGCATTCCTCGTTTA
TCGATGTCAGAGCAATCGCC

Downstream 100 bases:

>100_bases
GAACGCTGCGCCGCCATTTCACGCATCAAGGGGTAAGACCATGTATGCATTCATCGTCACCGGCGCTTCGCGCGGCCTGG
GCTACGCCATCTGCGAGACG

Product: ribulose-phosphate 3-epimerase

Products: NA

Alternate protein names: Pentose-5-phosphate 3-epimerase; PPE; R5P3E [H]

Number of amino acids: Translated: 227; Mature: 227

Protein sequence:

>227_residues
MRTFRIAPSILSADFARLGQEVKDVVAAGADIIHFDVMDNHYVPNLTMGPMFCEAIRPHSSAPIDVHLMVKPVDALAAAF
AKAGADIITFHPEGSEHIDRTLGLIKDAGCKAGLVFNPATPLSYLDHVMDKLDMILIMSVNPGFGGQSFIPHALEKIKLA
RRRIDEYTAKHGGEIWLEVDGGVKVDNIAQVAAAGADTFVAGSAIYGQKDYKAVIDAMRAELARVQA

Sequences:

>Translated_227_residues
MRTFRIAPSILSADFARLGQEVKDVVAAGADIIHFDVMDNHYVPNLTMGPMFCEAIRPHSSAPIDVHLMVKPVDALAAAF
AKAGADIITFHPEGSEHIDRTLGLIKDAGCKAGLVFNPATPLSYLDHVMDKLDMILIMSVNPGFGGQSFIPHALEKIKLA
RRRIDEYTAKHGGEIWLEVDGGVKVDNIAQVAAAGADTFVAGSAIYGQKDYKAVIDAMRAELARVQA
>Mature_227_residues
MRTFRIAPSILSADFARLGQEVKDVVAAGADIIHFDVMDNHYVPNLTMGPMFCEAIRPHSSAPIDVHLMVKPVDALAAAF
AKAGADIITFHPEGSEHIDRTLGLIKDAGCKAGLVFNPATPLSYLDHVMDKLDMILIMSVNPGFGGQSFIPHALEKIKLA
RRRIDEYTAKHGGEIWLEVDGGVKVDNIAQVAAAGADTFVAGSAIYGQKDYKAVIDAMRAELARVQA

Specific function: Unknown

COG id: COG0036

COG function: function code G; Pentose-5-phosphate-3-epimerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribulose-phosphate 3-epimerase family [H]

Homologues:

Organism=Homo sapiens, GI40385883, Length=217, Percent_Identity=37.7880184331797, Blast_Score=149, Evalue=2e-36,
Organism=Homo sapiens, GI219879828, Length=217, Percent_Identity=35.9447004608295, Blast_Score=140, Evalue=1e-33,
Organism=Homo sapiens, GI24307923, Length=172, Percent_Identity=31.9767441860465, Blast_Score=91, Evalue=1e-18,
Organism=Escherichia coli, GI1789788, Length=227, Percent_Identity=70.4845814977974, Blast_Score=328, Evalue=2e-91,
Organism=Escherichia coli, GI1790523, Length=201, Percent_Identity=35.8208955223881, Blast_Score=145, Evalue=2e-36,
Organism=Escherichia coli, GI1790754, Length=208, Percent_Identity=32.2115384615385, Blast_Score=100, Evalue=9e-23,
Organism=Caenorhabditis elegans, GI17552948, Length=224, Percent_Identity=39.2857142857143, Blast_Score=147, Evalue=5e-36,
Organism=Saccharomyces cerevisiae, GI6322341, Length=232, Percent_Identity=36.6379310344828, Blast_Score=149, Evalue=4e-37,
Organism=Drosophila melanogaster, GI24586301, Length=216, Percent_Identity=35.6481481481481, Blast_Score=139, Evalue=2e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000056
- InterPro:   IPR011060 [H]

Pfam domain/function: PF00834 Ribul_P_3_epim [H]

EC number: =5.1.3.1 [H]

Molecular weight: Translated: 24451; Mature: 24451

Theoretical pI: Translated: 6.23; Mature: 6.23

Prosite motif: PS01085 RIBUL_P_3_EPIMER_1 ; PS01086 RIBUL_P_3_EPIMER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTFRIAPSILSADFARLGQEVKDVVAAGADIIHFDVMDNHYVPNLTMGPMFCEAIRPHS
CCCEECCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHCCCC
SAPIDVHLMVKPVDALAAAFAKAGADIITFHPEGSEHIDRTLGLIKDAGCKAGLVFNPAT
CCCEEEEEEECCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCEEECCCC
PLSYLDHVMDKLDMILIMSVNPGFGGQSFIPHALEKIKLARRRIDEYTAKHGGEIWLEVD
HHHHHHHHHHHHCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEC
GGVKVDNIAQVAAAGADTFVAGSAIYGQKDYKAVIDAMRAELARVQA
CCCCHHHHHHHHHCCCCHHEECCHHCCCHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MRTFRIAPSILSADFARLGQEVKDVVAAGADIIHFDVMDNHYVPNLTMGPMFCEAIRPHS
CCCEECCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHCCCC
SAPIDVHLMVKPVDALAAAFAKAGADIITFHPEGSEHIDRTLGLIKDAGCKAGLVFNPAT
CCCEEEEEEECCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCEEECCCC
PLSYLDHVMDKLDMILIMSVNPGFGGQSFIPHALEKIKLARRRIDEYTAKHGGEIWLEVD
HHHHHHHHHHHHCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEC
GGVKVDNIAQVAAAGADTFVAGSAIYGQKDYKAVIDAMRAELARVQA
CCCCHHHHHHHHHCCCCHHEECCHHCCCHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]