Click here to switch to the map view.

The map label for this gene is rhaR [H]

Identifier: 34497556

GI number: 34497556

Start: 2291667

End: 2292728

Strand: Reverse

Name: rhaR [H]

Synonym: CV_2101

Alternate gene names: 34497556

Gene position: 2292728-2291667 (Counterclockwise)

Preceding gene: 34497566

Following gene: 34497550

Centisome position: 48.26

GC content: 66.57

Gene sequence:

>1062_bases
ATGAACGCCTGCATAGACCTGCTTTGCCTGCCGAATTGCCTCGCCGGAACGCTGTTTTCCGCGATAGACGTGCTGCATGC
CGCCAACAAACTGTGGCATCTGCGCCACCCTCGCAGCAAAACTCCGCCATTCAGCTGGCGGCTGCTGGACAGCGACGGCG
AGGAGCTGCCCCTGCCGGCATGGCTGCCCGCCTCCCCCGCTCGTCCTCAGGCCGCGCTCTCCGCGCTGCTGGTGCCCGGC
CTGGACATGGATAGCGTTCCTCAGTTGAAGCAACTGCTGGATCAATCCGGCAAAGCGCAGCAAATGATCGCCCGCCGCCA
TGCCGCGGGCGACGTCATCGCCACCAATTACAACGGCGCGGCCTTGCTGGCCCGCGCCGGCATCCTGGACGGACGCAACG
CCACCATCAGCTGGATGATCGCCGGCTGGTTCTCCAGCAATCATCCGCGAGTGCATCTGCTGATGGACAGGCCGGTCACC
CAGGATCACGGCATCTATTGCAGCGGCGCGCCAGCCTCCTCCACCGAGCTGCTGCTGGAGTTGGTCCGACATTTTGCCGG
AGACGAGCTGGCGCAGCGCTGTACCAACGGCCTGTTGTACCTGCCGGCGCGTTTCGAACAATCGGCGCAGACGCTGCCGG
CGCTGAGCACGCCAACCCGCGACAGCGTGGTGTTCAAGGCCCGCCGTTGGCTGGAACAGCATGTCGCCGAACCTTACAGC
CTGGATCTGGCAGCCGCGGCGGCGGCCGTCAGCAGCCGTACCCTGCTGCGCCATTTCCGCGAGGTGGCGGACATGACGCC
GCTGGATTATCTGCACAAGCTGAGGGTGGAGCGCGCCAAACTGCTGCTGGAAGTCACCACGCTCGATCTGGCCGGCATCA
TGGAGCAGTGCGGCTACGACGACCCAAGCGCCTTCCGCCGGCTGTTCCGAAGGCAGACCGGGCTGACGCCCACCGCCTAC
CGCCGCGCATACGCGCTGCGCGCCTCGCGCCAGCGCTGGCGCGCGCACGACTCGATACCGCAACAGCCGGAGGCTCGCCA
AAGCGGCGCCGCATGCGCCTGA

Upstream 100 bases:

>100_bases
GACATTCGGCATAGTAAATCAAAATATGAAATGCATTTGAACTTGATTTTACGAGCCGATTTCGCCAAGGTTAAAGCGGA
TACCGCCAGGGCAGACTGCC

Downstream 100 bases:

>100_bases
CGCCGCTGGAATACTCCTGGATTGCGCTCAGGGCGTCACATGCATGTACGGGGTGGTCGTCAGCGTGGCGGAAATCGCGC
AGCCGCCGGCCAGCGGCGCG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: L-rhamnose operon transcriptional activator rhaR [H]

Number of amino acids: Translated: 353; Mature: 353

Protein sequence:

>353_residues
MNACIDLLCLPNCLAGTLFSAIDVLHAANKLWHLRHPRSKTPPFSWRLLDSDGEELPLPAWLPASPARPQAALSALLVPG
LDMDSVPQLKQLLDQSGKAQQMIARRHAAGDVIATNYNGAALLARAGILDGRNATISWMIAGWFSSNHPRVHLLMDRPVT
QDHGIYCSGAPASSTELLLELVRHFAGDELAQRCTNGLLYLPARFEQSAQTLPALSTPTRDSVVFKARRWLEQHVAEPYS
LDLAAAAAAVSSRTLLRHFREVADMTPLDYLHKLRVERAKLLLEVTTLDLAGIMEQCGYDDPSAFRRLFRRQTGLTPTAY
RRAYALRASRQRWRAHDSIPQQPEARQSGAACA

Sequences:

>Translated_353_residues
MNACIDLLCLPNCLAGTLFSAIDVLHAANKLWHLRHPRSKTPPFSWRLLDSDGEELPLPAWLPASPARPQAALSALLVPG
LDMDSVPQLKQLLDQSGKAQQMIARRHAAGDVIATNYNGAALLARAGILDGRNATISWMIAGWFSSNHPRVHLLMDRPVT
QDHGIYCSGAPASSTELLLELVRHFAGDELAQRCTNGLLYLPARFEQSAQTLPALSTPTRDSVVFKARRWLEQHVAEPYS
LDLAAAAAAVSSRTLLRHFREVADMTPLDYLHKLRVERAKLLLEVTTLDLAGIMEQCGYDDPSAFRRLFRRQTGLTPTAY
RRAYALRASRQRWRAHDSIPQQPEARQSGAACA
>Mature_353_residues
MNACIDLLCLPNCLAGTLFSAIDVLHAANKLWHLRHPRSKTPPFSWRLLDSDGEELPLPAWLPASPARPQAALSALLVPG
LDMDSVPQLKQLLDQSGKAQQMIARRHAAGDVIATNYNGAALLARAGILDGRNATISWMIAGWFSSNHPRVHLLMDRPVT
QDHGIYCSGAPASSTELLLELVRHFAGDELAQRCTNGLLYLPARFEQSAQTLPALSTPTRDSVVFKARRWLEQHVAEPYS
LDLAAAAAAVSSRTLLRHFREVADMTPLDYLHKLRVERAKLLLEVTTLDLAGIMEQCGYDDPSAFRRLFRRQTGLTPTAY
RRAYALRASRQRWRAHDSIPQQPEARQSGAACA

Specific function: Activates expression of the rhaSR operon in response to L-rhamnose [H]

COG id: COG4977

COG function: function code K; Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 HTH araC/xylS-type DNA-binding domains [H]

Homologues:

Organism=Escherichia coli, GI171474011, Length=135, Percent_Identity=31.1111111111111, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1790339, Length=94, Percent_Identity=34.0425531914894, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1788725, Length=108, Percent_Identity=27.7777777777778, Blast_Score=62, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 39061; Mature: 39061

Theoretical pI: Translated: 8.86; Mature: 8.86

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNACIDLLCLPNCLAGTLFSAIDVLHAANKLWHLRHPRSKTPPFSWRLLDSDGEELPLPA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCC
WLPASPARPQAALSALLVPGLDMDSVPQLKQLLDQSGKAQQMIARRHAAGDVIATNYNGA
CCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCEEEECCCCH
ALLARAGILDGRNATISWMIAGWFSSNHPRVHLLMDRPVTQDHGIYCSGAPASSTELLLE
HHHHHHCCCCCCCCEEEEEEEEEECCCCCEEEEEECCCCCCCCCEEECCCCCCHHHHHHH
LVRHFAGDELAQRCTNGLLYLPARFEQSAQTLPALSTPTRDSVVFKARRWLEQHVAEPYS
HHHHHCCHHHHHHHCCCEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCC
LDLAAAAAAVSSRTLLRHFREVADMTPLDYLHKLRVERAKLLLEVTTLDLAGIMEQCGYD
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
DPSAFRRLFRRQTGLTPTAYRRAYALRASRQRWRAHDSIPQQPEARQSGAACA
CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCCCC
>Mature Secondary Structure
MNACIDLLCLPNCLAGTLFSAIDVLHAANKLWHLRHPRSKTPPFSWRLLDSDGEELPLPA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCC
WLPASPARPQAALSALLVPGLDMDSVPQLKQLLDQSGKAQQMIARRHAAGDVIATNYNGA
CCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCEEEECCCCH
ALLARAGILDGRNATISWMIAGWFSSNHPRVHLLMDRPVTQDHGIYCSGAPASSTELLLE
HHHHHHCCCCCCCCEEEEEEEEEECCCCCEEEEEECCCCCCCCCEEECCCCCCHHHHHHH
LVRHFAGDELAQRCTNGLLYLPARFEQSAQTLPALSTPTRDSVVFKARRWLEQHVAEPYS
HHHHHCCHHHHHHHCCCEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCC
LDLAAAAAAVSSRTLLRHFREVADMTPLDYLHKLRVERAKLLLEVTTLDLAGIMEQCGYD
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
DPSAFRRLFRRQTGLTPTAYRRAYALRASRQRWRAHDSIPQQPEARQSGAACA
CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA