| Definition | Chromobacterium violaceum ATCC 12472 chromosome, complete genome. |
|---|---|
| Accession | NC_005085 |
| Length | 4,751,080 |
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The map label for this gene is sltY [H]
Identifier: 34497489
GI number: 34497489
Start: 2216314
End: 2218203
Strand: Reverse
Name: sltY [H]
Synonym: CV_2034
Alternate gene names: 34497489
Gene position: 2218203-2216314 (Counterclockwise)
Preceding gene: 34497490
Following gene: 34497488
Centisome position: 46.69
GC content: 67.35
Gene sequence:
>1890_bases ATGAAAGCTTTGACCACCCCCATCCGCCTGGCGGGCCTGACCCTGGCCCTGGGCGCCGCCCTGCCCGCCTTCGCCGGCCC GGACGACACCCTGCTCTCCGCCCGCGACGCCTTCCGCGCCAATGACCTGGCCAAGCTGGCCGCCATCGGCGACAAGCTGC CGGACACCTATCCGCTGAAGGACTACCCCGATTACTGGCTGACCTGGAAGGCGCTGGACCGCAACGACGACGCCCAGGTG CGGCGCTTCCTGTCCCGGGTGCAGGAAGGCCTGATGCCGGAGCGGATACGCAACGAATGGGTGAAGAAGCTGGGCCAGCG CGAGGACTGGACCGCCTTCGCCGAGGAATGGAAGAAGCTGCCGGCGGAGGGCCGCGACGAGGAATCGAACTGCTATGGCC AATTGATGCAGCTGCGCCAAGGCCAGAAGCCCGACAACCTGGACCGTTTCCTGGAAGGCAAACCCGCGCCTGACGGCTGC AACCGGCTGATAGACATGGCCTACGCCCGCGGCGCGCTGAGCCAGGACTGGCTGTGGCGCCGCGCCCGGCTGCTGCTGGC CGGCAACTACCTGACCCAGGCGCGCCAGCTGGCCAGCGACACCCAATTGCCGCTCGACAACGCCGCGCTGAACAAGCCCG CGCTCGCCAGCCCGGCCACGCCGGGCGGCCAGGAGGCCATCCTCTACGACGTGGTGCGCAAGGGCAAAACCGATCTGGAC GGCGCGGCGGCGATGCTGTCTCGCATCGGCGGCGAACTGACGCCGGACCGCGCCGGCTTCGGCTGGGGCCAGCTGGCGCT GCTGTCCGCCCGCAAACAGCAAGCCGGCCAGGCGCTGCAATGGTTTGAAAAGGCCGACCCGCGCCAGCTAACCACGGACC AGTGGGAATGGTGGGCGCGCTCGGCGCTGCGGCTGGAGCAATGGAGCCAGCTGGACGGCATCATCCGCCGCATGCCTCAG GATCTGGCGAGCAAGCCGTCCTGGCGCTACTGGCTGGCCCGTTCGCTGAAACAGCAGGGCAAGCCCGCCGAGGCCCTGCC GCTGTTCAGCCAGGCCAGCGTCGGCCACAACTACTACGCGCTGCTGTCGCTGGAAGAGCTGGGCAACAGCCTGTCCGCAT CCGCCAGCAAGACCACGCCGACCAGCCAGGATGTCAGCAAGCTGAAGTCCGACCCGGCCATCCGCCGCTCGCTGGCGCTG TTGTCCGTCGCCGAAATCTACACCAAGCCCGAATTCCGCACCGACGCGCAGCGCGAATGGCGCTGGGCGATGCGCGGCCG CAACGACATGGAGCTGCTGGCCGCCGCCGAGATCGCGCGCAAGGAAGGCTTCTACGACATGGCCATCTACAGCGCGGAGC GCACCAAGGAAGAACACGATTTCTCGCTGCGCTACCTGACGCCCTATCGCGAAGTCACGCAGAAATACGCGCGCCAGCTG GACATCGACGACGCCTGGGTTTACGGCCTGATCCGCCAGGAAAGCCGCTTCATCACCATGGCGCGCTCCGGCGTAGGCGC CTCCGGCCTGATGCAGCTGATGCCGGCCACCGCCAAGTGGGCGGCCAAGAAGATCGGCCTCACCCACTTCGCGGTCAACG ACATCGACACCAATGTCCAGCTCGGCACCTGGTACCTGCGCTACGTGCTGGACAATCTGTCCGGCAACCAGGTGATGGCC ACCGCCGCCTACAACGCCGGCCCCGGCCGCGCCCGCAACTGGCAGGCCGACCGCGCGCTGGACGGCACCATCTACGCCGA GACCATACCCTTCAGCGAAACGCGCGACTACGTGCAGAAAGTGATGGCCAACGCCGCCTACTATTCCAGCACCTTCGGCC ACGCCAATATTTCGCTGAAGAACCGCATGGGCATCGTGCCCTCGCGTTGA
Upstream 100 bases:
>100_bases CGCCGCGGCCTGTCATATTGAAATAAACATCGCGCGCGCGGGACATCCCGCCGCCGCCGCGCCGCCCAGCTGCGCGGAGA CTCCAACAGACGGAACGAAA
Downstream 100 bases:
>100_bases GGACGCCCGCCGTGATGAACGCAAGGAAAACGACATGACAGCGCTGAAAATCTGCCTGATAGGCGGCAGCGGCTTCATCG GCCGCCACCTGGCCGCCCAA
Product: peptidoglycan N-acetylmuramoylhydrolase
Products: 1,6-Anhydrobond [C]
Alternate protein names: Exomuramidase; Peptidoglycan lytic exotransglycosylase; Slt70 [H]
Number of amino acids: Translated: 629; Mature: 629
Protein sequence:
>629_residues MKALTTPIRLAGLTLALGAALPAFAGPDDTLLSARDAFRANDLAKLAAIGDKLPDTYPLKDYPDYWLTWKALDRNDDAQV RRFLSRVQEGLMPERIRNEWVKKLGQREDWTAFAEEWKKLPAEGRDEESNCYGQLMQLRQGQKPDNLDRFLEGKPAPDGC NRLIDMAYARGALSQDWLWRRARLLLAGNYLTQARQLASDTQLPLDNAALNKPALASPATPGGQEAILYDVVRKGKTDLD GAAAMLSRIGGELTPDRAGFGWGQLALLSARKQQAGQALQWFEKADPRQLTTDQWEWWARSALRLEQWSQLDGIIRRMPQ DLASKPSWRYWLARSLKQQGKPAEALPLFSQASVGHNYYALLSLEELGNSLSASASKTTPTSQDVSKLKSDPAIRRSLAL LSVAEIYTKPEFRTDAQREWRWAMRGRNDMELLAAAEIARKEGFYDMAIYSAERTKEEHDFSLRYLTPYREVTQKYARQL DIDDAWVYGLIRQESRFITMARSGVGASGLMQLMPATAKWAAKKIGLTHFAVNDIDTNVQLGTWYLRYVLDNLSGNQVMA TAAYNAGPGRARNWQADRALDGTIYAETIPFSETRDYVQKVMANAAYYSSTFGHANISLKNRMGIVPSR
Sequences:
>Translated_629_residues MKALTTPIRLAGLTLALGAALPAFAGPDDTLLSARDAFRANDLAKLAAIGDKLPDTYPLKDYPDYWLTWKALDRNDDAQV RRFLSRVQEGLMPERIRNEWVKKLGQREDWTAFAEEWKKLPAEGRDEESNCYGQLMQLRQGQKPDNLDRFLEGKPAPDGC NRLIDMAYARGALSQDWLWRRARLLLAGNYLTQARQLASDTQLPLDNAALNKPALASPATPGGQEAILYDVVRKGKTDLD GAAAMLSRIGGELTPDRAGFGWGQLALLSARKQQAGQALQWFEKADPRQLTTDQWEWWARSALRLEQWSQLDGIIRRMPQ DLASKPSWRYWLARSLKQQGKPAEALPLFSQASVGHNYYALLSLEELGNSLSASASKTTPTSQDVSKLKSDPAIRRSLAL LSVAEIYTKPEFRTDAQREWRWAMRGRNDMELLAAAEIARKEGFYDMAIYSAERTKEEHDFSLRYLTPYREVTQKYARQL DIDDAWVYGLIRQESRFITMARSGVGASGLMQLMPATAKWAAKKIGLTHFAVNDIDTNVQLGTWYLRYVLDNLSGNQVMA TAAYNAGPGRARNWQADRALDGTIYAETIPFSETRDYVQKVMANAAYYSSTFGHANISLKNRMGIVPSR >Mature_629_residues MKALTTPIRLAGLTLALGAALPAFAGPDDTLLSARDAFRANDLAKLAAIGDKLPDTYPLKDYPDYWLTWKALDRNDDAQV RRFLSRVQEGLMPERIRNEWVKKLGQREDWTAFAEEWKKLPAEGRDEESNCYGQLMQLRQGQKPDNLDRFLEGKPAPDGC NRLIDMAYARGALSQDWLWRRARLLLAGNYLTQARQLASDTQLPLDNAALNKPALASPATPGGQEAILYDVVRKGKTDLD GAAAMLSRIGGELTPDRAGFGWGQLALLSARKQQAGQALQWFEKADPRQLTTDQWEWWARSALRLEQWSQLDGIIRRMPQ DLASKPSWRYWLARSLKQQGKPAEALPLFSQASVGHNYYALLSLEELGNSLSASASKTTPTSQDVSKLKSDPAIRRSLAL LSVAEIYTKPEFRTDAQREWRWAMRGRNDMELLAAAEIARKEGFYDMAIYSAERTKEEHDFSLRYLTPYREVTQKYARQL DIDDAWVYGLIRQESRFITMARSGVGASGLMQLMPATAKWAAKKIGLTHFAVNDIDTNVQLGTWYLRYVLDNLSGNQVMA TAAYNAGPGRARNWQADRALDGTIYAETIPFSETRDYVQKVMANAAYYSSTFGHANISLKNRMGIVPSR
Specific function: Murein-degrading enzyme. Catalyzes the cleavage of the glycosidic bonds between N-acetylmuramic acid and N- acetylglucosamine residues in peptidoglycan. May play a role in recycling of muropeptides during cell elongation and/or cell division [H]
COG id: COG0741
COG function: function code M; Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains)
Gene ontology:
Cell location: Periplasm. Note=Tightly associated with the murein sacculus (By similarity) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the transglycosylase slt family [H]
Homologues:
Organism=Escherichia coli, GI87082441, Length=587, Percent_Identity=27.0868824531516, Blast_Score=160, Evalue=3e-40,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016026 - InterPro: IPR008258 - InterPro: IPR012289 - InterPro: IPR008939 - InterPro: IPR000189 [H]
Pfam domain/function: PF01464 SLT [H]
EC number: 3.2.1.- [C]
Molecular weight: Translated: 70776; Mature: 70776
Theoretical pI: Translated: 9.50; Mature: 9.50
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKALTTPIRLAGLTLALGAALPAFAGPDDTLLSARDAFRANDLAKLAAIGDKLPDTYPLK CCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC DYPDYWLTWKALDRNDDAQVRRFLSRVQEGLMPERIRNEWVKKLGQREDWTAFAEEWKKL CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHC PAEGRDEESNCYGQLMQLRQGQKPDNLDRFLEGKPAPDGCNRLIDMAYARGALSQDWLWR CCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHH RARLLLAGNYLTQARQLASDTQLPLDNAALNKPALASPATPGGQEAILYDVVRKGKTDLD HHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCH GAAAMLSRIGGELTPDRAGFGWGQLALLSARKQQAGQALQWFEKADPRQLTTDQWEWWAR HHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH SALRLEQWSQLDGIIRRMPQDLASKPSWRYWLARSLKQQGKPAEALPLFSQASVGHNYYA HHHHHHHHHHHHHHHHHCCHHHHCCCCHHHHHHHHHHHCCCCCHHCCCHHHHCCCCCEEE LLSLEELGNSLSASASKTTPTSQDVSKLKSDPAIRRSLALLSVAEIYTKPEFRTDAQREW EEEHHHHCCHHCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHH RWAMRGRNDMELLAAAEIARKEGFYDMAIYSAERTKEEHDFSLRYLTPYREVTQKYARQL HHHHCCCCHHHHHHHHHHHHHCCCHHHEEECHHHCCHHCCCEEEEECHHHHHHHHHHHHC DIDDAWVYGLIRQESRFITMARSGVGASGLMQLMPATAKWAAKKIGLTHFAVNDIDTNVQ CCCHHHHHHHHHHCCCEEEEHHCCCCHHHHHHHHCHHHHHHHHHHCCCEEEECCCCCCCC LGTWYLRYVLDNLSGNQVMATAAYNAGPGRARNWQADRALDGTIYAETIPFSETRDYVQK HHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHH VMANAAYYSSTFGHANISLKNRMGIVPSR HHHHHHHHHCCCCCCEEEECCCCCCCCCC >Mature Secondary Structure MKALTTPIRLAGLTLALGAALPAFAGPDDTLLSARDAFRANDLAKLAAIGDKLPDTYPLK CCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC DYPDYWLTWKALDRNDDAQVRRFLSRVQEGLMPERIRNEWVKKLGQREDWTAFAEEWKKL CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHC PAEGRDEESNCYGQLMQLRQGQKPDNLDRFLEGKPAPDGCNRLIDMAYARGALSQDWLWR CCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHH RARLLLAGNYLTQARQLASDTQLPLDNAALNKPALASPATPGGQEAILYDVVRKGKTDLD HHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCH GAAAMLSRIGGELTPDRAGFGWGQLALLSARKQQAGQALQWFEKADPRQLTTDQWEWWAR HHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH SALRLEQWSQLDGIIRRMPQDLASKPSWRYWLARSLKQQGKPAEALPLFSQASVGHNYYA HHHHHHHHHHHHHHHHHCCHHHHCCCCHHHHHHHHHHHCCCCCHHCCCHHHHCCCCCEEE LLSLEELGNSLSASASKTTPTSQDVSKLKSDPAIRRSLALLSVAEIYTKPEFRTDAQREW EEEHHHHCCHHCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHH RWAMRGRNDMELLAAAEIARKEGFYDMAIYSAERTKEEHDFSLRYLTPYREVTQKYARQL HHHHCCCCHHHHHHHHHHHHHCCCHHHEEECHHHCCHHCCCEEEEECHHHHHHHHHHHHC DIDDAWVYGLIRQESRFITMARSGVGASGLMQLMPATAKWAAKKIGLTHFAVNDIDTNVQ CCCHHHHHHHHHHCCCEEEEHHCCCCHHHHHHHHCHHHHHHHHHHCCCEEEECCCCCCCC LGTWYLRYVLDNLSGNQVMATAAYNAGPGRARNWQADRALDGTIYAETIPFSETRDYVQK HHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHH VMANAAYYSSTFGHANISLKNRMGIVPSR HHHHHHHHHCCCCCCEEEECCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: Muramic Acid Residue (N-Acetylmuramic Acid And N-Acetylglucosamine Residues) [C]
Specific reaction: Cleavage Of The Beta-1,4-Glycosidic Bond Between N-Acetylmuramic Acid And N-Acetylglucosamine Residues, Thereby Conserving The Energy In A Newly Synthesized 1,6-Anhydrobond In The Muramic Acid Residue. [C]
General reaction: Cleavage Of The Beta-1,4-Glycosidic Bond [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]