| Definition | Chromobacterium violaceum ATCC 12472 chromosome, complete genome. |
|---|---|
| Accession | NC_005085 |
| Length | 4,751,080 |
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The map label for this gene is 34497459
Identifier: 34497459
GI number: 34497459
Start: 2185523
End: 2186245
Strand: Direct
Name: 34497459
Synonym: CV_2004
Alternate gene names: NA
Gene position: 2185523-2186245 (Clockwise)
Preceding gene: 34497456
Following gene: 34497460
Centisome position: 46.0
GC content: 64.73
Gene sequence:
>723_bases ATGATACCCGCAAGCCAGCTGACCGACTATCTGCGAGAGCAGGCGCTGAAACTCGACATGACCGAACTGCAGATCGCGGT GATGACGCTGCAGGCCGTGATCGCCGTGGACAAGCCGGCGCCCAGCCGCGACCTGTACCGCTACAAGGTGCCCAAGCTGG GCGAGGGCGGCAGCTGCTCGCTGTTCGACGAGCTGGACGAAACCCCGTACGATCTGCGCCTGGCGCTGGGCGCGGAAACG CCCGAGACCACCGCGGCGTTGGTGAATCTGAGCGCGCTGCTCGACTCGGTCAATGCCAAGATCGGCGCCGACTGGCTGGG CATCTACCGCAAGATCGGCGCCGGCAAGGGCGCGGTGCTGGTCAAGCTGGCCTACAAGGGCATGGAAAGCCGCGCTGAAT TCCCGCTGACCGAGGAATTCGCTGAGTTCAGCAACAACAGCCGCGTCGGCCTGACCGGTTGGGCGGTGGTGGTGGACGAT GTGGAGCAATGGCGGGCCGAGGGCGGCGGCTATTACGAGTGCGATCCCAAAGTGAAGAGCGAGATCTGCCTGCCGGTGCT GCACAGCGACGACAATGTGCTGGGCATTATCGATGCCGAGTCGTTCGCCGCCGGCCATTTCACGCCGGAACGCCAGGTGT GGCTGGCCGCGCTGGCCATCGTGCTGCCGCAGCTGCTGATCAAGCTGCCGCCGCTTGAAAACGGGGAAACCCTCCCCAAC TAA
Upstream 100 bases:
>100_bases ATATAAGAGTGGCGAAATGGCGAAGCGTGGTCGGGTTTGATATCCTGTGGCGTTTCGAATTCAAGCGCGCTCCGGCGCGC CGCTGTTCAGGAGTCTCCCC
Downstream 100 bases:
>100_bases GCATCATCCAGGCCGCCGCGCGGCCTTTTCGCATTGCACCCCTCAGCGTTGGAGAAGTCATGTCGCCGCACCCGCAACCC GCTCCCGAACCCGTCATCCA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 240; Mature: 240
Protein sequence:
>240_residues MIPASQLTDYLREQALKLDMTELQIAVMTLQAVIAVDKPAPSRDLYRYKVPKLGEGGSCSLFDELDETPYDLRLALGAET PETTAALVNLSALLDSVNAKIGADWLGIYRKIGAGKGAVLVKLAYKGMESRAEFPLTEEFAEFSNNSRVGLTGWAVVVDD VEQWRAEGGGYYECDPKVKSEICLPVLHSDDNVLGIIDAESFAAGHFTPERQVWLAALAIVLPQLLIKLPPLENGETLPN
Sequences:
>Translated_240_residues MIPASQLTDYLREQALKLDMTELQIAVMTLQAVIAVDKPAPSRDLYRYKVPKLGEGGSCSLFDELDETPYDLRLALGAET PETTAALVNLSALLDSVNAKIGADWLGIYRKIGAGKGAVLVKLAYKGMESRAEFPLTEEFAEFSNNSRVGLTGWAVVVDD VEQWRAEGGGYYECDPKVKSEICLPVLHSDDNVLGIIDAESFAAGHFTPERQVWLAALAIVLPQLLIKLPPLENGETLPN >Mature_240_residues MIPASQLTDYLREQALKLDMTELQIAVMTLQAVIAVDKPAPSRDLYRYKVPKLGEGGSCSLFDELDETPYDLRLALGAET PETTAALVNLSALLDSVNAKIGADWLGIYRKIGAGKGAVLVKLAYKGMESRAEFPLTEEFAEFSNNSRVGLTGWAVVVDD VEQWRAEGGGYYECDPKVKSEICLPVLHSDDNVLGIIDAESFAAGHFTPERQVWLAALAIVLPQLLIKLPPLENGETLPN
Specific function: Unknown
COG id: COG1956
COG function: function code T; GAF domain-containing protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26163; Mature: 26163
Theoretical pI: Translated: 4.31; Mature: 4.31
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIPASQLTDYLREQALKLDMTELQIAVMTLQAVIAVDKPAPSRDLYRYKVPKLGEGGSCS CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHEECCCCCCCCCEEEECCCCCCCCCCC LFDELDETPYDLRLALGAETPETTAALVNLSALLDSVNAKIGADWLGIYRKIGAGKGAVL HHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCEEE VKLAYKGMESRAEFPLTEEFAEFSNNSRVGLTGWAVVVDDVEQWRAEGGGYYECDPKVKS EEEEHHCCCCCCCCCHHHHHHHHCCCCCEEEEEHEEEEHHHHHHHHCCCCEEECCCCCCC EICLPVLHSDDNVLGIIDAESFAAGHFTPERQVWLAALAIVLPQLLIKLPPLENGETLPN CEEEEEEECCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC >Mature Secondary Structure MIPASQLTDYLREQALKLDMTELQIAVMTLQAVIAVDKPAPSRDLYRYKVPKLGEGGSCS CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHEECCCCCCCCCEEEECCCCCCCCCCC LFDELDETPYDLRLALGAETPETTAALVNLSALLDSVNAKIGADWLGIYRKIGAGKGAVL HHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCEEE VKLAYKGMESRAEFPLTEEFAEFSNNSRVGLTGWAVVVDDVEQWRAEGGGYYECDPKVKS EEEEHHCCCCCCCCCHHHHHHHHCCCCCEEEEEHEEEEHHHHHHHHCCCCEEECCCCCCC EICLPVLHSDDNVLGIIDAESFAAGHFTPERQVWLAALAIVLPQLLIKLPPLENGETLPN CEEEEEEECCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA