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The map label for this gene is colA [H]

Identifier: 34497456

GI number: 34497456

Start: 2180559

End: 2183030

Strand: Direct

Name: colA [H]

Synonym: CV_2001

Alternate gene names: 34497456

Gene position: 2180559-2183030 (Clockwise)

Preceding gene: 34497455

Following gene: 34497459

Centisome position: 45.9

GC content: 67.27

Gene sequence:

>2472_bases
CTGCCGCCGGCGGCGCCGGATAACGGCGGCGCGCAGCCGCCGGCCAAGCCACAGGGCCAGCAAGGCCAGATCGCCCGCAA
GGCGGCCCGGACGGATGCCGCCGCGCCGGCCTACGCCGACTGCGACGAGGCCAAGCTCGGCCAGCTGTCCGGACAGGCGC
TGGTGCGTTATGTCGCCAGCGTGGACGGCACTTGCATGAACCGCCTGTTCCAGGCGGACAGCTTCAGCTACCGCGTGGTG
TCGCCGGCCAATATGCAGCTGGTGGCGGCCGAGGCGCGCCAGCGCGCGACAGCATGGGACGGGCAGAATGCCAACGGCCT
GTGGCCGCTGGCGGTGTTCCTGAAGGCGGGTTACTTCCTGCAGTACAGCCATGCCAAGGAAGTGGGCGATTATGGCCCGG
CAGTGGATCAGCCGGTGATGCAGGTGGTGGAGGCGATGGCCGCCAATCCGGCATTGTGGAACGTCAAGGCTATCGACAGC
CGCGGCGACCGCGACGCGTGGTTCCGCGAGCGCGATGCCCGCCAGAGCGTGGCGGAAACCTTGATCCTGGCGGACTCGGT
GCGCAAGGCCGAGTACGCGCTGCCGCTGCTGAACCGCTTCTTCGGCCGCTACAACGCCGCGGTCAAGGACAATTGGGCGC
GCTTCGCGCTGCATCCGATGCAGACGCTGCTGTTCAATATGCATTACCAGCCCGAGTTCGCCCAGAAGGTGGAGAGAGGC
CAGCTCGACGGCCTGGTGGCCAGCCTGGCAGGGCTGACCCGCGCCGGCCAGCCGGCGTTCGCCGACGAGCAGATGTTCCT
CAACACCCTGCGCGAAACCGGCCGCTTCATGCAGTATCCGCGCACCGCGCCGCAAGCCGAGTCCGCAGTCGCCCAGTATC
TGAAGGGCGAGAAGTTCGGCGCGGCCTGGGCTGAGGCGGTGTACGCGCTGAAGAAGCTGGGCAAGGTGCCGTGCGAGCGC
TATGGCATCTGCCAGGCCGAGCAGGAGCTGCGCGCCAGCCTGTTCCCCAACCGCTGGAGCTTCGACAACGGCAAGCTGGT
GTTCGAAACCCCGCTGAGCCTGGCCGAGGTGGAGCCGCTGTACTACGCGATGAAGCAAGTGCAGACCCAGCTGTTCCGCG
TGGCTGGCACCAAGGAAGCAGTGGCGAACGATCCCAATGAAAAGCTGAAGATGGTGATCTACGGCACCAAGACCGCCTAC
CAGCGCTTCCAGGGCCTGCTCAACGAGCTGTCCACCGACAACGGTGGCATCTACATCGAGAAGGACGGCACCTTCTACAC
CTTCCAGCGCGAAGTGCCGCGCGAGAGTTACCTGACCCTGGAAGAACTGGTGCGCCACGAGTATGTGCATTATCTGTCCG
GACGCTACATCCAGCCGGGCATGTGGGGCACGTCCGAGTTCTATCGCGACGACCGCCGCATGCCGTGGTATGACGAGGGT
TTCGCCGAATTCATGGCCTGGAGCACCTCGCGCGACGGCATCAAGGTGCGCGGCCACGTGGTGGACGTGGTGGCCGGCGG
CTGGCCGAACAGCTTCCTGGAGCCGTCCCGCATCATGCGCTCCAGCTATAGCGACGGCTGGGACTTCTACAGCCATTCCG
CGCTGTGGTTCTACTACCTGAACCAGCAGCAGCCGGGCAAGATCGCCGACATCCTGGCCGCGCTGCGCGCAGACGACGTC
AAGCGCTTCGACGCGCTGGTGAATAGTATGGGCGGCGACGCCGCGCTGGTGTCCGGTTTCCGCCAGTACGTGGATCAGCA
GGTGCAAGCGGCCAAGTCGGGCCAGCTGGGCAATACTTCGACCGAAGAGGGCGTGGACTGGGTGGCCAAGGACAAGTGGC
AGGCCGGCGACGCTTCGGTGGTGGAAGCCGCGATGCGCCGCTCCCTGCCGGTGGGCTGCCAGGTGTGGGCCGACGGCGAA
ACCAGCGCGCTGCGCCGCTTCGAATGCGGCGGCACGCTGCCGCTGTCCGCCAGCGACAACACCCGCGCGCGCCAGGAGCT
GGACAAGCTGCTGGACGGCGCGTTGCAGAGCCTAGTGAAGACCGGAGGCGTCAACAACCTGATGGCGACCAATTGCTCGG
CCACCGACTACGACTTCAAGCGCAAGACCGCGGTGCTGCGCTGCGAGGGCCCGCTGGGCCCGGCCGGCAGCGCCAAGCCG
CAGCCGCCGCAGACCGGCGAGCTGAACTTGGCCAAGCTGAGCTACGCCGGTCCGGCGCGCTGCCTGCGCGGCCAGTTTGA
GGGCGTGGGCGGCGTCGAGCGTTACCAGTTGGTGCAGGCGCCGCAGCTGGGACGGGCGGCGGTGTCCGATTGGGGTTCGT
TCACCTATCGCCGCGATGCCGACCAGCCGGGCGTGGCCGACAAGATGACCGTCCGCCTCAGCAAGGGCGCGCAATCCCGC
GACGTGGTGGTGGAGCTGAACGCCACGCCGCGTGACATGCCGGAAGAGCAGTGCTGGGCGCAGGCGGGTTGA

Upstream 100 bases:

>100_bases
GACCGGCTCGCAGCAACCCGCGCCGCAGGCCAATCAACCCAGCGCGCGCTATTCCTCGCATTCCCCGGCGCTGTCTGAAA
AACCGGACTACCCGCACGGC

Downstream 100 bases:

>100_bases
GAGAGTGACTTGAAGTAAGTAAATGAAACGGGAAGCGTAAAGCTTCCCGTTTTGTTTTGCGATTATGGAGTGTTGCAATT
GGCGCTCTATTGCATGGCTT

Product: collagenase

Products: NA

Alternate protein names: 120 kDa collagenase [H]

Number of amino acids: Translated: 823; Mature: 822

Protein sequence:

>823_residues
MPPAAPDNGGAQPPAKPQGQQGQIARKAARTDAAAPAYADCDEAKLGQLSGQALVRYVASVDGTCMNRLFQADSFSYRVV
SPANMQLVAAEARQRATAWDGQNANGLWPLAVFLKAGYFLQYSHAKEVGDYGPAVDQPVMQVVEAMAANPALWNVKAIDS
RGDRDAWFRERDARQSVAETLILADSVRKAEYALPLLNRFFGRYNAAVKDNWARFALHPMQTLLFNMHYQPEFAQKVERG
QLDGLVASLAGLTRAGQPAFADEQMFLNTLRETGRFMQYPRTAPQAESAVAQYLKGEKFGAAWAEAVYALKKLGKVPCER
YGICQAEQELRASLFPNRWSFDNGKLVFETPLSLAEVEPLYYAMKQVQTQLFRVAGTKEAVANDPNEKLKMVIYGTKTAY
QRFQGLLNELSTDNGGIYIEKDGTFYTFQREVPRESYLTLEELVRHEYVHYLSGRYIQPGMWGTSEFYRDDRRMPWYDEG
FAEFMAWSTSRDGIKVRGHVVDVVAGGWPNSFLEPSRIMRSSYSDGWDFYSHSALWFYYLNQQQPGKIADILAALRADDV
KRFDALVNSMGGDAALVSGFRQYVDQQVQAAKSGQLGNTSTEEGVDWVAKDKWQAGDASVVEAAMRRSLPVGCQVWADGE
TSALRRFECGGTLPLSASDNTRARQELDKLLDGALQSLVKTGGVNNLMATNCSATDYDFKRKTAVLRCEGPLGPAGSAKP
QPPQTGELNLAKLSYAGPARCLRGQFEGVGGVERYQLVQAPQLGRAAVSDWGSFTYRRDADQPGVADKMTVRLSKGAQSR
DVVVELNATPRDMPEEQCWAQAG

Sequences:

>Translated_823_residues
MPPAAPDNGGAQPPAKPQGQQGQIARKAARTDAAAPAYADCDEAKLGQLSGQALVRYVASVDGTCMNRLFQADSFSYRVV
SPANMQLVAAEARQRATAWDGQNANGLWPLAVFLKAGYFLQYSHAKEVGDYGPAVDQPVMQVVEAMAANPALWNVKAIDS
RGDRDAWFRERDARQSVAETLILADSVRKAEYALPLLNRFFGRYNAAVKDNWARFALHPMQTLLFNMHYQPEFAQKVERG
QLDGLVASLAGLTRAGQPAFADEQMFLNTLRETGRFMQYPRTAPQAESAVAQYLKGEKFGAAWAEAVYALKKLGKVPCER
YGICQAEQELRASLFPNRWSFDNGKLVFETPLSLAEVEPLYYAMKQVQTQLFRVAGTKEAVANDPNEKLKMVIYGTKTAY
QRFQGLLNELSTDNGGIYIEKDGTFYTFQREVPRESYLTLEELVRHEYVHYLSGRYIQPGMWGTSEFYRDDRRMPWYDEG
FAEFMAWSTSRDGIKVRGHVVDVVAGGWPNSFLEPSRIMRSSYSDGWDFYSHSALWFYYLNQQQPGKIADILAALRADDV
KRFDALVNSMGGDAALVSGFRQYVDQQVQAAKSGQLGNTSTEEGVDWVAKDKWQAGDASVVEAAMRRSLPVGCQVWADGE
TSALRRFECGGTLPLSASDNTRARQELDKLLDGALQSLVKTGGVNNLMATNCSATDYDFKRKTAVLRCEGPLGPAGSAKP
QPPQTGELNLAKLSYAGPARCLRGQFEGVGGVERYQLVQAPQLGRAAVSDWGSFTYRRDADQPGVADKMTVRLSKGAQSR
DVVVELNATPRDMPEEQCWAQAG
>Mature_822_residues
PPAAPDNGGAQPPAKPQGQQGQIARKAARTDAAAPAYADCDEAKLGQLSGQALVRYVASVDGTCMNRLFQADSFSYRVVS
PANMQLVAAEARQRATAWDGQNANGLWPLAVFLKAGYFLQYSHAKEVGDYGPAVDQPVMQVVEAMAANPALWNVKAIDSR
GDRDAWFRERDARQSVAETLILADSVRKAEYALPLLNRFFGRYNAAVKDNWARFALHPMQTLLFNMHYQPEFAQKVERGQ
LDGLVASLAGLTRAGQPAFADEQMFLNTLRETGRFMQYPRTAPQAESAVAQYLKGEKFGAAWAEAVYALKKLGKVPCERY
GICQAEQELRASLFPNRWSFDNGKLVFETPLSLAEVEPLYYAMKQVQTQLFRVAGTKEAVANDPNEKLKMVIYGTKTAYQ
RFQGLLNELSTDNGGIYIEKDGTFYTFQREVPRESYLTLEELVRHEYVHYLSGRYIQPGMWGTSEFYRDDRRMPWYDEGF
AEFMAWSTSRDGIKVRGHVVDVVAGGWPNSFLEPSRIMRSSYSDGWDFYSHSALWFYYLNQQQPGKIADILAALRADDVK
RFDALVNSMGGDAALVSGFRQYVDQQVQAAKSGQLGNTSTEEGVDWVAKDKWQAGDASVVEAAMRRSLPVGCQVWADGET
SALRRFECGGTLPLSASDNTRARQELDKLLDGALQSLVKTGGVNNLMATNCSATDYDFKRKTAVLRCEGPLGPAGSAKPQ
PPQTGELNLAKLSYAGPARCLRGQFEGVGGVERYQLVQAPQLGRAAVSDWGSFTYRRDADQPGVADKMTVRLSKGAQSRD
VVVELNATPRDMPEEQCWAQAG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PKD domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013510
- InterPro:   IPR007280
- InterPro:   IPR002169
- InterPro:   IPR013661
- InterPro:   IPR022409
- InterPro:   IPR000601 [H]

Pfam domain/function: PF01752 Peptidase_M9; PF08453 Peptidase_M9_N; PF00801 PKD; PF04151 PPC [H]

EC number: =3.4.24.3 [H]

Molecular weight: Translated: 91121; Mature: 90990

Theoretical pI: Translated: 6.64; Mature: 6.64

Prosite motif: PS00142 ZINC_PROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPPAAPDNGGAQPPAKPQGQQGQIARKAARTDAAAPAYADCDEAKLGQLSGQALVRYVAS
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
VDGTCMNRLFQADSFSYRVVSPANMQLVAAEARQRATAWDGQNANGLWPLAVFLKAGYFL
CCHHHHHHHHHCCCCCEEEECCCCCEEEHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCEE
QYSHAKEVGDYGPAVDQPVMQVVEAMAANPALWNVKAIDSRGDRDAWFRERDARQSVAET
EEHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHH
LILADSVRKAEYALPLLNRFFGRYNAAVKDNWARFALHPMQTLLFNMHYQPEFAQKVERG
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
QLDGLVASLAGLTRAGQPAFADEQMFLNTLRETGRFMQYPRTAPQAESAVAQYLKGEKFG
HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCH
AAWAEAVYALKKLGKVPCERYGICQAEQELRASLFPNRWSFDNGKLVFETPLSLAEVEPL
HHHHHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHCCCCCCCCCCEEEEECCCCHHHHHHH
YYAMKQVQTQLFRVAGTKEAVANDPNEKLKMVIYGTKTAYQRFQGLLNELSTDNGGIYIE
HHHHHHHHHHHHHHCCCHHHHCCCCCCCEEEEEEECHHHHHHHHHHHHHHCCCCCCEEEE
KDGTFYTFQREVPRESYLTLEELVRHEYVHYLSGRYIQPGMWGTSEFYRDDRRMPWYDEG
ECCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCHHHHHCCCCCCCHHHH
FAEFMAWSTSRDGIKVRGHVVDVVAGGWPNSFLEPSRIMRSSYSDGWDFYSHSALWFYYL
HHHHHHHCCCCCCEEEEEEEEEEEECCCCCCCCCHHHHHHHCCCCCCCHHCCCEEEEEEE
NQQQPGKIADILAALRADDVKRFDALVNSMGGDAALVSGFRQYVDQQVQAAKSGQLGNTS
CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC
TEEGVDWVAKDKWQAGDASVVEAAMRRSLPVGCQVWADGETSALRRFECGGTLPLSASDN
CHHCCCHHHCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCHHHHHHHCCCCCCCCCCCCC
TRARQELDKLLDGALQSLVKTGGVNNLMATNCSATDYDFKRKTAVLRCEGPLGPAGSAKP
HHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCHHHCEEEEEECCCCCCCCCCCC
QPPQTGELNLAKLSYAGPARCLRGQFEGVGGVERYQLVQAPQLGRAAVSDWGSFTYRRDA
CCCCCCCEEEEEECCCCHHHHHHCCCCCCCCHHHHHHHCCCCCCHHHHHHHHCCCCCCCC
DQPGVADKMTVRLSKGAQSRDVVVELNATPRDMPEEQCWAQAG
CCCCCCCCEEEEECCCCCCCCEEEEECCCCCCCCHHHHHHCCC
>Mature Secondary Structure 
PPAAPDNGGAQPPAKPQGQQGQIARKAARTDAAAPAYADCDEAKLGQLSGQALVRYVAS
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
VDGTCMNRLFQADSFSYRVVSPANMQLVAAEARQRATAWDGQNANGLWPLAVFLKAGYFL
CCHHHHHHHHHCCCCCEEEECCCCCEEEHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCEE
QYSHAKEVGDYGPAVDQPVMQVVEAMAANPALWNVKAIDSRGDRDAWFRERDARQSVAET
EEHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHH
LILADSVRKAEYALPLLNRFFGRYNAAVKDNWARFALHPMQTLLFNMHYQPEFAQKVERG
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
QLDGLVASLAGLTRAGQPAFADEQMFLNTLRETGRFMQYPRTAPQAESAVAQYLKGEKFG
HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCH
AAWAEAVYALKKLGKVPCERYGICQAEQELRASLFPNRWSFDNGKLVFETPLSLAEVEPL
HHHHHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHCCCCCCCCCCEEEEECCCCHHHHHHH
YYAMKQVQTQLFRVAGTKEAVANDPNEKLKMVIYGTKTAYQRFQGLLNELSTDNGGIYIE
HHHHHHHHHHHHHHCCCHHHHCCCCCCCEEEEEEECHHHHHHHHHHHHHHCCCCCCEEEE
KDGTFYTFQREVPRESYLTLEELVRHEYVHYLSGRYIQPGMWGTSEFYRDDRRMPWYDEG
ECCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCHHHHHCCCCCCCHHHH
FAEFMAWSTSRDGIKVRGHVVDVVAGGWPNSFLEPSRIMRSSYSDGWDFYSHSALWFYYL
HHHHHHHCCCCCCEEEEEEEEEEEECCCCCCCCCHHHHHHHCCCCCCCHHCCCEEEEEEE
NQQQPGKIADILAALRADDVKRFDALVNSMGGDAALVSGFRQYVDQQVQAAKSGQLGNTS
CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC
TEEGVDWVAKDKWQAGDASVVEAAMRRSLPVGCQVWADGETSALRRFECGGTLPLSASDN
CHHCCCHHHCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCHHHHHHHCCCCCCCCCCCCC
TRARQELDKLLDGALQSLVKTGGVNNLMATNCSATDYDFKRKTAVLRCEGPLGPAGSAKP
HHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCHHHCEEEEEECCCCCCCCCCCC
QPPQTGELNLAKLSYAGPARCLRGQFEGVGGVERYQLVQAPQLGRAAVSDWGSFTYRRDA
CCCCCCCEEEEEECCCCHHHHHHCCCCCCCCHHHHHHHCCCCCCHHHHHHHHCCCCCCCC
DQPGVADKMTVRLSKGAQSRDVVVELNATPRDMPEEQCWAQAG
CCCCCCCCEEEEECCCCCCCCEEEEECCCCCCCCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8282691; 11792842 [H]