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The map label for this gene is potD [C]

Identifier: 34497310

GI number: 34497310

Start: 2010932

End: 2011954

Strand: Direct

Name: potD [C]

Synonym: CV_1855

Alternate gene names: 34497310

Gene position: 2010932-2011954 (Clockwise)

Preceding gene: 34497308

Following gene: 34497311

Centisome position: 42.33

GC content: 63.34

Gene sequence:

>1023_bases
ATGAAAAAACAGATGGCTGTCGCGGCCGCCCTGGCCGTGTCCGGGCTGCTGTCCCCGCTGGCGCAAGCCAAGACCACGCT
GACCGTCTACACCGCGCTGGAGGCGGATCAGGTGAAGGATTACAAGGAAGCGTTCGAGAAGGCCAATCCGGACATCGACA
TCCGCTGGGTGCGTGAATCCACCGGCGTGATCACCGCGCGGCTGCTGTCGGAGAAAAACCATCCCCAGGCCGACGCCGTG
TGGGGCCTGGCCGCCACCAGCCTGATGATCCTGGACCAGCAAGGCATGCTGCAGGCCTATGCGCCCAAGGGCGTGGAGAA
GCTGAGCCCGCAGTTCGTCGACAAGGCCAGGCCGCCGAAATGGACCGGCATGGACGTATGGGCCGCCGCCATCTGTTTCA
ACACCGTGGAAGCGGCGAAAAAGAATCTGCCCAAGCCGGAGAGCTGGGCCGACCTGACCAAGCCGGTCTACAAGGGCCAG
ATCGTGATGCCGCACCCGGCTTCGTCCGGCACCGGCTACCTGGATGTATCCGCCTGGCTGCAGACCCTGGGCGAGAAGAA
GGGCTGGGACTACATGGACAAGCTGCACGCCAATATGGCGCAGTACGTCCATTCCGGCTCCAAACCGTGCAAGATGGCCG
CCGCCGGCGAGTATCCGATCGGCATCTCGTTTGAATACCGCGGCGCGCAGTTGAAGGAGAAGGGCGCGCCGATCGACCTG
ATCTATCCGAAGGAAGGCCTGGGCTGGGATCTGGAGGCCACCGCCATCATCAAGGGCACCAAGAACCTGGAAGCCGCCAG
GAAGCTGGCCGACTTCTCGGTGAGCCTGCCGGCGATGAAGCTGTACGAGCAGAACTACGCGGTGCTGGCGATGCCGGGCG
TGGCCAAACAGAACCCCTATATCCCGGTCGACTACTCGCAGCGGCTGTCCAAGAACAACTTCGGCTGGGCCGCCAAGAAC
CGCGACGCCATCCTGAAGGAATGGTCGCGCCGCTATGAAAGCAAGGCCGCGCCGAAAGAGTGA

Upstream 100 bases:

>100_bases
CGCGGTGTCATCGCACGCATCTATCGTGGCGCTGATTCGTTCCGATCCGTCCGATGCGCAAATGTATTTGTCTATACGTC
TAAATCAAGGAGCATAGTCG

Downstream 100 bases:

>100_bases
ACGATCGCCCCGCAGCCGCCCCCCACGCCGGGGGCGGCTTGTTTCACGCATAGTCTCAGGTCACGGGAGCACCCGATGAA
ACCGGTCGATAGCCTGTCCG

Product: iron ABC transporter substrate-binding protein

Products: phosphate; putrescine [Cytoplasm]; ADP; spermidine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 340; Mature: 340

Protein sequence:

>340_residues
MKKQMAVAAALAVSGLLSPLAQAKTTLTVYTALEADQVKDYKEAFEKANPDIDIRWVRESTGVITARLLSEKNHPQADAV
WGLAATSLMILDQQGMLQAYAPKGVEKLSPQFVDKARPPKWTGMDVWAAAICFNTVEAAKKNLPKPESWADLTKPVYKGQ
IVMPHPASSGTGYLDVSAWLQTLGEKKGWDYMDKLHANMAQYVHSGSKPCKMAAAGEYPIGISFEYRGAQLKEKGAPIDL
IYPKEGLGWDLEATAIIKGTKNLEAARKLADFSVSLPAMKLYEQNYAVLAMPGVAKQNPYIPVDYSQRLSKNNFGWAAKN
RDAILKEWSRRYESKAAPKE

Sequences:

>Translated_340_residues
MKKQMAVAAALAVSGLLSPLAQAKTTLTVYTALEADQVKDYKEAFEKANPDIDIRWVRESTGVITARLLSEKNHPQADAV
WGLAATSLMILDQQGMLQAYAPKGVEKLSPQFVDKARPPKWTGMDVWAAAICFNTVEAAKKNLPKPESWADLTKPVYKGQ
IVMPHPASSGTGYLDVSAWLQTLGEKKGWDYMDKLHANMAQYVHSGSKPCKMAAAGEYPIGISFEYRGAQLKEKGAPIDL
IYPKEGLGWDLEATAIIKGTKNLEAARKLADFSVSLPAMKLYEQNYAVLAMPGVAKQNPYIPVDYSQRLSKNNFGWAAKN
RDAILKEWSRRYESKAAPKE
>Mature_340_residues
MKKQMAVAAALAVSGLLSPLAQAKTTLTVYTALEADQVKDYKEAFEKANPDIDIRWVRESTGVITARLLSEKNHPQADAV
WGLAATSLMILDQQGMLQAYAPKGVEKLSPQFVDKARPPKWTGMDVWAAAICFNTVEAAKKNLPKPESWADLTKPVYKGQ
IVMPHPASSGTGYLDVSAWLQTLGEKKGWDYMDKLHANMAQYVHSGSKPCKMAAAGEYPIGISFEYRGAQLKEKGAPIDL
IYPKEGLGWDLEATAIIKGTKNLEAARKLADFSVSLPAMKLYEQNYAVLAMPGVAKQNPYIPVDYSQRLSKNNFGWAAKN
RDAILKEWSRRYESKAAPKE

Specific function: Required For The Activity Of The Bacterial Periplasmic Transport System Of Putrescine And Spermidine. Polyamine Binding Protein. [C]

COG id: COG1840

COG function: function code P; ABC-type Fe3+ transport system, periplasmic component

Gene ontology:

Cell location: Periplasmic Protein [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 1040 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 260 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 460 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 380 Molecules/Cell In: Stationary Phase,

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 37497; Mature: 37497

Theoretical pI: Translated: 9.56; Mature: 9.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKQMAVAAALAVSGLLSPLAQAKTTLTVYTALEADQVKDYKEAFEKANPDIDIRWVRES
CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCHHHHHHHHHHHHHCCCCEEEEEEECC
TGVITARLLSEKNHPQADAVWGLAATSLMILDQQGMLQAYAPKGVEKLSPQFVDKARPPK
CCEEEHHHHCCCCCCCHHHHHHHHHHHEEEECCCCCHHHHCCCCHHHCCHHHHHCCCCCC
WTGMDVWAAAICFNTVEAAKKNLPKPESWADLTKPVYKGQIVMPHPASSGTGYLDVSAWL
CCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCEEEECCCCCCCCCEEEHHHHH
QTLGEKKGWDYMDKLHANMAQYVHSGSKPCKMAAAGEYPIGISFEYRGAQLKEKGAPIDL
HHHCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCCEEEEEEECCCHHHHCCCCEEE
IYPKEGLGWDLEATAIIKGTKNLEAARKLADFSVSLPAMKLYEQNYAVLAMPGVAKQNPY
EECCCCCCCCCEEEEEEECCCHHHHHHHHHHCCCCCCHHHHHHCCCEEEEECCCCCCCCC
IPVDYSQRLSKNNFGWAAKNRDAILKEWSRRYESKAAPKE
CCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MKKQMAVAAALAVSGLLSPLAQAKTTLTVYTALEADQVKDYKEAFEKANPDIDIRWVRES
CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCHHHHHHHHHHHHHCCCCEEEEEEECC
TGVITARLLSEKNHPQADAVWGLAATSLMILDQQGMLQAYAPKGVEKLSPQFVDKARPPK
CCEEEHHHHCCCCCCCHHHHHHHHHHHEEEECCCCCHHHHCCCCHHHCCHHHHHCCCCCC
WTGMDVWAAAICFNTVEAAKKNLPKPESWADLTKPVYKGQIVMPHPASSGTGYLDVSAWL
CCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCEEEECCCCCCCCCEEEHHHHH
QTLGEKKGWDYMDKLHANMAQYVHSGSKPCKMAAAGEYPIGISFEYRGAQLKEKGAPIDL
HHHCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCCEEEEEEECCCHHHHCCCCEEE
IYPKEGLGWDLEATAIIKGTKNLEAARKLADFSVSLPAMKLYEQNYAVLAMPGVAKQNPY
EECCCCCCCCCEEEEEEECCCHHHHHHHHHHCCCCCCHHHHHHCCCEEEEECCCCCCCCC
IPVDYSQRLSKNNFGWAAKNRDAILKEWSRRYESKAAPKE
CCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: putrescine [Periplasm]; H2O; ATP; spermidine [Periplasm] [C]

Specific reaction: ATP + putrescine [Periplasm] + H2O = ADP + phosphate + putrescine [Cytoplasm] ATP + spermidine [Periplasm] + H2O = ADP + phosphate + spermidine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 10675023 [H]