| Definition | Chromobacterium violaceum ATCC 12472 chromosome, complete genome. |
|---|---|
| Accession | NC_005085 |
| Length | 4,751,080 |
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The map label for this gene is phnK [H]
Identifier: 34497297
GI number: 34497297
Start: 1997260
End: 1998033
Strand: Reverse
Name: phnK [H]
Synonym: CV_1842
Alternate gene names: 34497297
Gene position: 1998033-1997260 (Counterclockwise)
Preceding gene: 34497298
Following gene: 34497296
Centisome position: 42.05
GC content: 70.54
Gene sequence:
>774_bases ATGATGGCGCCCATCCTCACCGTGAGCGGGCTGAGCAAGGACTACGGCAACGGCCAGGGCTGCTTCGACGTCAATTTCCA GCTGTATCCGGGCGAGGTGCTGTGCATCGTCGGCGAATCCGGCTCCGGCAAATCCACGCTCTTGTCCACCCTGGCCGGCC GCCTGGCCGCCGACGCCGGCAGCGCGCGCTTCGCCGACCGCGACGGCGCCACGCATGAGCTAACCTGCCTGCCGGAGGCC GAGCGCCGCCGGCTGGCGCGCAGCGAATGGGGCTTCGTCACCCAGCACGCCCGCGACGGCCTGCGCATGGGCGTCTCCGC CGGCGCCAACGTCAGCGAACGGCTGATGGCGCTGGGCCAGCGCCATTACGGCCGGCTGCGGCAGACCGCCGGCGATTGGC TGGAAAAAGTGGAGATAGACCGCGCGCGGCTGGACGACAAGCCGTCCGCCTTCTCCGGCGGCATGCAGCAGCGGCTGCAG ATCGCCCGCAATCTGGTGACGCAGCCGCGGCTGGTGTTCATGGACGAGCCCACCGGCGGCCTGGACGTGTCGGTGCAGGC GCGCTTCCTGGACCTGACCCGCCGCCTGGTGCGCGACGCCGGCATCGCCGTCATCATGGTGACGCACGATCTGGGCGTGG CGCGGCTGCTGGCGCAGCGCACGCTGGTGATGCAGCAGGGGCGCGTGGTGGAGGCCGGCCTCACCGACCAGATCCTCGAC GACCCGCAGCACCCGTACAGCCAGTTGCTGGTGTCTTCCATCCTGCAGGCCTGA
Upstream 100 bases:
>100_bases GTTCGCACGACAGCTATCTGGACGAAATCGTCATCGACGACGCCGGCAGCCGGATGTTTGTCTGCTCGGACACCGACTAC TGCCAGCGGGAGAAACAAGC
Downstream 100 bases:
>100_bases AATCATGAATCTATTGATAGACGCGCAAAATCTGAGCAAGACCTTCACCCTGCATCAACAGGGCGGGCTGCGGCTGCCGG TGCTGACCGAGGTCTCGCTG
Product: phosphonate C-P lyase system protein PhnK
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 257; Mature: 257
Protein sequence:
>257_residues MMAPILTVSGLSKDYGNGQGCFDVNFQLYPGEVLCIVGESGSGKSTLLSTLAGRLAADAGSARFADRDGATHELTCLPEA ERRRLARSEWGFVTQHARDGLRMGVSAGANVSERLMALGQRHYGRLRQTAGDWLEKVEIDRARLDDKPSAFSGGMQQRLQ IARNLVTQPRLVFMDEPTGGLDVSVQARFLDLTRRLVRDAGIAVIMVTHDLGVARLLAQRTLVMQQGRVVEAGLTDQILD DPQHPYSQLLVSSILQA
Sequences:
>Translated_257_residues MMAPILTVSGLSKDYGNGQGCFDVNFQLYPGEVLCIVGESGSGKSTLLSTLAGRLAADAGSARFADRDGATHELTCLPEA ERRRLARSEWGFVTQHARDGLRMGVSAGANVSERLMALGQRHYGRLRQTAGDWLEKVEIDRARLDDKPSAFSGGMQQRLQ IARNLVTQPRLVFMDEPTGGLDVSVQARFLDLTRRLVRDAGIAVIMVTHDLGVARLLAQRTLVMQQGRVVEAGLTDQILD DPQHPYSQLLVSSILQA >Mature_257_residues MMAPILTVSGLSKDYGNGQGCFDVNFQLYPGEVLCIVGESGSGKSTLLSTLAGRLAADAGSARFADRDGATHELTCLPEA ERRRLARSEWGFVTQHARDGLRMGVSAGANVSERLMALGQRHYGRLRQTAGDWLEKVEIDRARLDDKPSAFSGGMQQRLQ IARNLVTQPRLVFMDEPTGGLDVSVQARFLDLTRRLVRDAGIAVIMVTHDLGVARLLAQRTLVMQQGRVVEAGLTDQILD DPQHPYSQLLVSSILQA
Specific function: Part of the binding-protein-dependent transport system for alkylphosphonates. Probably responsible for energy coupling to the transport system [H]
COG id: COG4107
COG function: function code P; ABC-type phosphonate transport system, ATPase component
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI21536376, Length=233, Percent_Identity=26.6094420600858, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI105990541, Length=213, Percent_Identity=28.169014084507, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI47078218, Length=231, Percent_Identity=25.974025974026, Blast_Score=71, Evalue=9e-13, Organism=Homo sapiens, GI45446740, Length=231, Percent_Identity=25.974025974026, Blast_Score=71, Evalue=9e-13, Organism=Homo sapiens, GI156105685, Length=222, Percent_Identity=29.2792792792793, Blast_Score=69, Evalue=5e-12, Organism=Escherichia coli, GI48994997, Length=256, Percent_Identity=63.671875, Blast_Score=327, Evalue=4e-91, Organism=Escherichia coli, GI48994883, Length=249, Percent_Identity=36.9477911646586, Blast_Score=140, Evalue=7e-35, Organism=Escherichia coli, GI1789962, Length=263, Percent_Identity=33.8403041825095, Blast_Score=137, Evalue=1e-33, Organism=Escherichia coli, GI1789963, Length=257, Percent_Identity=33.852140077821, Blast_Score=130, Evalue=1e-31, Organism=Escherichia coli, GI1787500, Length=232, Percent_Identity=33.1896551724138, Blast_Score=129, Evalue=2e-31, Organism=Escherichia coli, GI145693107, Length=266, Percent_Identity=34.5864661654135, Blast_Score=127, Evalue=5e-31, Organism=Escherichia coli, GI1787758, Length=231, Percent_Identity=34.6320346320346, Blast_Score=119, Evalue=2e-28, Organism=Escherichia coli, GI1788506, Length=266, Percent_Identity=34.2105263157895, Blast_Score=117, Evalue=5e-28, Organism=Escherichia coli, GI87081834, Length=234, Percent_Identity=35.4700854700855, Blast_Score=106, Evalue=1e-24, Organism=Escherichia coli, GI1787759, Length=265, Percent_Identity=29.811320754717, Blast_Score=104, Evalue=7e-24, Organism=Escherichia coli, GI87081791, Length=260, Percent_Identity=29.6153846153846, Blast_Score=103, Evalue=1e-23, Organism=Escherichia coli, GI1788225, Length=252, Percent_Identity=31.3492063492063, Blast_Score=102, Evalue=2e-23, Organism=Escherichia coli, GI1787089, Length=232, Percent_Identity=31.8965517241379, Blast_Score=102, Evalue=3e-23, Organism=Escherichia coli, GI1788761, Length=241, Percent_Identity=29.8755186721992, Blast_Score=101, Evalue=4e-23, Organism=Escherichia coli, GI1786872, Length=254, Percent_Identity=32.2834645669291, Blast_Score=101, Evalue=5e-23, Organism=Escherichia coli, GI1787370, Length=252, Percent_Identity=27.3809523809524, Blast_Score=99, Evalue=2e-22, Organism=Escherichia coli, GI1787548, Length=268, Percent_Identity=27.6119402985075, Blast_Score=99, Evalue=4e-22, Organism=Escherichia coli, GI1787029, Length=254, Percent_Identity=28.3464566929134, Blast_Score=98, Evalue=5e-22, Organism=Escherichia coli, GI1789672, Length=259, Percent_Identity=27.7992277992278, Blast_Score=98, Evalue=6e-22, Organism=Escherichia coli, GI1789891, Length=249, Percent_Identity=30.1204819277108, Blast_Score=97, Evalue=9e-22, Organism=Escherichia coli, GI1787105, Length=233, Percent_Identity=33.9055793991416, Blast_Score=97, Evalue=1e-21, Organism=Escherichia coli, GI1789864, Length=254, Percent_Identity=26.7716535433071, Blast_Score=94, Evalue=6e-21, Organism=Escherichia coli, GI1786703, Length=214, Percent_Identity=35.5140186915888, Blast_Score=94, Evalue=1e-20, Organism=Escherichia coli, GI1786398, Length=256, Percent_Identity=26.953125, Blast_Score=93, Evalue=1e-20, Organism=Escherichia coli, GI1788450, Length=242, Percent_Identity=28.9256198347107, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI1786563, Length=232, Percent_Identity=31.0344827586207, Blast_Score=92, Evalue=3e-20, Organism=Escherichia coli, GI1787547, Length=266, Percent_Identity=28.9473684210526, Blast_Score=92, Evalue=3e-20, Organism=Escherichia coli, GI1788644, Length=259, Percent_Identity=30.5019305019305, Blast_Score=91, Evalue=6e-20, Organism=Escherichia coli, GI1790190, Length=217, Percent_Identity=29.0322580645161, Blast_Score=91, Evalue=1e-19, Organism=Escherichia coli, GI1789032, Length=246, Percent_Identity=30.0813008130081, Blast_Score=90, Evalue=2e-19, Organism=Escherichia coli, GI1787712, Length=240, Percent_Identity=30.8333333333333, Blast_Score=89, Evalue=2e-19, Organism=Escherichia coli, GI1789890, Length=234, Percent_Identity=31.1965811965812, Blast_Score=89, Evalue=4e-19, Organism=Escherichia coli, GI1790467, Length=235, Percent_Identity=30.2127659574468, Blast_Score=88, Evalue=5e-19, Organism=Escherichia coli, GI1787164, Length=227, Percent_Identity=29.5154185022026, Blast_Score=86, Evalue=2e-18, Organism=Escherichia coli, GI1789873, Length=221, Percent_Identity=33.4841628959276, Blast_Score=85, Evalue=4e-18, Organism=Escherichia coli, GI1790544, Length=248, Percent_Identity=27.4193548387097, Blast_Score=85, Evalue=4e-18, Organism=Escherichia coli, GI87082268, Length=242, Percent_Identity=28.5123966942149, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI1789593, Length=243, Percent_Identity=27.5720164609054, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI1786253, Length=211, Percent_Identity=31.2796208530806, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI1787792, Length=240, Percent_Identity=28.75, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI87081709, Length=240, Percent_Identity=26.6666666666667, Blast_Score=79, Evalue=2e-16, Organism=Escherichia coli, GI1788053, Length=208, Percent_Identity=31.7307692307692, Blast_Score=75, Evalue=4e-15, Organism=Escherichia coli, GI1786319, Length=235, Percent_Identity=25.1063829787234, Blast_Score=72, Evalue=3e-14, Organism=Escherichia coli, GI1790534, Length=190, Percent_Identity=30.5263157894737, Blast_Score=71, Evalue=7e-14, Organism=Escherichia coli, GI48995001, Length=257, Percent_Identity=25.2918287937743, Blast_Score=71, Evalue=8e-14, Organism=Escherichia coli, GI1790739, Length=241, Percent_Identity=27.3858921161826, Blast_Score=69, Evalue=2e-13, Organism=Escherichia coli, GI1789991, Length=229, Percent_Identity=26.6375545851528, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI1788897, Length=233, Percent_Identity=28.755364806867, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI48994943, Length=230, Percent_Identity=23.4782608695652, Blast_Score=69, Evalue=4e-13, Organism=Escherichia coli, GI1786803, Length=236, Percent_Identity=28.3898305084746, Blast_Score=69, Evalue=4e-13, Organism=Escherichia coli, GI1787112, Length=230, Percent_Identity=30, Blast_Score=68, Evalue=6e-13, Organism=Escherichia coli, GI1790525, Length=219, Percent_Identity=26.9406392694064, Blast_Score=68, Evalue=8e-13, Organism=Escherichia coli, GI87082267, Length=252, Percent_Identity=26.5873015873016, Blast_Score=66, Evalue=2e-12, Organism=Escherichia coli, GI1788472, Length=220, Percent_Identity=25.9090909090909, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI1788002, Length=223, Percent_Identity=26.457399103139, Blast_Score=65, Evalue=3e-12, Organism=Escherichia coli, GI1786653, Length=216, Percent_Identity=29.1666666666667, Blast_Score=65, Evalue=6e-12, Organism=Escherichia coli, GI1789751, Length=212, Percent_Identity=26.8867924528302, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1786345, Length=216, Percent_Identity=29.1666666666667, Blast_Score=63, Evalue=2e-11, Organism=Escherichia coli, GI87081782, Length=234, Percent_Identity=23.9316239316239, Blast_Score=63, Evalue=2e-11, Organism=Escherichia coli, GI1789586, Length=240, Percent_Identity=27.5, Blast_Score=62, Evalue=3e-11, Organism=Caenorhabditis elegans, GI115533608, Length=223, Percent_Identity=29.1479820627803, Blast_Score=84, Evalue=9e-17, Organism=Caenorhabditis elegans, GI71992290, Length=248, Percent_Identity=27.4193548387097, Blast_Score=78, Evalue=5e-15, Organism=Caenorhabditis elegans, GI17565938, Length=235, Percent_Identity=25.9574468085106, Blast_Score=75, Evalue=4e-14, Organism=Caenorhabditis elegans, GI71984940, Length=221, Percent_Identity=28.0542986425339, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17511077, Length=242, Percent_Identity=26.4462809917355, Blast_Score=64, Evalue=5e-11, Organism=Saccharomyces cerevisiae, GI6324985, Length=229, Percent_Identity=24.0174672489083, Blast_Score=73, Evalue=4e-14, Organism=Drosophila melanogaster, GI24666092, Length=227, Percent_Identity=25.5506607929515, Blast_Score=77, Evalue=8e-15, Organism=Drosophila melanogaster, GI28574150, Length=226, Percent_Identity=25.2212389380531, Blast_Score=71, Evalue=6e-13, Organism=Drosophila melanogaster, GI116007328, Length=226, Percent_Identity=25.2212389380531, Blast_Score=71, Evalue=6e-13, Organism=Drosophila melanogaster, GI24643674, Length=225, Percent_Identity=25.3333333333333, Blast_Score=71, Evalue=6e-13, Organism=Drosophila melanogaster, GI24641565, Length=221, Percent_Identity=28.5067873303167, Blast_Score=66, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR012700 - InterPro: IPR013563 [H]
Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]
EC number: NA
Molecular weight: Translated: 28029; Mature: 28029
Theoretical pI: Translated: 7.56; Mature: 7.56
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMAPILTVSGLSKDYGNGQGCFDVNFQLYPGEVLCIVGESGSGKSTLLSTLAGRLAADAG CCCCEEEECCCCCCCCCCCCEEEEEEEEECCEEEEEEECCCCCHHHHHHHHHHHHHHCCC SARFADRDGATHELTCLPEAERRRLARSEWGFVTQHARDGLRMGVSAGANVSERLMALGQ CCCCCCCCCCCEEEEECCHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHH RHYGRLRQTAGDWLEKVEIDRARLDDKPSAFSGGMQQRLQIARNLVTQPRLVFMDEPTGG HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCHHHHHHHHHHHHCCCEEEEEECCCCC LDVSVQARFLDLTRRLVRDAGIAVIMVTHDLGVARLLAQRTLVMQQGRVVEAGLTDQILD EEEEHHHHHHHHHHHHHHHCCEEEEEEECCHHHHHHHHHHHHHHHCCCEEECCCCHHHHC DPQHPYSQLLVSSILQA CCCCHHHHHHHHHHHCC >Mature Secondary Structure MMAPILTVSGLSKDYGNGQGCFDVNFQLYPGEVLCIVGESGSGKSTLLSTLAGRLAADAG CCCCEEEECCCCCCCCCCCCEEEEEEEEECCEEEEEEECCCCCHHHHHHHHHHHHHHCCC SARFADRDGATHELTCLPEAERRRLARSEWGFVTQHARDGLRMGVSAGANVSERLMALGQ CCCCCCCCCCCEEEEECCHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHH RHYGRLRQTAGDWLEKVEIDRARLDDKPSAFSGGMQQRLQIARNLVTQPRLVFMDEPTGG HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCHHHHHHHHHHHHCCCEEEEEECCCCC LDVSVQARFLDLTRRLVRDAGIAVIMVTHDLGVARLLAQRTLVMQQGRVVEAGLTDQILD EEEEHHHHHHHHHHHHHHHCCEEEEEEECCHHHHHHHHHHHHHHHCCCEEECCCCHHHHC DPQHPYSQLLVSSILQA CCCCHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2155230; 1840580; 7610040; 9278503 [H]