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The map label for this gene is yeaM [H]

Identifier: 34497280

GI number: 34497280

Start: 1983620

End: 1984432

Strand: Reverse

Name: yeaM [H]

Synonym: CV_1825

Alternate gene names: 34497280

Gene position: 1984432-1983620 (Counterclockwise)

Preceding gene: 34497282

Following gene: 34497276

Centisome position: 41.77

GC content: 71.46

Gene sequence:

>813_bases
ATGGCCATCATGGAATCGACCACTGACTTCAGCGAATGGCTGGAAGGCCCCGAGCTGATCGCGCTAAGCGGCGGAGATGA
AGCTGACCGCGAATACCGGTTGGGCACCCGGGAATACGACTGGCACCGGCACGCGCGCGCGCAGCTGTTCTGCGTCGGCA
ACGGGCTGATCCATGTCCAGACGCCCCGCGGCTCCTGGCTGCTGCCGCCGCACCGCGCCGGCTATGTCCCGCCGGACACG
CCGCACCGGGTGCGCGTCAGCGGCGCGCTGAGCGGCTGGAGCGTTTACCTGCTGCCCGCCCGCTGCGGCTTGCTGCCCGC
CCAGCCCTGCGTGCTGGCCATCACGCCGCTGCTGCAGGAGCTGGTGCGACGGGCGGCCTCCTGGCGGCCCGACGCGCCGC
ATGGTCCGGAGCAGCAACGCATCGCCGCCGTCATCCTCGACGAAATCCGGCTGGCGCCGCGAGAGGCGCTGCACCTGCCC
ATGCCATCCGATCCCCGGCTGCAGCGTATCGCCGGTGCGATGCTGGCCGATCCGGCCGCGGATCGTTCGGCCGACGAATG
GGCGGCGCTGGGCGCGTTGTCCGGTCGCAGCCTGCGTCGGCTGATCCAGACTGACACCGGCATGAGCTTCTCGCGCTGGC
GGCAGCAGGCGCAACTGGTCTGGGCGATGGAGCGGCTGGCCTCCGGCCGAACCGTCGCCCAAGTGTCGGACGCGCTGGGC
TACGCCTCGCCCAGCAACTTCATCGCCATGTTCCGGCGCGCGCTGGGCGCGCCGCCGGCGCAATACCTGAGCGCGCGCGG
CGGCGAGCCATAA

Upstream 100 bases:

>100_bases
CCTTCCAATGGATGCCGCGGCCGCGCCGGCCGCGTGCCAGCCATTGTCCGCGCGACCCGTCCTGGCTCAATAACGCCATC
TGGACGATAAATAGTGAATA

Downstream 100 bases:

>100_bases
AAAAGCCCGGCTTCGCCGGGCTTGTGGAATGATGAAAGGCCGCGCTCAGCGCTTGTCCATCATGATCTGCAGGATCTGGG
TGTCGGTCTGCGCCATGCCC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 270; Mature: 269

Protein sequence:

>270_residues
MAIMESTTDFSEWLEGPELIALSGGDEADREYRLGTREYDWHRHARAQLFCVGNGLIHVQTPRGSWLLPPHRAGYVPPDT
PHRVRVSGALSGWSVYLLPARCGLLPAQPCVLAITPLLQELVRRAASWRPDAPHGPEQQRIAAVILDEIRLAPREALHLP
MPSDPRLQRIAGAMLADPAADRSADEWAALGALSGRSLRRLIQTDTGMSFSRWRQQAQLVWAMERLASGRTVAQVSDALG
YASPSNFIAMFRRALGAPPAQYLSARGGEP

Sequences:

>Translated_270_residues
MAIMESTTDFSEWLEGPELIALSGGDEADREYRLGTREYDWHRHARAQLFCVGNGLIHVQTPRGSWLLPPHRAGYVPPDT
PHRVRVSGALSGWSVYLLPARCGLLPAQPCVLAITPLLQELVRRAASWRPDAPHGPEQQRIAAVILDEIRLAPREALHLP
MPSDPRLQRIAGAMLADPAADRSADEWAALGALSGRSLRRLIQTDTGMSFSRWRQQAQLVWAMERLASGRTVAQVSDALG
YASPSNFIAMFRRALGAPPAQYLSARGGEP
>Mature_269_residues
AIMESTTDFSEWLEGPELIALSGGDEADREYRLGTREYDWHRHARAQLFCVGNGLIHVQTPRGSWLLPPHRAGYVPPDTP
HRVRVSGALSGWSVYLLPARCGLLPAQPCVLAITPLLQELVRRAASWRPDAPHGPEQQRIAAVILDEIRLAPREALHLPM
PSDPRLQRIAGAMLADPAADRSADEWAALGALSGRSLRRLIQTDTGMSFSRWRQQAQLVWAMERLASGRTVAQVSDALGY
ASPSNFIAMFRRALGAPPAQYLSARGGEP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788091, Length=223, Percent_Identity=33.1838565022422, Blast_Score=128, Evalue=4e-31,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding [H]

EC number: NA

Molecular weight: Translated: 29706; Mature: 29575

Theoretical pI: Translated: 8.49; Mature: 8.49

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIMESTTDFSEWLEGPELIALSGGDEADREYRLGTREYDWHRHARAQLFCVGNGLIHVQ
CCCCCCCCCHHHHCCCCCEEEECCCCCCCHHHCCCCCCCCHHHCCCEEEEEEECCEEEEE
TPRGSWLLPPHRAGYVPPDTPHRVRVSGALSGWSVYLLPARCGLLPAQPCVLAITPLLQE
CCCCCEECCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCCCCCCHHHHHHHHHHHH
LVRRAASWRPDAPHGPEQQRIAAVILDEIRLAPREALHLPMPSDPRLQRIAGAMLADPAA
HHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHEECCCCCCHHHHHHHHHHHCCCCC
DRSADEWAALGALSGRSLRRLIQTDTGMSFSRWRQQAQLVWAMERLASGRTVAQVSDALG
CCCHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHC
YASPSNFIAMFRRALGAPPAQYLSARGGEP
CCCCHHHHHHHHHHHCCCHHHHHHCCCCCC
>Mature Secondary Structure 
AIMESTTDFSEWLEGPELIALSGGDEADREYRLGTREYDWHRHARAQLFCVGNGLIHVQ
CCCCCCCCHHHHCCCCCEEEECCCCCCCHHHCCCCCCCCHHHCCCEEEEEEECCEEEEE
TPRGSWLLPPHRAGYVPPDTPHRVRVSGALSGWSVYLLPARCGLLPAQPCVLAITPLLQE
CCCCCEECCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCCCCCCHHHHHHHHHHHH
LVRRAASWRPDAPHGPEQQRIAAVILDEIRLAPREALHLPMPSDPRLQRIAGAMLADPAA
HHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHEECCCCCCHHHHHHHHHHHCCCCC
DRSADEWAALGALSGRSLRRLIQTDTGMSFSRWRQQAQLVWAMERLASGRTVAQVSDALG
CCCHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHC
YASPSNFIAMFRRALGAPPAQYLSARGGEP
CCCCHHHHHHHHHHHCCCHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]