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The map label for this gene is slyA [H]

Identifier: 34497265

GI number: 34497265

Start: 1968771

End: 1969223

Strand: Reverse

Name: slyA [H]

Synonym: CV_1810

Alternate gene names: 34497265

Gene position: 1969223-1968771 (Counterclockwise)

Preceding gene: 34497266

Following gene: 34497258

Centisome position: 41.45

GC content: 64.24

Gene sequence:

>453_bases
TTGTCCATCAGCCTGCTCTCTGTCGCCAACGACAGTTTCTGCCTGCGATTGCAGCGCGCCGCCCGCCTATGGCGCCAAGT
CGCCGATGAAGAGCTGAAGAAGTACGGCCTGTCCGAAGCTACCACGACGCCGCTATGGCTGATTGGCCGGCTGGGAGAAG
GACTGCGCCAGCGCGCGCTCGCCGAACATCTCGGCATCGAGGGCCAGTCTCTCGTCAGGCTGATCGACCATTTGGAAAGT
TCCGGGCTGGTCGTGCGCCGCGACGACCCAACCGACCGCCGCGCCAAAGTGCTGATGCTGACCGAGGCAGGCAAGACAAT
GGCGGCGCAAGTCGATCAAGTCGTGCGCGACATCCGCGAACGGCTGCTGCAGGATGTCAGCGCCGAGGCGCTGCACATCA
CGGATCTGACGCTGGACGCCATCTCCCGGGCCGCCGACAGGATCAGGGAATGA

Upstream 100 bases:

>100_bases
ACGTTTCATCGCAGAGCCGATGTTGGCGTATCATATGGCATGATCTGCCGCGATACGCCAACCCGGTTCGCGAAAGCGCC
ACCGCCAACGGGAGAAATTC

Downstream 100 bases:

>100_bases
AAAATCCCGCGGCGCGCGCGGGATGCCCACTCGATGGCCCATCAAGCGGCGCTTAGTCGCACAGCAGGCCCAGCACGCTG
CTGAACGGGCTATCCTGTTC

Product: MarR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 150; Mature: 149

Protein sequence:

>150_residues
MSISLLSVANDSFCLRLQRAARLWRQVADEELKKYGLSEATTTPLWLIGRLGEGLRQRALAEHLGIEGQSLVRLIDHLES
SGLVVRRDDPTDRRAKVLMLTEAGKTMAAQVDQVVRDIRERLLQDVSAEALHITDLTLDAISRAADRIRE

Sequences:

>Translated_150_residues
MSISLLSVANDSFCLRLQRAARLWRQVADEELKKYGLSEATTTPLWLIGRLGEGLRQRALAEHLGIEGQSLVRLIDHLES
SGLVVRRDDPTDRRAKVLMLTEAGKTMAAQVDQVVRDIRERLLQDVSAEALHITDLTLDAISRAADRIRE
>Mature_149_residues
SISLLSVANDSFCLRLQRAARLWRQVADEELKKYGLSEATTTPLWLIGRLGEGLRQRALAEHLGIEGQSLVRLIDHLESS
GLVVRRDDPTDRRAKVLMLTEAGKTMAAQVDQVVRDIRERLLQDVSAEALHITDLTLDAISRAADRIRE

Specific function: Transcription regulator that specifically activates or represses expression of target genes [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH marR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081950, Length=115, Percent_Identity=37.3913043478261, Blast_Score=71, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000835
- InterPro:   IPR023071
- InterPro:   IPR023187
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01047 MarR [H]

EC number: NA

Molecular weight: Translated: 16826; Mature: 16694

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: PS01117 HTH_MARR_1 ; PS50995 HTH_MARR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSISLLSVANDSFCLRLQRAARLWRQVADEELKKYGLSEATTTPLWLIGRLGEGLRQRAL
CCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH
AEHLGIEGQSLVRLIDHLESSGLVVRRDDPTDRRAKVLMLTEAGKTMAAQVDQVVRDIRE
HHHHCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHEEEEEECCCHHHHHHHHHHHHHHHH
RLLQDVSAEALHITDLTLDAISRAADRIRE
HHHHHHCCCHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SISLLSVANDSFCLRLQRAARLWRQVADEELKKYGLSEATTTPLWLIGRLGEGLRQRAL
CCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH
AEHLGIEGQSLVRLIDHLESSGLVVRRDDPTDRRAKVLMLTEAGKTMAAQVDQVVRDIRE
HHHHCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHEEEEEECCCHHHHHHHHHHHHHHHH
RLLQDVSAEALHITDLTLDAISRAADRIRE
HHHHHHCCCHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12886019 [H]