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The map label for this gene is omlA [H]

Identifier: 34497251

GI number: 34497251

Start: 1951862

End: 1952245

Strand: Reverse

Name: omlA [H]

Synonym: CV_1796

Alternate gene names: 34497251

Gene position: 1952245-1951862 (Counterclockwise)

Preceding gene: 34497255

Following gene: 34497250

Centisome position: 41.09

GC content: 66.41

Gene sequence:

>384_bases
ATGCGCGCCCTGATTTTCGCCGCCGTCATCGCAGTCGCCGGCTGCAGCTCGATGAACCCGCTCGACTGGAGCCACCGCGT
GGAAGTCCAGCAAGGCAATTACGTGACCCAGGACGCCGTCGCCAAGCTCAAGCCCGGCATGACCCGCGCCCAGGTCCGCT
TCCTGCTCGGCACCCCGCTGCTGACCGACCCCTTCCATGCCGACCGCTGGGACTACAAGTATAGCGACGCCAAAGGCGGC
AAGGTGGATCCATCCACCGACAAGCTGCTGACCATCCACTTCAAGGGCGACGCGCTGGACCGCGTCGAAGGCAATGCCCA
ACCGGCGCCGCCCGCCAAGCAGCTGGACGCTTCCGCCCCCGCCCAGGAGGCGAAAAAGCCATGA

Upstream 100 bases:

>100_bases
CATCGTGATATAAAGTGTCTCGGTTTTCGAATCATGATAAAGCCTTTTGACGGCTTTGCCTAATTACAGCCTCATAAACG
TTTGAGTCAATCGGAGTACC

Downstream 100 bases:

>100_bases
GCCAGAACATCGTGATCGTCGGCGCGTCCGGCCGCATGGGCCGCGTGCTGATCGAAGCGGTGCTGGACGCTCCCGGCGCC
CGGCTGCACGCGGCGATAGA

Product: outer membrane lipoprotein OmlA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 127; Mature: 127

Protein sequence:

>127_residues
MRALIFAAVIAVAGCSSMNPLDWSHRVEVQQGNYVTQDAVAKLKPGMTRAQVRFLLGTPLLTDPFHADRWDYKYSDAKGG
KVDPSTDKLLTIHFKGDALDRVEGNAQPAPPAKQLDASAPAQEAKKP

Sequences:

>Translated_127_residues
MRALIFAAVIAVAGCSSMNPLDWSHRVEVQQGNYVTQDAVAKLKPGMTRAQVRFLLGTPLLTDPFHADRWDYKYSDAKGG
KVDPSTDKLLTIHFKGDALDRVEGNAQPAPPAKQLDASAPAQEAKKP
>Mature_127_residues
MRALIFAAVIAVAGCSSMNPLDWSHRVEVQQGNYVTQDAVAKLKPGMTRAQVRFLLGTPLLTDPFHADRWDYKYSDAKGG
KVDPSTDKLLTIHFKGDALDRVEGNAQPAPPAKQLDASAPAQEAKKP

Specific function: May have a structural role in maintaining the cell envelope integrity [H]

COG id: COG2913

COG function: function code J; Small protein A (tmRNA-binding)

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the smpA/omlA family [H]

Homologues:

Organism=Escherichia coli, GI87082138, Length=104, Percent_Identity=35.5769230769231, Blast_Score=67, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007450 [H]

Pfam domain/function: PF04355 SmpA_OmlA [H]

EC number: NA

Molecular weight: Translated: 13801; Mature: 13801

Theoretical pI: Translated: 9.09; Mature: 9.09

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRALIFAAVIAVAGCSSMNPLDWSHRVEVQQGNYVTQDAVAKLKPGMTRAQVRFLLGTPL
CHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCEECHHHHHHHCCCCCHHHHHHHHCCCC
LTDPFHADRWDYKYSDAKGGKVDPSTDKLLTIHFKGDALDRVEGNAQPAPPAKQLDASAP
CCCCCCCCCCCCEECCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHCCCCCC
AQEAKKP
HHHCCCC
>Mature Secondary Structure
MRALIFAAVIAVAGCSSMNPLDWSHRVEVQQGNYVTQDAVAKLKPGMTRAQVRFLLGTPL
CHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCEECHHHHHHHCCCCCHHHHHHHHCCCC
LTDPFHADRWDYKYSDAKGGKVDPSTDKLLTIHFKGDALDRVEGNAQPAPPAKQLDASAP
CCCCCCCCCCCCEECCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHCCCCCC
AQEAKKP
HHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9973334 [H]