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The map label for this gene is ydeR [H]

Identifier: 34497255

GI number: 34497255

Start: 1954184

End: 1955338

Strand: Reverse

Name: ydeR [H]

Synonym: CV_1800

Alternate gene names: 34497255

Gene position: 1955338-1954184 (Counterclockwise)

Preceding gene: 34497256

Following gene: 34497251

Centisome position: 41.16

GC content: 65.28

Gene sequence:

>1155_bases
ATGGCCATCGCCTGCGGCTTTTCCATCGCCAACATCTATTACAACCAGCCCCTGCTGGGCCTGCTGCAGCGCGAGTGGGG
CGCATCCCCGCTGATCGGCCTGATACCCGCCATGACGCAGCTGGGGTTCGCCTTCGGCCTGATCCTGCTGGTTCCGCTCG
GCGATGCCATGGACCGCAAGCGGCTGATTCTGGCGCAGACGCTGGCGCTGATCGCCTCCCTCGCCTGCATGGCCGCCAGC
CCGACGCCGCCGTTGCTGTTGCTGGCCTCGGTCCTGGTCGGCGCCACCGCCACCATCGCTCAGCAAATCATTCCGTTCGC
CGCGGAGCTTGCCGGACCGGAACAGCGCGGCAAGGTGGTCGGCCATGTGATGAGCGGCCTGCTAAGCGGCATTCTGCTGG
CGCGCACGCTGAGCGGCTTCGCCGGCGCCTATCTGGGCTGGCGGGCGATGTTCATGGTGGGCGCGGCGCTGGCGATCGCC
ATGGGCTTGATGCTGCTGGCCTTTCTGCCGAGCAGCAAACCGACGGCGCAGCACGGCTATCCGGCACTGCTCGCCTCCCT
GTTCAAGCTGGCTCGAGAGGAAAGGGAACTGCGCTACGCCATCCTGACCCAGGGCATGCTATTCGCCGCGTTCAGCGCCT
TTTGGAGCACCTTGGTCTTGCTGCTGCAACAACCGGAGTTCCATATGGGCAGCCGCGAGGCGGGCCTGTTTGGCATCATC
GGCTTGGTCGGCGTCCTGCTTGCGCCACAGGCTGGCAAGCTTGCAGACGCGCGCGGACCTCACGGCATCGTCAAGCTGGG
GATCGCGCTGGTTGTCGCGTCGTTTCTGGTCTTCGGCGTGGCGCCGAACCTGATGGGACTGGTCGTCGGCGTGATTCTTC
TGGACGCGGGCGTGCAAGTCGCCATGGTCTCGCACCAGACCATCATTTTCGCGCTGAACCCCGCGGCCCGCAGCCGCATC
AACACCGTCTACATGACCGGATTATTTGTGGCGGGCGCGCTGGGTTCGGCCATAGGGGGATTCTGCTGGCAAATGCTGAA
TTGGAACGGCGTAGCCGCCGCGGGATTCGCGCTAGGCGTGCTCTCGACGTTTTTCCATCTGGGAATGGGCAGCCCGCAGC
CTAGCCGTCAAACCGGCGGCCAAGGAGGCATCTAG

Upstream 100 bases:

>100_bases
TGCGCCCGAGCCGGCAGGCCGGGCGCATCCCGCCCTTCACGCACCAGGCAATCACGAGAACAAAATGAGCAAGGCACTCC
CCTTCAGGCTGATATTGGTC

Downstream 100 bases:

>100_bases
CCTTCCGGCATCGTCTGCCAGCGGCCGCCATGCAGCATCTGCAGCGGCCGATAACCGGACTTGTACGCCATCTTGCGGCA
GTCTGCTATCCAGTAGCCCA

Product: permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 384; Mature: 383

Protein sequence:

>384_residues
MAIACGFSIANIYYNQPLLGLLQREWGASPLIGLIPAMTQLGFAFGLILLVPLGDAMDRKRLILAQTLALIASLACMAAS
PTPPLLLLASVLVGATATIAQQIIPFAAELAGPEQRGKVVGHVMSGLLSGILLARTLSGFAGAYLGWRAMFMVGAALAIA
MGLMLLAFLPSSKPTAQHGYPALLASLFKLAREERELRYAILTQGMLFAAFSAFWSTLVLLLQQPEFHMGSREAGLFGII
GLVGVLLAPQAGKLADARGPHGIVKLGIALVVASFLVFGVAPNLMGLVVGVILLDAGVQVAMVSHQTIIFALNPAARSRI
NTVYMTGLFVAGALGSAIGGFCWQMLNWNGVAAAGFALGVLSTFFHLGMGSPQPSRQTGGQGGI

Sequences:

>Translated_384_residues
MAIACGFSIANIYYNQPLLGLLQREWGASPLIGLIPAMTQLGFAFGLILLVPLGDAMDRKRLILAQTLALIASLACMAAS
PTPPLLLLASVLVGATATIAQQIIPFAAELAGPEQRGKVVGHVMSGLLSGILLARTLSGFAGAYLGWRAMFMVGAALAIA
MGLMLLAFLPSSKPTAQHGYPALLASLFKLAREERELRYAILTQGMLFAAFSAFWSTLVLLLQQPEFHMGSREAGLFGII
GLVGVLLAPQAGKLADARGPHGIVKLGIALVVASFLVFGVAPNLMGLVVGVILLDAGVQVAMVSHQTIIFALNPAARSRI
NTVYMTGLFVAGALGSAIGGFCWQMLNWNGVAAAGFALGVLSTFFHLGMGSPQPSRQTGGQGGI
>Mature_383_residues
AIACGFSIANIYYNQPLLGLLQREWGASPLIGLIPAMTQLGFAFGLILLVPLGDAMDRKRLILAQTLALIASLACMAASP
TPPLLLLASVLVGATATIAQQIIPFAAELAGPEQRGKVVGHVMSGLLSGILLARTLSGFAGAYLGWRAMFMVGAALAIAM
GLMLLAFLPSSKPTAQHGYPALLASLFKLAREERELRYAILTQGMLFAAFSAFWSTLVLLLQQPEFHMGSREAGLFGIIG
LVGVLLAPQAGKLADARGPHGIVKLGIALVVASFLVFGVAPNLMGLVVGVILLDAGVQVAMVSHQTIIFALNPAARSRIN
TVYMTGLFVAGALGSAIGGFCWQMLNWNGVAAAGFALGVLSTFFHLGMGSPQPSRQTGGQGGI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily [H]

Homologues:

Organism=Escherichia coli, GI1787880, Length=353, Percent_Identity=24.3626062322946, Blast_Score=77, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 39950; Mature: 39819

Theoretical pI: Translated: 10.11; Mature: 10.11

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIACGFSIANIYYNQPLLGLLQREWGASPLIGLIPAMTQLGFAFGLILLVPLGDAMDRK
CEEEECHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
RLILAQTLALIASLACMAASPTPPLLLLASVLVGATATIAQQIIPFAAELAGPEQRGKVV
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
GHVMSGLLSGILLARTLSGFAGAYLGWRAMFMVGAALAIAMGLMLLAFLPSSKPTAQHGY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
PALLASLFKLAREERELRYAILTQGMLFAAFSAFWSTLVLLLQQPEFHMGSREAGLFGII
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH
GLVGVLLAPQAGKLADARGPHGIVKLGIALVVASFLVFGVAPNLMGLVVGVILLDAGVQV
HHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCE
AMVSHQTIIFALNPAARSRINTVYMTGLFVAGALGSAIGGFCWQMLNWNGVAAAGFALGV
EEEECCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
LSTFFHLGMGSPQPSRQTGGQGGI
HHHHHHHCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
AIACGFSIANIYYNQPLLGLLQREWGASPLIGLIPAMTQLGFAFGLILLVPLGDAMDRK
EEEECHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
RLILAQTLALIASLACMAASPTPPLLLLASVLVGATATIAQQIIPFAAELAGPEQRGKVV
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
GHVMSGLLSGILLARTLSGFAGAYLGWRAMFMVGAALAIAMGLMLLAFLPSSKPTAQHGY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
PALLASLFKLAREERELRYAILTQGMLFAAFSAFWSTLVLLLQQPEFHMGSREAGLFGII
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH
GLVGVLLAPQAGKLADARGPHGIVKLGIALVVASFLVFGVAPNLMGLVVGVILLDAGVQV
HHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCE
AMVSHQTIIFALNPAARSRINTVYMTGLFVAGALGSAIGGFCWQMLNWNGVAAAGFALGV
EEEECCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
LSTFFHLGMGSPQPSRQTGGQGGI
HHHHHHHCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]