| Definition | Chromobacterium violaceum ATCC 12472 chromosome, complete genome. |
|---|---|
| Accession | NC_005085 |
| Length | 4,751,080 |
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The map label for this gene is idiA [H]
Identifier: 34497136
GI number: 34497136
Start: 1822582
End: 1823682
Strand: Reverse
Name: idiA [H]
Synonym: CV_1681
Alternate gene names: 34497136
Gene position: 1823682-1822582 (Counterclockwise)
Preceding gene: 34497137
Following gene: 34497135
Centisome position: 38.38
GC content: 64.4
Gene sequence:
>1101_bases ATGATGAAGCACAAACTGGGTTACATCGCCGTCGCCGGCGCCTTGGGTCTGATCGCCAACGCGGCCAGCGCCGACAATCT CGCCGCCCTGGTCCAGGCCGCCAAGAAGGAAGGCGAGCTGAACACCATCGCCCTGCCCCACGACTGGTGCGGCTACGGCA ATGTGATCGCCGGCTTCAAGGCCAAGTACGGCATCAAGGTCAACGAACTGAATCCGGACGCCGGTTCCGCCGACGAGCTG GAAGCCATCAAGGCCAACAAGAACAACAAGGGACCGCAGGCGCCGGACGTGATCGACGTCGGCCTGTCCTTCGGCCCGCA AGCCAAGGCCGCCGGCCTGCTGCAGCCGTACAAGGTGTCCACCTGGAAGAGCATTCCCGACAACGTCAAGGACAAGGACG GCTACTGGTACGGCGACTACTACGGCGTGCTCACTTTCCAGGTCAACCGCGACCTGGTCAGCAAGGCCCCGGCCGACTGG GCTGACCTCTTGAAGCCGGAATACAAGAACGCCGTGGCGCTGGCGGGCGACCCGCGCGCCGCCAACCAGGCCATCCAGGG CGTGTTCGCCGCCGGCCTGTCCCACGCCAAGGGCGACGTGAACAAAGCCGCCGACGCCGGCCTGAAATTCTTCTCGCAGC TGAACAAGAACGGCAACTTCGTGCCGGTGATCGGCAAGGCCGCCTCGCTGGCCCAGGGCACCACCCCCATCATCGTGCGC TGGGACTACAACGCGCTGGCCGACCGCGACACGCTGAAGGGCAACCCGAAAGTGGACGTGATCGTGCCGAAGAGCGGCGT GGTGGCCGGCGTCTACGCCCAGGCCATCAGCGCCTACGCGCCGCACCCGAACGCCGCCAAGCTGTGGATGGAATACCTGT TCTCCGACGAAGGCCAGGTGGCTTGGCTGAAGGGCTATTGCCACCCGATCCGCTTCAACGACCTGACCGCCAAGAAGAAG ATTCCTTCCGAGCTGATCAGCAAGCTGCCGGACGCCGCCGCCTACAAGAAAGCGGTGTTCCCGACCATCGAGCAGCAAGA GGCCTACAAGGCCGGCATCACCAAGCAGTGGGACAGCGTGGTCGGCAGCAACGTGAAGTAA
Upstream 100 bases:
>100_bases AAACCGTTTTGTCATATTAATGACGTCGTTTTGTCATCAATCCCTCATACCATCGCATCAGTTTTTCGATAGATAGGCCA CCGGCCGCAGAAGGGGAGCA
Downstream 100 bases:
>100_bases AACGCTGCGCCTAGCTTCATCTCCGGGCCGCCGCTGGCGGCCCGTTCACCTAGAGAAACACCGATGTCCGCATCCTCAGA ATCCATGCCGACGCCCTCCT
Product: ABC transporter substrate-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 366; Mature: 366
Protein sequence:
>366_residues MMKHKLGYIAVAGALGLIANAASADNLAALVQAAKKEGELNTIALPHDWCGYGNVIAGFKAKYGIKVNELNPDAGSADEL EAIKANKNNKGPQAPDVIDVGLSFGPQAKAAGLLQPYKVSTWKSIPDNVKDKDGYWYGDYYGVLTFQVNRDLVSKAPADW ADLLKPEYKNAVALAGDPRAANQAIQGVFAAGLSHAKGDVNKAADAGLKFFSQLNKNGNFVPVIGKAASLAQGTTPIIVR WDYNALADRDTLKGNPKVDVIVPKSGVVAGVYAQAISAYAPHPNAAKLWMEYLFSDEGQVAWLKGYCHPIRFNDLTAKKK IPSELISKLPDAAAYKKAVFPTIEQQEAYKAGITKQWDSVVGSNVK
Sequences:
>Translated_366_residues MMKHKLGYIAVAGALGLIANAASADNLAALVQAAKKEGELNTIALPHDWCGYGNVIAGFKAKYGIKVNELNPDAGSADEL EAIKANKNNKGPQAPDVIDVGLSFGPQAKAAGLLQPYKVSTWKSIPDNVKDKDGYWYGDYYGVLTFQVNRDLVSKAPADW ADLLKPEYKNAVALAGDPRAANQAIQGVFAAGLSHAKGDVNKAADAGLKFFSQLNKNGNFVPVIGKAASLAQGTTPIIVR WDYNALADRDTLKGNPKVDVIVPKSGVVAGVYAQAISAYAPHPNAAKLWMEYLFSDEGQVAWLKGYCHPIRFNDLTAKKK IPSELISKLPDAAAYKKAVFPTIEQQEAYKAGITKQWDSVVGSNVK >Mature_366_residues MMKHKLGYIAVAGALGLIANAASADNLAALVQAAKKEGELNTIALPHDWCGYGNVIAGFKAKYGIKVNELNPDAGSADEL EAIKANKNNKGPQAPDVIDVGLSFGPQAKAAGLLQPYKVSTWKSIPDNVKDKDGYWYGDYYGVLTFQVNRDLVSKAPADW ADLLKPEYKNAVALAGDPRAANQAIQGVFAAGLSHAKGDVNKAADAGLKFFSQLNKNGNFVPVIGKAASLAQGTTPIIVR WDYNALADRDTLKGNPKVDVIVPKSGVVAGVYAQAISAYAPHPNAAKLWMEYLFSDEGQVAWLKGYCHPIRFNDLTAKKK IPSELISKLPDAAAYKKAVFPTIEQQEAYKAGITKQWDSVVGSNVK
Specific function: May also be part of a periplasmic ABC transporter complex involved in iron import [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cellular thylakoid membrane; Peripheral membrane protein; Lumenal side [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial solute-binding protein 1 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006059 - InterPro: IPR006311 [H]
Pfam domain/function: PF01547 SBP_bac_1 [H]
EC number: NA
Molecular weight: Translated: 39159; Mature: 39159
Theoretical pI: Translated: 9.43; Mature: 9.43
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMKHKLGYIAVAGALGLIANAASADNLAALVQAAKKEGELNTIALPHDWCGYGNVIAGFK CCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEEECCE AKYGIKVNELNPDAGSADELEAIKANKNNKGPQAPDVIDVGLSFGPQAKAAGLLQPYKVS EECCEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCHHHCCCCCCCCCC TWKSIPDNVKDKDGYWYGDYYGVLTFQVNRDLVSKAPADWADLLKPEYKNAVALAGDPRA HHCCCCCCCCCCCCEEEEEEEEEEEEEECHHHHHCCCCCHHHHCCCHHCCEEEECCCCHH ANQAIQGVFAAGLSHAKGDVNKAADAGLKFFSQLNKNGNFVPVIGKAASLAQGTTPIIVR HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHCCCCCEEEE WDYNALADRDTLKGNPKVDVIVPKSGVVAGVYAQAISAYAPHPNAAKLWMEYLFSDEGQV ECCHHHCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCE AWLKGYCHPIRFNDLTAKKKIPSELISKLPDAAAYKKAVFPTIEQQEAYKAGITKQWDSV EEEECCCCEEECCCCCHHHCCHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHCCCHHHHHH VGSNVK HCCCCC >Mature Secondary Structure MMKHKLGYIAVAGALGLIANAASADNLAALVQAAKKEGELNTIALPHDWCGYGNVIAGFK CCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEEECCE AKYGIKVNELNPDAGSADELEAIKANKNNKGPQAPDVIDVGLSFGPQAKAAGLLQPYKVS EECCEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCHHHCCCCCCCCCC TWKSIPDNVKDKDGYWYGDYYGVLTFQVNRDLVSKAPADWADLLKPEYKNAVALAGDPRA HHCCCCCCCCCCCCEEEEEEEEEEEEEECHHHHHCCCCCHHHHCCCHHCCEEEECCCCHH ANQAIQGVFAAGLSHAKGDVNKAADAGLKFFSQLNKNGNFVPVIGKAASLAQGTTPIIVR HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHCCCCCEEEE WDYNALADRDTLKGNPKVDVIVPKSGVVAGVYAQAISAYAPHPNAAKLWMEYLFSDEGQV ECCHHHCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCE AWLKGYCHPIRFNDLTAKKKIPSELISKLPDAAAYKKAVFPTIEQQEAYKAGITKQWDSV EEEECCCCEEECCCCCHHHCCHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHCCCHHHHHH VGSNVK HCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 8828233; 10411274 [H]