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The map label for this gene is cbiD

Identifier: 34497021

GI number: 34497021

Start: 1678723

End: 1679856

Strand: Reverse

Name: cbiD

Synonym: CV_1566

Alternate gene names: 34497021

Gene position: 1679856-1678723 (Counterclockwise)

Preceding gene: 34497022

Following gene: 34497020

Centisome position: 35.36

GC content: 68.25

Gene sequence:

>1134_bases
ATGAACCCGGTGCGCCAGCCTTACGACCTCGCCGCCCCCGCCCCCAACGGCATGCGCCGCGGCCGCACCACCGGCAGCTG
CGCCACCGCCGCCGTCAAGGCGGCGCTGATGCTGTTGCTGGACGGCGTGGACGCCGACGAGGTCTTCATCAGCCTGCCGG
ACCCGGATTTCTATCTGGCGGTGCCGGTAGAAAGCGTGGCCTGGCTGGACGAAAACACCGTCCGCGCCGAGGTGCTGAAG
TACGCCGGCGACGACCCGGACAACACCGACGGCGCGACGATCTTCGCCGAGGTAAAGCTCAACAGCAGCGGCGCGCTGCG
CTTCCTGGCCGCGCCCGGCGTCGGCATGGTCACCCAGCCCGGCCTGCGCATCCCGCCCGGCGAGCCGGCGATCAACCCGG
TGCCGCGGCAGATGATGCGGATGGCGGTGGACGAAGTACTGGCCGGCCGGCCCGACCCCGGCATCGACCTGGCGATAGGC
TGCGTCGACGGCGACAAGATCGCCAAACGCACCTTCAACCCGATGCTGGGCATCGTCGGCGGCATCTCGATCCTCGGCAC
CAGCGGCATCGTCGAGCCGATGTCGCAGGCGGCGTGGATCGCGTCGATCGAAGTCTATGTGCGGGTGGCACTGGGCGAGC
TGCCGCCGGCCATCGCCTTCACCCCCGGCAAGATAGGCCGCGGCTACGCGGCCGACACGCTGGGGCTAGAGAAAAAACAG
GTCGTCCAGATCGCCAACTTCGTCGGCGACTCGCTGGACTTCGCCGAGTCGGTGCTGATCGAACAGGGCCGCATCCTCGA
CACGCTGTGGGTGCTGGGCCACCCCGGCAAGATCGCCAAGCTGCTGGACGGCGTCTGGGACACCCACTCCGGCAAGAGCG
GCATGGCGATGGACGCCGTCGCCGGCGTCGCCGCCGACCTGGGCTATCCGTCTGAATTGGTGGCGCAAATCAAACAAGCG
AATACCGTGGAGAACGTAGTGCAAATTATGAACAGCCAGCCGGACACGCGCGGCTACTGGATGGAGATAGAACGCCGCAC
CGCCGCGCGGATGGCCACCAAGGTGCCCAGCGTGCGGCAGGTGGCGGTGCGGCTGTTCAGCATGGACGGCACCCCGCTGG
GAGAGGCCGCATGA

Upstream 100 bases:

>100_bases
ACCGCGGCACCCGCGGCGGCTCGCCGTGGGCGGCCACCGTGGTCAACGCGCTGATGATAGACGCGATCGAACACGTCCAT
CAGCAGCAACAACGGGAAGA

Downstream 100 bases:

>100_bases
AGCTGGGACGATTGATAGGCATAGGCGTCGGCCCCGGCCCGGCCGGCTTGATTCCGGTGGCGGCGCTGGCCGCGCTACAC
GAGGCCGACATCGTCTACCT

Product: cobalamin biosynthesis cbiD transmembrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 377; Mature: 377

Protein sequence:

>377_residues
MNPVRQPYDLAAPAPNGMRRGRTTGSCATAAVKAALMLLLDGVDADEVFISLPDPDFYLAVPVESVAWLDENTVRAEVLK
YAGDDPDNTDGATIFAEVKLNSSGALRFLAAPGVGMVTQPGLRIPPGEPAINPVPRQMMRMAVDEVLAGRPDPGIDLAIG
CVDGDKIAKRTFNPMLGIVGGISILGTSGIVEPMSQAAWIASIEVYVRVALGELPPAIAFTPGKIGRGYAADTLGLEKKQ
VVQIANFVGDSLDFAESVLIEQGRILDTLWVLGHPGKIAKLLDGVWDTHSGKSGMAMDAVAGVAADLGYPSELVAQIKQA
NTVENVVQIMNSQPDTRGYWMEIERRTAARMATKVPSVRQVAVRLFSMDGTPLGEAA

Sequences:

>Translated_377_residues
MNPVRQPYDLAAPAPNGMRRGRTTGSCATAAVKAALMLLLDGVDADEVFISLPDPDFYLAVPVESVAWLDENTVRAEVLK
YAGDDPDNTDGATIFAEVKLNSSGALRFLAAPGVGMVTQPGLRIPPGEPAINPVPRQMMRMAVDEVLAGRPDPGIDLAIG
CVDGDKIAKRTFNPMLGIVGGISILGTSGIVEPMSQAAWIASIEVYVRVALGELPPAIAFTPGKIGRGYAADTLGLEKKQ
VVQIANFVGDSLDFAESVLIEQGRILDTLWVLGHPGKIAKLLDGVWDTHSGKSGMAMDAVAGVAADLGYPSELVAQIKQA
NTVENVVQIMNSQPDTRGYWMEIERRTAARMATKVPSVRQVAVRLFSMDGTPLGEAA
>Mature_377_residues
MNPVRQPYDLAAPAPNGMRRGRTTGSCATAAVKAALMLLLDGVDADEVFISLPDPDFYLAVPVESVAWLDENTVRAEVLK
YAGDDPDNTDGATIFAEVKLNSSGALRFLAAPGVGMVTQPGLRIPPGEPAINPVPRQMMRMAVDEVLAGRPDPGIDLAIG
CVDGDKIAKRTFNPMLGIVGGISILGTSGIVEPMSQAAWIASIEVYVRVALGELPPAIAFTPGKIGRGYAADTLGLEKKQ
VVQIANFVGDSLDFAESVLIEQGRILDTLWVLGHPGKIAKLLDGVWDTHSGKSGMAMDAVAGVAADLGYPSELVAQIKQA
NTVENVVQIMNSQPDTRGYWMEIERRTAARMATKVPSVRQVAVRLFSMDGTPLGEAA

Specific function: May catalyze the methylation of C-1 in cobalt-precorrin- 5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A

COG id: COG1903

COG function: function code H; Cobalamin biosynthesis protein CbiD

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CbiD family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CBID_CHRVO (Q7NXR0)

Other databases:

- EMBL:   AE016825
- RefSeq:   NP_901236.1
- ProteinModelPortal:   Q7NXR0
- SMR:   Q7NXR0
- GeneID:   2546975
- GenomeReviews:   AE016825_GR
- KEGG:   cvi:CV_1566
- NMPDR:   fig|243365.1.peg.1566
- HOGENOM:   HBG705387
- OMA:   HTHARTA
- ProtClustDB:   CLSK449416
- BioCyc:   CVIO243365:CV_1566-MONOMER
- HAMAP:   MF_00787
- InterPro:   IPR002748
- PIRSF:   PIRSF026782
- TIGRFAMs:   TIGR00312

Pfam domain/function: PF01888 CbiD; SSF111342 Cbl_biosynth_CbiD

EC number: NA

Molecular weight: Translated: 39916; Mature: 39916

Theoretical pI: Translated: 4.58; Mature: 4.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPVRQPYDLAAPAPNGMRRGRTTGSCATAAVKAALMLLLDGVDADEVFISLPDPDFYLA
CCCCCCCCCCCCCCCCCHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCEEEE
VPVESVAWLDENTVRAEVLKYAGDDPDNTDGATIFAEVKLNSSGALRFLAAPGVGMVTQP
ECHHHHHHCCCCHHHHHHHHHCCCCCCCCCCEEEEEEEEECCCCCEEEEECCCCCCCCCC
GLRIPPGEPAINPVPRQMMRMAVDEVLAGRPDPGIDLAIGCVDGDKIAKRTFNPMLGIVG
CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHH
GISILGTSGIVEPMSQAAWIASIEVYVRVALGELPPAIAFTPGKIGRGYAADTLGLEKKQ
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHCCCCHHH
VVQIANFVGDSLDFAESVLIEQGRILDTLWVLGHPGKIAKLLDGVWDTHSGKSGMAMDAV
HHHHHHHHCCHHHHHHHHHHHCCCCEEHHHECCCCHHHHHHHHHHHCCCCCCCCCHHHHH
AGVAADLGYPSELVAQIKQANTVENVVQIMNSQPDTRGYWMEIERRTAARMATKVPSVRQ
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHCCCHHHH
VAVRLFSMDGTPLGEAA
HHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MNPVRQPYDLAAPAPNGMRRGRTTGSCATAAVKAALMLLLDGVDADEVFISLPDPDFYLA
CCCCCCCCCCCCCCCCCHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCEEEE
VPVESVAWLDENTVRAEVLKYAGDDPDNTDGATIFAEVKLNSSGALRFLAAPGVGMVTQP
ECHHHHHHCCCCHHHHHHHHHCCCCCCCCCCEEEEEEEEECCCCCEEEEECCCCCCCCCC
GLRIPPGEPAINPVPRQMMRMAVDEVLAGRPDPGIDLAIGCVDGDKIAKRTFNPMLGIVG
CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHH
GISILGTSGIVEPMSQAAWIASIEVYVRVALGELPPAIAFTPGKIGRGYAADTLGLEKKQ
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHCCCCHHH
VVQIANFVGDSLDFAESVLIEQGRILDTLWVLGHPGKIAKLLDGVWDTHSGKSGMAMDAV
HHHHHHHHCCHHHHHHHHHHHCCCCEEHHHECCCCHHHHHHHHHHHCCCCCCCCCHHHHH
AGVAADLGYPSELVAQIKQANTVENVVQIMNSQPDTRGYWMEIERRTAARMATKVPSVRQ
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHCCCHHHH
VAVRLFSMDGTPLGEAA
HHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 14500782