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The map label for this gene is rbcR [H]

Identifier: 34496950

GI number: 34496950

Start: 1598450

End: 1599370

Strand: Direct

Name: rbcR [H]

Synonym: CV_1495

Alternate gene names: 34496950

Gene position: 1598450-1599370 (Clockwise)

Preceding gene: 34496948

Following gene: 161594055

Centisome position: 33.64

GC content: 67.1

Gene sequence:

>921_bases
ATGCGGGACATCAATCAACAACGGCTGCGCTATTTCCGGGAGGTGCTGCGGCACGGCTCGATACGCGGCGCGGCCGACAG
CCTCAACACCTCGCCGTCGGTGATCACGCGCCAGATCAAATTGCTGGAGGACGAGCTGGACGCCGTACTGTTCGAACGCG
CGGCGCGCGGAGTCAGGCCGACCGAGGCCGCCGCGCATCTGCTGGAATATTGGCGCGGCTGCCGCTCGCACCAGGAGCAA
TTGGAAGACCAGTTGCTGGCCCTGAAAGGGCTGCGGCAAGGGCAGGTGCGGCTGGCGATCAGCGAAGGGTATGTCGACGC
CTTGGTCGACGAGGTGCTGACCCCGTTCTGCCGGCAATATCCGCAACTTGAAATCGGGCTGGAGATGTGGCCGGTCGACG
ATCTGCTGCGCGAAGTGGCGGAAGGGCGCGCGCACATCGGCCTGGCCTACAATCCGCCCGCGCATCCCCACATCGAATAT
CGCGCCAGCTCCGCGCAGCCGGTCGTGCTGCTGGCCCGGCCGGACCATCCGCTGGCGCAGCGGGGCGGTTCCGCCTGCAT
CGCAGACCTGCTGTCCTACCCGCTGGCCTTGATGCCGCCGGCGTTCGGCATCGGCCACGCGGTCAGGATGCTGGAATTCG
CCGAGGGCATCCGGATTCGCCCGGCGCTGACCACCAATTCGCTGTCCGCGCTTAAGCGCATCGTCGCCGCCGACAACTTT
GTCGCGCTGATCGGCGAGTTCGCCGCTTACCGCGAGCTGCTGGCCGGCGAATTGACCGTCGTGCCGATCGACCATCCGCT
GCTGCAAGGAGCCAAGGCCAGGCTGCTGGTCAAGGCAGGCCGTCCGCTGGCGGCCGCGCCCCGTGAGTTGCTCGCCTGGA
TTGAGCGACGGATGTCGATGTTCGCTCTGCCCGCGGGCTAG

Upstream 100 bases:

>100_bases
GGGCAGGTGGCCTCACTATGCCAACTTGCTGATCTCACAGGAATAGCAACAATGCGCACACTTCGTTGCTCCATGAGCAA
CACAAAGCCGGAGCCTGAGC

Downstream 100 bases:

>100_bases
GCCCCAGGCGCGCGTCGCCGCTGCCGGCGGGCGGCGATGCTTTTGCATGGTGGTAGACTGTTCCGGAATGAAGTGGTGGG
AGGCGTTCTCAATGTTTGGC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 306; Mature: 306

Protein sequence:

>306_residues
MRDINQQRLRYFREVLRHGSIRGAADSLNTSPSVITRQIKLLEDELDAVLFERAARGVRPTEAAAHLLEYWRGCRSHQEQ
LEDQLLALKGLRQGQVRLAISEGYVDALVDEVLTPFCRQYPQLEIGLEMWPVDDLLREVAEGRAHIGLAYNPPAHPHIEY
RASSAQPVVLLARPDHPLAQRGGSACIADLLSYPLALMPPAFGIGHAVRMLEFAEGIRIRPALTTNSLSALKRIVAADNF
VALIGEFAAYRELLAGELTVVPIDHPLLQGAKARLLVKAGRPLAAAPRELLAWIERRMSMFALPAG

Sequences:

>Translated_306_residues
MRDINQQRLRYFREVLRHGSIRGAADSLNTSPSVITRQIKLLEDELDAVLFERAARGVRPTEAAAHLLEYWRGCRSHQEQ
LEDQLLALKGLRQGQVRLAISEGYVDALVDEVLTPFCRQYPQLEIGLEMWPVDDLLREVAEGRAHIGLAYNPPAHPHIEY
RASSAQPVVLLARPDHPLAQRGGSACIADLLSYPLALMPPAFGIGHAVRMLEFAEGIRIRPALTTNSLSALKRIVAADNF
VALIGEFAAYRELLAGELTVVPIDHPLLQGAKARLLVKAGRPLAAAPRELLAWIERRMSMFALPAG
>Mature_306_residues
MRDINQQRLRYFREVLRHGSIRGAADSLNTSPSVITRQIKLLEDELDAVLFERAARGVRPTEAAAHLLEYWRGCRSHQEQ
LEDQLLALKGLRQGQVRLAISEGYVDALVDEVLTPFCRQYPQLEIGLEMWPVDDLLREVAEGRAHIGLAYNPPAHPHIEY
RASSAQPVVLLARPDHPLAQRGGSACIADLLSYPLALMPPAFGIGHAVRMLEFAEGIRIRPALTTNSLSALKRIVAADNF
VALIGEFAAYRELLAGELTVVPIDHPLLQGAKARLLVKAGRPLAAAPRELLAWIERRMSMFALPAG

Specific function: Trans-acting transcriptional regulator of RuBisCO genes (rbcAB) expression [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787601, Length=273, Percent_Identity=24.9084249084249, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI157672245, Length=242, Percent_Identity=23.5537190082645, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI87081978, Length=256, Percent_Identity=24.609375, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1789440, Length=122, Percent_Identity=28.6885245901639, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI145693105, Length=173, Percent_Identity=25.4335260115607, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1787879, Length=265, Percent_Identity=24.9056603773585, Blast_Score=61, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33886; Mature: 33886

Theoretical pI: Translated: 7.69; Mature: 7.69

Prosite motif: PS50931 HTH_LYSR ; PS00228 TUBULIN_B_AUTOREG

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRDINQQRLRYFREVLRHGSIRGAADSLNTSPSVITRQIKLLEDELDAVLFERAARGVRP
CCCCCHHHHHHHHHHHHCCCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
TEAAAHLLEYWRGCRSHQEQLEDQLLALKGLRQGQVRLAISEGYVDALVDEVLTPFCRQY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHC
PQLEIGLEMWPVDDLLREVAEGRAHIGLAYNPPAHPHIEYRASSAQPVVLLARPDHPLAQ
CCEEECCEECCHHHHHHHHHCCCCEEEEEECCCCCCCEEEECCCCCCEEEEECCCCHHHH
RGGSACIADLLSYPLALMPPAFGIGHAVRMLEFAEGIRIRPALTTNSLSALKRIVAADNF
CCCHHHHHHHHHCCHHHCCCCCHHHHHHHHHHHHCCCEECCCCCHHHHHHHHHHHHCCHH
VALIGEFAAYRELLAGELTVVPIDHPLLQGAKARLLVKAGRPLAAAPRELLAWIERRMSM
HHHHHHHHHHHHHHHCCEEEEECCCHHHCCCHHEEEEECCCCCCCCHHHHHHHHHHHHHH
FALPAG
HCCCCC
>Mature Secondary Structure
MRDINQQRLRYFREVLRHGSIRGAADSLNTSPSVITRQIKLLEDELDAVLFERAARGVRP
CCCCCHHHHHHHHHHHHCCCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
TEAAAHLLEYWRGCRSHQEQLEDQLLALKGLRQGQVRLAISEGYVDALVDEVLTPFCRQY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHC
PQLEIGLEMWPVDDLLREVAEGRAHIGLAYNPPAHPHIEYRASSAQPVVLLARPDHPLAQ
CCEEECCEECCHHHHHHHHHCCCCEEEEEECCCCCCCEEEECCCCCCEEEEECCCCHHHH
RGGSACIADLLSYPLALMPPAFGIGHAVRMLEFAEGIRIRPALTTNSLSALKRIVAADNF
CCCHHHHHHHHHCCHHHCCCCCHHHHHHHHHHHHCCCEECCCCCHHHHHHHHHHHHCCHH
VALIGEFAAYRELLAGELTVVPIDHPLLQGAKARLLVKAGRPLAAAPRELLAWIERRMSM
HHHHHHHHHHHHHHHCCEEEEECCCHHHCCCHHEEEEECCCCCCCCHHHHHHHHHHHHHH
FALPAG
HCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1907267; 2708310 [H]