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The map label for this gene is rbfA

Identifier: 34496918

GI number: 34496918

Start: 1554059

End: 1554475

Strand: Direct

Name: rbfA

Synonym: CV_1463

Alternate gene names: 34496918

Gene position: 1554059-1554475 (Clockwise)

Preceding gene: 34496917

Following gene: 34496919

Centisome position: 32.71

GC content: 64.03

Gene sequence:

>417_bases
ATGGCCAAAGCCAAAAAAGGTTTTTCCCGCTCGGACCGCGTCGCCGAGCAGATCCAGCGCGAGCTGGCCGAGCTGACCCG
AAAGGGCCTGAAGGATCCGCGCGCCGGCTGGATCACCATCACCGCGGTGGAAGTGACCCGCGACTATTCGCACGCCAAGG
TTTACTACACGGTGATGGTGGACAGTACGCGCGAAGCCACCCAGGAGGCGCTGGACAGCTCCGCCGGCTATCTGCGCAAC
GAGCTGGGCCGCGCGATCAAGATGTTCAGCATGCCGCAGCTGCATTTCGTCTATGACGACTCCGTCGAGCGCGGCATGCA
CCTGACCAGCCTGATCAATCAGGTGGCGCGCGAGGATGCCGAGAAGTTCGGCGAGGCGGCCGCTGGCGAAGCCGAAGGCG
AGGGCAAGGCCGAATGA

Upstream 100 bases:

>100_bases
CACGACGCCCGTCCAAGCGCATGCCGTTCAGCGTGCGTTTTGACGGGCCCCGTGGCTTAGCGGCCGCATGGGCCGCGTTT
GCAACAGAATTGGAAGTGAT

Downstream 100 bases:

>100_bases
GCAAGCCGCGCAGCAACCGCCGCCACATCGATGGCGTGCTGCTGATCGACAAGCCTTACGACATTTCCAGCAACAATGCG
CTGCAGAAGGCGCGCTGGCT

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 138; Mature: 137

Protein sequence:

>138_residues
MAKAKKGFSRSDRVAEQIQRELAELTRKGLKDPRAGWITITAVEVTRDYSHAKVYYTVMVDSTREATQEALDSSAGYLRN
ELGRAIKMFSMPQLHFVYDDSVERGMHLTSLINQVAREDAEKFGEAAAGEAEGEGKAE

Sequences:

>Translated_138_residues
MAKAKKGFSRSDRVAEQIQRELAELTRKGLKDPRAGWITITAVEVTRDYSHAKVYYTVMVDSTREATQEALDSSAGYLRN
ELGRAIKMFSMPQLHFVYDDSVERGMHLTSLINQVAREDAEKFGEAAAGEAEGEGKAE
>Mature_137_residues
AKAKKGFSRSDRVAEQIQRELAELTRKGLKDPRAGWITITAVEVTRDYSHAKVYYTVMVDSTREATQEALDSSAGYLRNE
LGRAIKMFSMPQLHFVYDDSVERGMHLTSLINQVAREDAEKFGEAAAGEAEGEGKAE

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family

Homologues:

Organism=Escherichia coli, GI1789558, Length=121, Percent_Identity=37.1900826446281, Blast_Score=97, Evalue=4e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBFA_CHRVO (Q7NY12)

Other databases:

- EMBL:   AE016825
- RefSeq:   NP_901133.1
- ProteinModelPortal:   Q7NY12
- SMR:   Q7NY12
- GeneID:   2550355
- GenomeReviews:   AE016825_GR
- KEGG:   cvi:CV_1463
- NMPDR:   fig|243365.1.peg.1463
- HOGENOM:   HBG751055
- OMA:   SIEYGNR
- PhylomeDB:   Q7NY12
- ProtClustDB:   PRK00521
- BioCyc:   CVIO243365:CV_1463-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00003
- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- Gene3D:   G3DSA:3.30.300.20
- ProDom:   PD007327
- TIGRFAMs:   TIGR00082

Pfam domain/function: PF02033 RBFA; SSF89919 Rib_bd_factA

EC number: NA

Molecular weight: Translated: 15387; Mature: 15256

Theoretical pI: Translated: 5.75; Mature: 5.75

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKAKKGFSRSDRVAEQIQRELAELTRKGLKDPRAGWITITAVEVTRDYSHAKVYYTVMV
CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEECCCCCCEEEEEEEE
DSTREATQEALDSSAGYLRNELGRAIKMFSMPQLHFVYDDSVERGMHLTSLINQVAREDA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHH
EKFGEAAAGEAEGEGKAE
HHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
AKAKKGFSRSDRVAEQIQRELAELTRKGLKDPRAGWITITAVEVTRDYSHAKVYYTVMV
CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEECCCCCCEEEEEEEE
DSTREATQEALDSSAGYLRNELGRAIKMFSMPQLHFVYDDSVERGMHLTSLINQVAREDA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHH
EKFGEAAAGEAEGEGKAE
HHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 14500782