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The map label for this gene is ydcR [H]

Identifier: 34496906

GI number: 34496906

Start: 1538275

End: 1539660

Strand: Reverse

Name: ydcR [H]

Synonym: CV_1451

Alternate gene names: 34496906

Gene position: 1539660-1538275 (Counterclockwise)

Preceding gene: 34496907

Following gene: 34496904

Centisome position: 32.41

GC content: 68.61

Gene sequence:

>1386_bases
ATGAACAAAACCGGCCAATTGAGCCAACGCTTCCGCCATGCGATAGAACAGGGCCATCTGCGCGCCGGCGACCGCATGCC
CTCGCTGCGCAAGGTGTGCCAGGACCACAAGATCAGCATCACCACCGCGCAGCGCGCCTACGCCGAACTGGAAAAACTGG
GGCTGATCGAATCGCTGCCGCGCTCCGGCTTCCGCGTGCTGGCGCGCAGCAGCGCGCTGCCCAGCAACCTGCCGCTCAAC
AGCGACGGCAGCGGCATCCGCATCGAGCACCTGACCAGCGCGCTGCCCATGCCCTGGGGCTGCCCCTACATGAACCCGGC
GCTGATCAACACCACGCCGCTGAACCGCGCCCTCACCCGCGCGCTGCGGGACTACCGCTACGCACTGTCCGGCAACGCCA
GCACCGGCTACGAAGGCCTGCGCCGCGAGCTGACGCTGCGCTACCTGGCCCAGGGCGTGGAGCTGGACGGCGACGAGCTG
CTGGTCACCTGCGGCGGCATGGAAGCGCTGAACCTGGCGATACGCGCGGTGACCAAGCTGTCCGGCAGCCAGGCGATGCT
GGTGCTGACCCCGGCCTTCCCGGCGCTGTTCGACCAACTGGACCAGCTGGGCGTCACCGTGCACACGCTGGCCACGCCGC
CCGGCCAGCCGCTGGACCTGGAGCGGATGGAGCAGTTGATCCTCCAGCACCAGCCGGCCGGCATCCTGGCGATGGCCAAC
TTCCAGCACCCCACCGGCCTGACGATGAGCGACCACGACAAGGCGTCGCTGCTGGCGCTGGCGGACCGGCACCGGCTGCC
CATCATCGAGGACGACACCTACCGCGAACTGTATTTCGGCGAAAGCGCGCCCTTGCCGCTGAAGGCCTACGACCAGAAAG
GCAGCGTGCTGTACTGTTCCTCGTTCAGCAAGTCGCTGGCGCCGGGCTACCGCGTCGGCTGGATCGCCGCCGGCCGCTAC
CGCGACAGCATCCTGGGCCTGAAGCTGTGCAGTTCGCTGTCCACGCCGCTGCCCAGCCAGATGGCGCTGGCCCGGTTGCT
GTCCGGCGGACAGCACGAGGACATGCTCAGCCTGCTGCGCAGCCGGCTGCAGGCCAACTGGCTGGCAATGAGCCAGCAGC
TGGCCGTCCAGATGCCGGCCGGCGCCCGCCAGATCACGCCGCAAGGCGGCTATTTCCTGTGGCTGGAGCTGCCGGAGGGC
AGCGACTGCCGCGCCCGGCTGCCGGCCGCGATGCAGCGCGGCATGCACTTCGCGCCCGGCTCGCTGTTCTTCCGTGACGC
CCAGCCCAGGCTGAACGCGATGCGGCTCAACTTCAGCTATTTTGACCCGCTGCAACAGCACAACGGCGTGGCGATGCTGG
CGGAAAGCCTGGCCAAGCAGGACTGA

Upstream 100 bases:

>100_bases
GCATCGCATCCACTTCGTGATACGCTCGCTGAACGATGACGTTTCGATAAGGGAAAAATCCAGCTTCATCGGCGAGTAAG
CCGGGTCAGGAAAACAATAT

Downstream 100 bases:

>100_bases
AGCCCCTTCAGCCCACCGGTGGGCCGCATGGGACATGGTGTTCATGCGGCCTCAGTTTTGAGCTGGGCCAAGGGTTAGGC
GTCGCCGCGCTGCCAAACAT

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 461; Mature: 461

Protein sequence:

>461_residues
MNKTGQLSQRFRHAIEQGHLRAGDRMPSLRKVCQDHKISITTAQRAYAELEKLGLIESLPRSGFRVLARSSALPSNLPLN
SDGSGIRIEHLTSALPMPWGCPYMNPALINTTPLNRALTRALRDYRYALSGNASTGYEGLRRELTLRYLAQGVELDGDEL
LVTCGGMEALNLAIRAVTKLSGSQAMLVLTPAFPALFDQLDQLGVTVHTLATPPGQPLDLERMEQLILQHQPAGILAMAN
FQHPTGLTMSDHDKASLLALADRHRLPIIEDDTYRELYFGESAPLPLKAYDQKGSVLYCSSFSKSLAPGYRVGWIAAGRY
RDSILGLKLCSSLSTPLPSQMALARLLSGGQHEDMLSLLRSRLQANWLAMSQQLAVQMPAGARQITPQGGYFLWLELPEG
SDCRARLPAAMQRGMHFAPGSLFFRDAQPRLNAMRLNFSYFDPLQQHNGVAMLAESLAKQD

Sequences:

>Translated_461_residues
MNKTGQLSQRFRHAIEQGHLRAGDRMPSLRKVCQDHKISITTAQRAYAELEKLGLIESLPRSGFRVLARSSALPSNLPLN
SDGSGIRIEHLTSALPMPWGCPYMNPALINTTPLNRALTRALRDYRYALSGNASTGYEGLRRELTLRYLAQGVELDGDEL
LVTCGGMEALNLAIRAVTKLSGSQAMLVLTPAFPALFDQLDQLGVTVHTLATPPGQPLDLERMEQLILQHQPAGILAMAN
FQHPTGLTMSDHDKASLLALADRHRLPIIEDDTYRELYFGESAPLPLKAYDQKGSVLYCSSFSKSLAPGYRVGWIAAGRY
RDSILGLKLCSSLSTPLPSQMALARLLSGGQHEDMLSLLRSRLQANWLAMSQQLAVQMPAGARQITPQGGYFLWLELPEG
SDCRARLPAAMQRGMHFAPGSLFFRDAQPRLNAMRLNFSYFDPLQQHNGVAMLAESLAKQD
>Mature_461_residues
MNKTGQLSQRFRHAIEQGHLRAGDRMPSLRKVCQDHKISITTAQRAYAELEKLGLIESLPRSGFRVLARSSALPSNLPLN
SDGSGIRIEHLTSALPMPWGCPYMNPALINTTPLNRALTRALRDYRYALSGNASTGYEGLRRELTLRYLAQGVELDGDEL
LVTCGGMEALNLAIRAVTKLSGSQAMLVLTPAFPALFDQLDQLGVTVHTLATPPGQPLDLERMEQLILQHQPAGILAMAN
FQHPTGLTMSDHDKASLLALADRHRLPIIEDDTYRELYFGESAPLPLKAYDQKGSVLYCSSFSKSLAPGYRVGWIAAGRY
RDSILGLKLCSSLSTPLPSQMALARLLSGGQHEDMLSLLRSRLQANWLAMSQQLAVQMPAGARQITPQGGYFLWLELPEG
SDCRARLPAAMQRGMHFAPGSLFFRDAQPRLNAMRLNFSYFDPLQQHNGVAMLAESLAKQD

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI4507369, Length=344, Percent_Identity=24.7093023255814, Blast_Score=82, Evalue=8e-16,
Organism=Homo sapiens, GI7705897, Length=321, Percent_Identity=22.1183800623053, Blast_Score=69, Evalue=1e-11,
Organism=Homo sapiens, GI33469970, Length=321, Percent_Identity=22.1183800623053, Blast_Score=69, Evalue=1e-11,
Organism=Escherichia coli, GI1787710, Length=434, Percent_Identity=35.2534562211982, Blast_Score=238, Evalue=6e-64,
Organism=Escherichia coli, GI1790797, Length=454, Percent_Identity=32.3788546255507, Blast_Score=205, Evalue=6e-54,
Organism=Drosophila melanogaster, GI21356535, Length=345, Percent_Identity=22.3188405797101, Blast_Score=86, Evalue=5e-17,
Organism=Drosophila melanogaster, GI18859735, Length=244, Percent_Identity=29.5081967213115, Blast_Score=84, Evalue=2e-16,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 50803; Mature: 50803

Theoretical pI: Translated: 8.92; Mature: 8.92

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKTGQLSQRFRHAIEQGHLRAGDRMPSLRKVCQDHKISITTAQRAYAELEKLGLIESLP
CCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHCC
RSGFRVLARSSALPSNLPLNSDGSGIRIEHLTSALPMPWGCPYMNPALINTTPLNRALTR
CHHHHHHHHCCCCCCCCCCCCCCCCEEHHHHHHCCCCCCCCCCCCCCEEECCCHHHHHHH
ALRDYRYALSGNASTGYEGLRRELTLRYLAQGVELDGDELLVTCGGMEALNLAIRAVTKL
HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHHC
SGSQAMLVLTPAFPALFDQLDQLGVTVHTLATPPGQPLDLERMEQLILQHQPAGILAMAN
CCCCEEEEECCCHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEEC
FQHPTGLTMSDHDKASLLALADRHRLPIIEDDTYRELYFGESAPLPLKAYDQKGSVLYCS
CCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHEEECCCCCCCCEEECCCCCEEEEE
SFSKSLAPGYRVGWIAAGRYRDSILGLKLCSSLSTPLPSQMALARLLSGGQHEDMLSLLR
CCCHHCCCCCEEEEEEECCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHH
SRLQANWLAMSQQLAVQMPAGARQITPQGGYFLWLELPEGSDCRARLPAAMQRGMHFAPG
HHHHHHHHHHHHHHHEECCCCCCEECCCCCEEEEEECCCCCCCHHHCHHHHHCCCCCCCC
SLFFRDAQPRLNAMRLNFSYFDPLQQHNGVAMLAESLAKQD
CEEEECCCCCCEEEEECCHHHCHHHHCCCHHHHHHHHHCCC
>Mature Secondary Structure
MNKTGQLSQRFRHAIEQGHLRAGDRMPSLRKVCQDHKISITTAQRAYAELEKLGLIESLP
CCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHCC
RSGFRVLARSSALPSNLPLNSDGSGIRIEHLTSALPMPWGCPYMNPALINTTPLNRALTR
CHHHHHHHHCCCCCCCCCCCCCCCCEEHHHHHHCCCCCCCCCCCCCCEEECCCHHHHHHH
ALRDYRYALSGNASTGYEGLRRELTLRYLAQGVELDGDELLVTCGGMEALNLAIRAVTKL
HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHHC
SGSQAMLVLTPAFPALFDQLDQLGVTVHTLATPPGQPLDLERMEQLILQHQPAGILAMAN
CCCCEEEEECCCHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEEC
FQHPTGLTMSDHDKASLLALADRHRLPIIEDDTYRELYFGESAPLPLKAYDQKGSVLYCS
CCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHEEECCCCCCCCEEECCCCCEEEEE
SFSKSLAPGYRVGWIAAGRYRDSILGLKLCSSLSTPLPSQMALARLLSGGQHEDMLSLLR
CCCHHCCCCCEEEEEEECCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHH
SRLQANWLAMSQQLAVQMPAGARQITPQGGYFLWLELPEGSDCRARLPAAMQRGMHFAPG
HHHHHHHHHHHHHHHEECCCCCCEECCCCCEEEEEECCCCCCCHHHCHHHHHCCCCCCCC
SLFFRDAQPRLNAMRLNFSYFDPLQQHNGVAMLAESLAKQD
CEEEECCCCCCEEEEECCHHHCHHHHCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]