| Definition | Chromobacterium violaceum ATCC 12472 chromosome, complete genome. |
|---|---|
| Accession | NC_005085 |
| Length | 4,751,080 |
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The map label for this gene is creB [H]
Identifier: 34496836
GI number: 34496836
Start: 1457356
End: 1457994
Strand: Direct
Name: creB [H]
Synonym: CV_1381
Alternate gene names: 34496836
Gene position: 1457356-1457994 (Clockwise)
Preceding gene: 34496835
Following gene: 34496837
Centisome position: 30.67
GC content: 71.36
Gene sequence:
>639_bases TTGCTGATTGAAGACGACGCCGAACTGGGCGCGGGCCTGCGCCAATTCCTGCAGCAGCAGGGCTACGACTGCCTGTGGCT GCGCGACGGCGGCGAAGTGGCCGCCCACTGGCGGCAGGCCGAGCTGGCGATCCTGGACCGCCAGCTGCCGGACGGCGATT CGCTGCGCCTGTTGCCGCAGTGGCTGGCGCTGAAGGCGCTGCCGGTGATCGTGCTTACCGCCCGGGTGGAGCTCGATGAC CGGGTGGCCGGGCTGGAGGCCGGCGCGCGCGACTACCTGACCAAGCCCTTCGCCCATGTCGAGCTGCTGGCCCGCGTGCG CGCCCAATTGCGACCGCTGGGCGAGGGCGCCTTGGCCTGCGGCGAGCTGCAGTTGTTTCCGGCCAGGCAGGCTGCGGCCT GGCGCGGCGGCGAGGTGGCGCTCACCCGCACCGAGTTCGACCTGCTGGCGATGCTGGCGCGGATGCCGGGCCGGGTGTTC ACCCGCGACGAGCTGCTGAACCAGGTATGGGGCTACCAGCATTTCCCGTCCACCCGCACCGTGGACACCCATGTGCTGCA GCTGCGGCAGAAGCTGCCCGACATCCCGATAGAAACCGTGCGCGGCGTCGGCTACCGGCTGAGCGGGGGCGGGGCGTGA
Upstream 100 bases:
>100_bases GGCCTGGCCATCGTGCGGCGGGTGATGGCCAGGCTGGGCGGCCGGCTGACGCTGGAAGGGCCGCCGACCACATTCGCGCT GGAGTTGCCGTGTGACGATA
Downstream 100 bases:
>100_bases GGCCGCCATTCTGGCTGGCCCTGGCCTGGGCGGCGCAGGCGGCCGCCGCGCCGCTGCTTCCGGCCACGCCGCTGGAGCCG GCCTATCACGCCTTGCTTTC
Product: transcriptional regulator
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 212; Mature: 212
Protein sequence:
>212_residues MLIEDDAELGAGLRQFLQQQGYDCLWLRDGGEVAAHWRQAELAILDRQLPDGDSLRLLPQWLALKALPVIVLTARVELDD RVAGLEAGARDYLTKPFAHVELLARVRAQLRPLGEGALACGELQLFPARQAAAWRGGEVALTRTEFDLLAMLARMPGRVF TRDELLNQVWGYQHFPSTRTVDTHVLQLRQKLPDIPIETVRGVGYRLSGGGA
Sequences:
>Translated_212_residues MLIEDDAELGAGLRQFLQQQGYDCLWLRDGGEVAAHWRQAELAILDRQLPDGDSLRLLPQWLALKALPVIVLTARVELDD RVAGLEAGARDYLTKPFAHVELLARVRAQLRPLGEGALACGELQLFPARQAAAWRGGEVALTRTEFDLLAMLARMPGRVF TRDELLNQVWGYQHFPSTRTVDTHVLQLRQKLPDIPIETVRGVGYRLSGGGA >Mature_212_residues MLIEDDAELGAGLRQFLQQQGYDCLWLRDGGEVAAHWRQAELAILDRQLPDGDSLRLLPQWLALKALPVIVLTARVELDD RVAGLEAGARDYLTKPFAHVELLARVRAQLRPLGEGALACGELQLFPARQAAAWRGGEVALTRTEFDLLAMLARMPGRVF TRDELLNQVWGYQHFPSTRTVDTHVLQLRQKLPDIPIETVRGVGYRLSGGGA
Specific function: Member of the two-component regulatory system phoP/phoR involved in the regulation of alkaline phosphatase genes phoA and phoB and of phosphodiesterase [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 response regulatory domain [H]
Homologues:
Organism=Escherichia coli, GI1790860, Length=221, Percent_Identity=41.1764705882353, Blast_Score=128, Evalue=3e-31, Organism=Escherichia coli, GI1790552, Length=214, Percent_Identity=40.6542056074766, Blast_Score=125, Evalue=2e-30, Organism=Escherichia coli, GI1788394, Length=218, Percent_Identity=36.2385321100917, Blast_Score=124, Evalue=5e-30, Organism=Escherichia coli, GI87082012, Length=215, Percent_Identity=38.1395348837209, Blast_Score=120, Evalue=5e-29, Organism=Escherichia coli, GI1786599, Length=221, Percent_Identity=34.841628959276, Blast_Score=120, Evalue=9e-29, Organism=Escherichia coli, GI2367329, Length=222, Percent_Identity=36.4864864864865, Blast_Score=117, Evalue=5e-28, Organism=Escherichia coli, GI1789402, Length=213, Percent_Identity=36.150234741784, Blast_Score=115, Evalue=2e-27, Organism=Escherichia coli, GI1786784, Length=221, Percent_Identity=36.1990950226244, Blast_Score=107, Evalue=6e-25, Organism=Escherichia coli, GI1786911, Length=219, Percent_Identity=35.6164383561644, Blast_Score=104, Evalue=3e-24, Organism=Escherichia coli, GI1787375, Length=215, Percent_Identity=32.093023255814, Blast_Score=100, Evalue=1e-22, Organism=Escherichia coli, GI1789809, Length=230, Percent_Identity=30, Blast_Score=94, Evalue=1e-20, Organism=Escherichia coli, GI1790863, Length=228, Percent_Identity=28.9473684210526, Blast_Score=93, Evalue=1e-20, Organism=Escherichia coli, GI1787229, Length=223, Percent_Identity=29.5964125560538, Blast_Score=83, Evalue=1e-17, Organism=Escherichia coli, GI145693140, Length=227, Percent_Identity=27.7533039647577, Blast_Score=65, Evalue=3e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011006 - InterPro: IPR001867 - InterPro: IPR016032 - InterPro: IPR001789 - InterPro: IPR011991 [H]
Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]
EC number: NA
Molecular weight: Translated: 23584; Mature: 23584
Theoretical pI: Translated: 6.13; Mature: 6.13
Prosite motif: PS50110 RESPONSE_REGULATORY
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLIEDDAELGAGLRQFLQQQGYDCLWLRDGGEVAAHWRQAELAILDRQLPDGDSLRLLPQ CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHH WLALKALPVIVLTARVELDDRVAGLEAGARDYLTKPFAHVELLARVRAQLRPLGEGALAC HHHHHHHHHHEEEEEECCCHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHCCCCCCCEEE GELQLFPARQAAAWRGGEVALTRTEFDLLAMLARMPGRVFTRDELLNQVWGYQHFPSTRT CCEEECCCHHHHCCCCCCEEEEEHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCC VDTHVLQLRQKLPDIPIETVRGVGYRLSGGGA HHHHHHHHHHHCCCCCHHHHCCCCEEECCCCC >Mature Secondary Structure MLIEDDAELGAGLRQFLQQQGYDCLWLRDGGEVAAHWRQAELAILDRQLPDGDSLRLLPQ CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHH WLALKALPVIVLTARVELDDRVAGLEAGARDYLTKPFAHVELLARVRAQLRPLGEGALAC HHHHHHHHHHEEEEEECCCHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHCCCCCCCEEE GELQLFPARQAAAWRGGEVALTRTEFDLLAMLARMPGRVFTRDELLNQVWGYQHFPSTRT CCEEECCCHHHHCCCCCCEEEEEHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCC VDTHVLQLRQKLPDIPIETVRGVGYRLSGGGA HHHHHHHHHHHCCCCCHHHHCCCCEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 1454550; 3036763; 9387221; 9384377; 8045898; 3142862 [H]