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The map label for this gene is dedA [H]

Identifier: 34496798

GI number: 34496798

Start: 1414797

End: 1415441

Strand: Reverse

Name: dedA [H]

Synonym: CV_1343

Alternate gene names: 34496798

Gene position: 1415441-1414797 (Counterclockwise)

Preceding gene: 34496799

Following gene: 34496797

Centisome position: 29.79

GC content: 64.96

Gene sequence:

>645_bases
ATGGAAGCCATCACCTTTCTGATCGACTTCATCCTGCACATCGACGCCCACCTGACCCAGCTGGTGGCCGCCTACGGCCC
CTGGGTCTACGCCATCCTGTTCCTGATCGTGTTCTGCGAGACCGGCCTGGTGGTCACCCCCTTCCTGCCCGGCGACTCGC
TGCTGTTCGTCGCCGGCGCGCTGGCGGCGATGGGCCAGATGAACCCGCACCTGCTGGTCATCCTGCTGATCGTCGCCGCC
ATCCTGGGCGATGCCACCAACTACGCGATCGGCCGCAACGTCGGCATGCGGCTGTTCGACATGTTCCCGCGCATCCTGAA
GCCGCAGTACCTGGAGAAGACCCACGCCTTCTACGAGCGCCACGGCGGCAAGACCATCATCTTCGCCCGCTTCGTGCCCA
TCGTGCGCACCTTCGCGCCGTTCGTGGCCGGCATCGGCAAGATGCACTACCCGCAGTTCCTGCGGTACAACGTGGTGGGC
GCCGTCGCCTGGGTGGTCGGCTTCACTTACGCCGGCTACTTCTTCGGCAACCTGCCCTTCGTGCGCAAGAACCTGGAGCT
GCTGATCTTCGGCATCATCTTCGTCTCCTTCCTGCCGGGGCTGATCGAAATCTGGCGCCACAAGCGCGCGGCCACCCGCG
GCTGA

Upstream 100 bases:

>100_bases
AACAAAAAGAGGAAGCGGTGGTCTGATCATCGCCTTCTGAACGACTGGCCGGCTCGTCCGGCCAGTTTCGCGTCTGCCCA
CCTAGCTCATAACGGAAATC

Downstream 100 bases:

>100_bases
TCCGTAGTAGAATCGACAAGGCCGCCGCAGCGCGGCCTTTCGTTTTTGATATTTCCGCGACGCCGCCCATGACACGCATC
CAACGCCTGCCCGACCACCT

Product: DedA family protein

Products: NA

Alternate protein names: Protein DSG-1 [H]

Number of amino acids: Translated: 214; Mature: 214

Protein sequence:

>214_residues
MEAITFLIDFILHIDAHLTQLVAAYGPWVYAILFLIVFCETGLVVTPFLPGDSLLFVAGALAAMGQMNPHLLVILLIVAA
ILGDATNYAIGRNVGMRLFDMFPRILKPQYLEKTHAFYERHGGKTIIFARFVPIVRTFAPFVAGIGKMHYPQFLRYNVVG
AVAWVVGFTYAGYFFGNLPFVRKNLELLIFGIIFVSFLPGLIEIWRHKRAATRG

Sequences:

>Translated_214_residues
MEAITFLIDFILHIDAHLTQLVAAYGPWVYAILFLIVFCETGLVVTPFLPGDSLLFVAGALAAMGQMNPHLLVILLIVAA
ILGDATNYAIGRNVGMRLFDMFPRILKPQYLEKTHAFYERHGGKTIIFARFVPIVRTFAPFVAGIGKMHYPQFLRYNVVG
AVAWVVGFTYAGYFFGNLPFVRKNLELLIFGIIFVSFLPGLIEIWRHKRAATRG
>Mature_214_residues
MEAITFLIDFILHIDAHLTQLVAAYGPWVYAILFLIVFCETGLVVTPFLPGDSLLFVAGALAAMGQMNPHLLVILLIVAA
ILGDATNYAIGRNVGMRLFDMFPRILKPQYLEKTHAFYERHGGKTIIFARFVPIVRTFAPFVAGIGKMHYPQFLRYNVVG
AVAWVVGFTYAGYFFGNLPFVRKNLELLIFGIIFVSFLPGLIEIWRHKRAATRG

Specific function: Unknown

COG id: COG0586

COG function: function code S; Uncharacterized membrane-associated protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dedA family [H]

Homologues:

Organism=Escherichia coli, GI1788656, Length=210, Percent_Identity=68.0952380952381, Blast_Score=284, Evalue=3e-78,
Organism=Escherichia coli, GI1789481, Length=156, Percent_Identity=35.8974358974359, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1789384, Length=179, Percent_Identity=32.9608938547486, Blast_Score=90, Evalue=1e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 24011; Mature: 24011

Theoretical pI: Translated: 9.89; Mature: 9.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEAITFLIDFILHIDAHLTQLVAAYGPWVYAILFLIVFCETGLVVTPFLPGDSLLFVAGA
CHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHH
LAAMGQMNPHLLVILLIVAAILGDATNYAIGRNVGMRLFDMFPRILKPQYLEKTHAFYER
HHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
HGGKTIIFARFVPIVRTFAPFVAGIGKMHYPQFLRYNVVGAVAWVVGFTYAGYFFGNLPF
CCCCEEHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
VRKNLELLIFGIIFVSFLPGLIEIWRHKRAATRG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MEAITFLIDFILHIDAHLTQLVAAYGPWVYAILFLIVFCETGLVVTPFLPGDSLLFVAGA
CHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHH
LAAMGQMNPHLLVILLIVAAILGDATNYAIGRNVGMRLFDMFPRILKPQYLEKTHAFYER
HHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
HGGKTIIFARFVPIVRTFAPFVAGIGKMHYPQFLRYNVVGAVAWVVGFTYAGYFFGNLPF
CCCCEEHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
VRKNLELLIFGIIFVSFLPGLIEIWRHKRAATRG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]