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The map label for this gene is secF [H]

Identifier: 34496799

GI number: 34496799

Start: 1415516

End: 1416451

Strand: Reverse

Name: secF [H]

Synonym: CV_1344

Alternate gene names: 34496799

Gene position: 1416451-1415516 (Counterclockwise)

Preceding gene: 34496800

Following gene: 34496798

Centisome position: 29.81

GC content: 64.1

Gene sequence:

>936_bases
ATGGAGCTTTTCCGCATCAAACGGGACATCCCGTTCATGAGCTACGGCAGGCTCACCACGGCCATTTCGCTGGTGACCTT
CATCCTCGCCGTGTTTTTCCTGGCCACCCGCGGCCTGAACTTCAGCGTGGAGTTCACCGGCGGCACCGTGCTGGAAGTGC
AGTACCAGCAATCGGCCAACCTGGACCAGGTGCGCGAGAAGGTGGACGCGCTGAAGCTGGGCGAGTCCACCGTGCAGAAT
CTGGGCACCAGCCGCGACGTGATGATCCGCCTGCCCAACAAGCCGGGCACCAGCACCGCCCAGCTGTCCGACAAGGTGAT
GGGCCAGCTCAAGGCCGCCGACCCGACCGTGCAGCTGCGCAAGGTGGACTTCGTCGGCCCCAGCGTCGGCGAGGAGCTGG
TCACCCACGGCCTGACCGCGGTGATCCTGGTGTGCGTGGGCATCATGCTCTACCTGGCCATCCGCTTCGAGTGGCGTTTC
GCCGTGGCGGCCATCATCGCCAACATGCACGACGTGGTGATCATCCTCGGCTGCTTCGCCTTCTTCCGCTGGGAGTTCTC
GCTGACCGTGCTGGCCGGCATCCTGGCGGTGCTGGGCTACTCGGTGAACGAGTCGGTGGTGGTGTTCGACCGGATCCGCG
AAAACTTCCGCAAGCCGGGCATGCGCGGCCACGCGGTGGCCGAAGTGATCGACAACGCCATCACCTCCACCATGAGCCGC
ACCATCATCACCCACTTCTCCACCGAGATGATGGTGGTGTCGATGCTGGTGTTCGGCGGCCCGGCTCTGCACGGCTTCGC
GATGGCGCTGACCATCGGCATCGTGTTCGGCATCTACTCATCGGTGCTGGTGGCCAGCCCGATCGCGCTGTGGCTGGGCG
TGAAGCGCGAGCACATGATCAAGCCGGTGAAACAAAAAGAGGAAGCGGTGGTCTGA

Upstream 100 bases:

>100_bases
GGTGTCGCGCGGCTTGGTGCACCTGTGGTACGGCCGTCGCCGCAAACTGACCTCGCTGGCCATCGGCCAGGTGTGGAAAC
CGGAAAACAAGGGCTAAACC

Downstream 100 bases:

>100_bases
TCATCGCCTTCTGAACGACTGGCCGGCTCGTCCGGCCAGTTTCGCGTCTGCCCACCTAGCTCATAACGGAAATCATGGAA
GCCATCACCTTTCTGATCGA

Product: preprotein translocase subunit SecF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 311; Mature: 311

Protein sequence:

>311_residues
MELFRIKRDIPFMSYGRLTTAISLVTFILAVFFLATRGLNFSVEFTGGTVLEVQYQQSANLDQVREKVDALKLGESTVQN
LGTSRDVMIRLPNKPGTSTAQLSDKVMGQLKAADPTVQLRKVDFVGPSVGEELVTHGLTAVILVCVGIMLYLAIRFEWRF
AVAAIIANMHDVVIILGCFAFFRWEFSLTVLAGILAVLGYSVNESVVVFDRIRENFRKPGMRGHAVAEVIDNAITSTMSR
TIITHFSTEMMVVSMLVFGGPALHGFAMALTIGIVFGIYSSVLVASPIALWLGVKREHMIKPVKQKEEAVV

Sequences:

>Translated_311_residues
MELFRIKRDIPFMSYGRLTTAISLVTFILAVFFLATRGLNFSVEFTGGTVLEVQYQQSANLDQVREKVDALKLGESTVQN
LGTSRDVMIRLPNKPGTSTAQLSDKVMGQLKAADPTVQLRKVDFVGPSVGEELVTHGLTAVILVCVGIMLYLAIRFEWRF
AVAAIIANMHDVVIILGCFAFFRWEFSLTVLAGILAVLGYSVNESVVVFDRIRENFRKPGMRGHAVAEVIDNAITSTMSR
TIITHFSTEMMVVSMLVFGGPALHGFAMALTIGIVFGIYSSVLVASPIALWLGVKREHMIKPVKQKEEAVV
>Mature_311_residues
MELFRIKRDIPFMSYGRLTTAISLVTFILAVFFLATRGLNFSVEFTGGTVLEVQYQQSANLDQVREKVDALKLGESTVQN
LGTSRDVMIRLPNKPGTSTAQLSDKVMGQLKAADPTVQLRKVDFVGPSVGEELVTHGLTAVILVCVGIMLYLAIRFEWRF
AVAAIIANMHDVVIILGCFAFFRWEFSLTVLAGILAVLGYSVNESVVVFDRIRENFRKPGMRGHAVAEVIDNAITSTMSR
TIITHFSTEMMVVSMLVFGGPALHGFAMALTIGIVFGIYSSVLVASPIALWLGVKREHMIKPVKQKEEAVV

Specific function: Involved in protein export [H]

COG id: COG0341

COG function: function code U; Preprotein translocase subunit SecF

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786610, Length=300, Percent_Identity=39, Blast_Score=234, Evalue=8e-63,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645
- InterPro:   IPR005665 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 34235; Mature: 34235

Theoretical pI: Translated: 9.09; Mature: 9.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELFRIKRDIPFMSYGRLTTAISLVTFILAVFFLATRGLNFSVEFTGGTVLEVQYQQSAN
CCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEEEECCCCC
LDQVREKVDALKLGESTVQNLGTSRDVMIRLPNKPGTSTAQLSDKVMGQLKAADPTVQLR
HHHHHHHHHHHHHCHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEE
KVDFVGPSVGEELVTHGLTAVILVCVGIMLYLAIRFEWRFAVAAIIANMHDVVIILGCFA
EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FFRWEFSLTVLAGILAVLGYSVNESVVVFDRIRENFRKPGMRGHAVAEVIDNAITSTMSR
HHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
TIITHFSTEMMVVSMLVFGGPALHGFAMALTIGIVFGIYSSVLVASPIALWLGVKREHMI
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
KPVKQKEEAVV
CCHHHHHCCCC
>Mature Secondary Structure
MELFRIKRDIPFMSYGRLTTAISLVTFILAVFFLATRGLNFSVEFTGGTVLEVQYQQSAN
CCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEEEECCCCC
LDQVREKVDALKLGESTVQNLGTSRDVMIRLPNKPGTSTAQLSDKVMGQLKAADPTVQLR
HHHHHHHHHHHHHCHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEE
KVDFVGPSVGEELVTHGLTAVILVCVGIMLYLAIRFEWRFAVAAIIANMHDVVIILGCFA
EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FFRWEFSLTVLAGILAVLGYSVNESVVVFDRIRENFRKPGMRGHAVAEVIDNAITSTMSR
HHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
TIITHFSTEMMVVSMLVFGGPALHGFAMALTIGIVFGIYSSVLVASPIALWLGVKREHMI
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
KPVKQKEEAVV
CCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]