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The map label for this gene is yhjC [C]

Identifier: 34496737

GI number: 34496737

Start: 1348836

End: 1349762

Strand: Reverse

Name: yhjC [C]

Synonym: CV_1282

Alternate gene names: 34496737

Gene position: 1349762-1348836 (Counterclockwise)

Preceding gene: 34496748

Following gene: 34496735

Centisome position: 28.41

GC content: 71.84

Gene sequence:

>927_bases
ATGAAGCGACTCCCCGATCTGGAAGCCTGGGCCATCTTCGCCAAAGTGGCCGAATGCGGCTCCTTCGCCCGCGCGGCGGC
CGAACTGGCGCTGTCCCAGGGCACCGTGTCCAAGGCGGTGACCCGGCTGGAAGCGCGGATGAAAACCACGCTGCTGCACC
GCACCTCGCGCCGGCTGGCGCTGACGGCGGCCGGCGACGCCGCGCTGGAGCGCGCGGCGCGCATCCTGGCGGAAGGCGAG
GCGGTGGAGGCAGACGTCGCGGAACAATCCGGCAGCCTGCGCGGCAGGGTGCGCGTCGCCGCGCCGATGTCCTTCGGCAT
CTCCCACCTGGCGCCGCTGCTGCCGGAGTTCATGGCGCGTCATCCCGAGGTGGAGCTCGATTTTCACTTCAGCGACGAAC
AGGTGGACCTGGTGGCGCAGCGGATGGACCTGGCCCTGCGCATCGCCTCGCCGGCCGACTCCAGCCTGCTGGCCCGGCGG
CTGTGCGCGGTGCGCATCCTGCTGGTCGGCGCGCCCGGGTATTTCGAGCGCCATGGCAGACCGGAGCACCCGAGCGAGCT
GGCCCACCACCGCGCCTTGCAGTACAGCAACGCGCCAGGCCGCCACTGGCGTTTCCGGCATGCGGAAGAGGGGGAGTTCG
CGCTGGAGGCGCCGTCGCCGCTGCGCGTCAACAACGCCGAGGCGCTGACCCCGGCGCTGAGGGCCGGCCTGGGACTGGCG
CTGCAGCCGGAATTCCTGGTCTGGGAAGACCTGCGGGCGGGTCGGCTGGAAACGGCGATGGCGGGTTGGGAAGTCGATCC
GATCGCGCTCTACATCCTGACGCCGCCCGGACGCGGCCGGCCGGCGCGGGTGCAGGCGCTGATAGCCTATCTGGCGGAAA
AACTGGCCGGCGCGCCCTGGGTGCGGGCGGAAGACCCCACCGGCTGA

Upstream 100 bases:

>100_bases
TTGAATAGCATCATTTCTATTTTTATCATGATCAATGCGCCATCCTGGCAGTTGACTGATAGAATCGGCGCGTATCTCCT
CTCCCTATTCCGGCATGCAC

Downstream 100 bases:

>100_bases
CAGGCAAAAAAGCCCCGCTCAAGGCGGGGCGGATATGCCGAGACGGTGGCCTTACAGATCGTCGGCGGTGAAGAACAGCG
GAATGCCGTCGCGGCTTTCC

Product: transcriptional regulator

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 308; Mature: 308

Protein sequence:

>308_residues
MKRLPDLEAWAIFAKVAECGSFARAAAELALSQGTVSKAVTRLEARMKTTLLHRTSRRLALTAAGDAALERAARILAEGE
AVEADVAEQSGSLRGRVRVAAPMSFGISHLAPLLPEFMARHPEVELDFHFSDEQVDLVAQRMDLALRIASPADSSLLARR
LCAVRILLVGAPGYFERHGRPEHPSELAHHRALQYSNAPGRHWRFRHAEEGEFALEAPSPLRVNNAEALTPALRAGLGLA
LQPEFLVWEDLRAGRLETAMAGWEVDPIALYILTPPGRGRPARVQALIAYLAEKLAGAPWVRAEDPTG

Sequences:

>Translated_308_residues
MKRLPDLEAWAIFAKVAECGSFARAAAELALSQGTVSKAVTRLEARMKTTLLHRTSRRLALTAAGDAALERAARILAEGE
AVEADVAEQSGSLRGRVRVAAPMSFGISHLAPLLPEFMARHPEVELDFHFSDEQVDLVAQRMDLALRIASPADSSLLARR
LCAVRILLVGAPGYFERHGRPEHPSELAHHRALQYSNAPGRHWRFRHAEEGEFALEAPSPLRVNNAEALTPALRAGLGLA
LQPEFLVWEDLRAGRLETAMAGWEVDPIALYILTPPGRGRPARVQALIAYLAEKLAGAPWVRAEDPTG
>Mature_308_residues
MKRLPDLEAWAIFAKVAECGSFARAAAELALSQGTVSKAVTRLEARMKTTLLHRTSRRLALTAAGDAALERAARILAEGE
AVEADVAEQSGSLRGRVRVAAPMSFGISHLAPLLPEFMARHPEVELDFHFSDEQVDLVAQRMDLALRIASPADSSLLARR
LCAVRILLVGAPGYFERHGRPEHPSELAHHRALQYSNAPGRHWRFRHAEEGEFALEAPSPLRVNNAEALTPALRAGLGLA
LQPEFLVWEDLRAGRLETAMAGWEVDPIALYILTPPGRGRPARVQALIAYLAEKLAGAPWVRAEDPTG

Specific function: Unknown

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=288, Percent_Identity=32.6388888888889, Blast_Score=147, Evalue=8e-37,
Organism=Escherichia coli, GI1786401, Length=298, Percent_Identity=32.2147651006711, Blast_Score=145, Evalue=5e-36,
Organism=Escherichia coli, GI1789639, Length=287, Percent_Identity=28.9198606271777, Blast_Score=134, Evalue=8e-33,
Organism=Escherichia coli, GI1789440, Length=247, Percent_Identity=29.9595141700405, Blast_Score=124, Evalue=5e-30,
Organism=Escherichia coli, GI87081978, Length=298, Percent_Identity=29.1946308724832, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI1787128, Length=289, Percent_Identity=26.9896193771626, Blast_Score=114, Evalue=6e-27,
Organism=Escherichia coli, GI1787589, Length=248, Percent_Identity=29.8387096774194, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1789173, Length=297, Percent_Identity=27.2727272727273, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1788706, Length=291, Percent_Identity=27.4914089347079, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1790011, Length=290, Percent_Identity=23.448275862069, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI157672245, Length=138, Percent_Identity=33.3333333333333, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1788748, Length=129, Percent_Identity=34.8837209302326, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1790262, Length=249, Percent_Identity=28.9156626506024, Blast_Score=62, Evalue=5e-11,
Organism=Escherichia coli, GI1787601, Length=114, Percent_Identity=30.7017543859649, Blast_Score=62, Evalue=6e-11,
Organism=Escherichia coli, GI1786448, Length=291, Percent_Identity=24.7422680412371, Blast_Score=61, Evalue=8e-11,
Organism=Escherichia coli, GI1790208, Length=127, Percent_Identity=30.7086614173228, Blast_Score=61, Evalue=8e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33609; Mature: 33609

Theoretical pI: Translated: 7.37; Mature: 7.37

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRLPDLEAWAIFAKVAECGSFARAAAELALSQGTVSKAVTRLEARMKTTLLHRTSRRLA
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCEEE
LTAAGDAALERAARILAEGEAVEADVAEQSGSLRGRVRVAAPMSFGISHLAPLLPEFMAR
EEECCHHHHHHHHHHHHCCCHHHHHHHHCCCCCCEEEEEECCHHHCHHHHHHHHHHHHHC
HPEVELDFHFSDEQVDLVAQRMDLALRIASPADSSLLARRLCAVRILLVGAPGYFERHGR
CCCEEEEEEECCHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHEECCCCHHHHCCC
PEHPSELAHHRALQYSNAPGRHWRFRHAEEGEFALEAPSPLRVNNAEALTPALRAGLGLA
CCCHHHHHHHHHHHCCCCCCCCEECCCCCCCCEEEECCCCCEECCHHHHHHHHHHCCCCE
LQPEFLVWEDLRAGRLETAMAGWEVDPIALYILTPPGRGRPARVQALIAYLAEKLAGAPW
ECCCEEEHHHHCCCCHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCC
VRAEDPTG
CCCCCCCC
>Mature Secondary Structure
MKRLPDLEAWAIFAKVAECGSFARAAAELALSQGTVSKAVTRLEARMKTTLLHRTSRRLA
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCEEE
LTAAGDAALERAARILAEGEAVEADVAEQSGSLRGRVRVAAPMSFGISHLAPLLPEFMAR
EEECCHHHHHHHHHHHHCCCHHHHHHHHCCCCCCEEEEEECCHHHCHHHHHHHHHHHHHC
HPEVELDFHFSDEQVDLVAQRMDLALRIASPADSSLLARRLCAVRILLVGAPGYFERHGR
CCCEEEEEEECCHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHEECCCCHHHHCCC
PEHPSELAHHRALQYSNAPGRHWRFRHAEEGEFALEAPSPLRVNNAEALTPALRAGLGLA
CCCHHHHHHHHHHHCCCCCCCCEECCCCCCCCEEEECCCCCEECCHHHHHHHHHHCCCCE
LQPEFLVWEDLRAGRLETAMAGWEVDPIALYILTPPGRGRPARVQALIAYLAEKLAGAPW
ECCCEEEHHHHCCCCHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCC
VRAEDPTG
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800 [H]