| Definition | Chromobacterium violaceum ATCC 12472 chromosome, complete genome. |
|---|---|
| Accession | NC_005085 |
| Length | 4,751,080 |
Click here to switch to the map view.
The map label for this gene is arnT [H]
Identifier: 34496616
GI number: 34496616
Start: 1218868
End: 1220355
Strand: Reverse
Name: arnT [H]
Synonym: CV_1161
Alternate gene names: 34496616
Gene position: 1220355-1218868 (Counterclockwise)
Preceding gene: 34496617
Following gene: 34496615
Centisome position: 25.69
GC content: 68.75
Gene sequence:
>1488_bases TTGAAAACAAGTTTACGGATGAATACCGCTGCCACTTCCTCCTGGCGGAAGGCGGCCGGCTACGCCTTGCTGGCGCTGCT GGCCATCCGCCTGCTGGCGCTGTGGGCGATCCCGCTCACCGACACCACCGAGGCCCGCTACGCCGAGATCGCCCGCAAGA TGCTGGAAACCGGCAATTGGGTGACGCCGCTGCACGACTACGGCGTGCCGTTCTGGGCCAAGCCGCCGCTGTCCACCTGG CTGTCCGCAGCCAGCATGGGCCTGTTCGGCGTCAACGAGTTCGCCGCCCGCCTGCCCGCGCTGCTGCTGGCCATCGGCGC GCTGTGGCTGACGGCAGATCTGATGCGCCGCCGCGCCGGCAACGACGCCGCGATGGCCGCCGCGCTGATCTTGGGCGGCG GCCTGCTGTTCTACGGCGCGGCCGGCACCGTGATGACCGATCCCTCGCTGATGTTCTGCGTCACGCTGAGCCAGGTGGCG TTCTGGCATGCGATGAGCGGCGGCGGCCGGCCGTGGCGTTACGCCTTCTTCGCCGGCCTGGGCCTGGGCCTGTTGGCCAA GGGGCCGCTGGCCGTGGTGCTGGTGGGCATGCCCATCTTCGTCTGGGTATTGGTCCGCAATCAATGGAAAGCGCTGTGGC GCGAGCTGCCCTGGATATCCGGCACCCTGCTCGCCGCGGCCATCGCCCTGCCCTGGTACACATGGGCGGAAATCCGCACG CCGGGCTTTCTCAACTACTTCATCATGGGCGAACACGTCAGCCGCTTCCTGGACGCTGGCTGGAAGGGCGACAAGTACGG CTTCGCCCACGCCACGCCGCGCGGCATGATCTGGCCTTATGCGCTGGGCGCGCTGTTTCCATGGTCCATCGCCATGCTGG CCTGGCTGGCCAGCCGGGCGCGCCGACTGCCGGCCATCGTCCGCGCCGGCGAAAACGACGGCTGGCTGCTGTATGTCTCC TTGTGGACCGTGATGACGCTGCTGTTCTTCACGATGTCCGGCAACATCATCTTCCCGTACTCGCTGCCGATGCTGCCCGG CGCGGCGCTGCTGATGGCGGAGCTGTGGCATCGCGGCCGCGACGAGCGCGCCGGCCGCGCGCTGCCGTGGCTGGCGCTGT CCTCCGGCCTGCTGGTGCTGGCGGCGATCGGCCTGCAATGGCATGACGGCGCCAGATATTTCCGCACCCAGAAGCCGGTG ATAGCCGCCTGGCGCCAGCAGCAGCCCGCGCCGCAGGCGACGCTGTTCTACTGGGACAGCCGCCGCGAGTTCTCCGCGGA GTTCTACAGCCAGGGCCGGGTGCGCACCACCGCCGACGCGCACGCGCTGGCCCCGCAGCTGGCAGCCCATCCGGGCAGCT GGATCGTCACCGAGCAGCGCGACTTCGCCAGCCTGCCGCCGGCCATCGCCGCGGGCTATCTGAAGGCCGGAGAGTTTCCG GTGATGAAAGACAGGATGTTGCTGCTCAAGCCGGCGACAGCCCATTGA
Upstream 100 bases:
>100_bases CGATCCAAGCCAACGCCGCCTCCGGGCGGCGTTTTCGCTGGCGGGACGGAAGACGCCGGTCCCGGTCTGTGATAGCCTTG CGCCGATCCTCTACCCCGTT
Downstream 100 bases:
>100_bases CTGCGAAGACCACCATGACCGACGCACGCAACTTCGTACCGCCCTACCTGCTGGAACTGCACGCCGCCGAACGGCCGGCC GACCCGCTGGTCAGCTGCCT
Product: melitin resistence protein
Products: NA
Alternate protein names: 4-amino-4-deoxy-L-arabinose lipid A transferase; Lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase; Undecaprenyl phosphate-alpha-L-Ara4N transferase [H]
Number of amino acids: Translated: 495; Mature: 495
Protein sequence:
>495_residues MKTSLRMNTAATSSWRKAAGYALLALLAIRLLALWAIPLTDTTEARYAEIARKMLETGNWVTPLHDYGVPFWAKPPLSTW LSAASMGLFGVNEFAARLPALLLAIGALWLTADLMRRRAGNDAAMAAALILGGGLLFYGAAGTVMTDPSLMFCVTLSQVA FWHAMSGGGRPWRYAFFAGLGLGLLAKGPLAVVLVGMPIFVWVLVRNQWKALWRELPWISGTLLAAAIALPWYTWAEIRT PGFLNYFIMGEHVSRFLDAGWKGDKYGFAHATPRGMIWPYALGALFPWSIAMLAWLASRARRLPAIVRAGENDGWLLYVS LWTVMTLLFFTMSGNIIFPYSLPMLPGAALLMAELWHRGRDERAGRALPWLALSSGLLVLAAIGLQWHDGARYFRTQKPV IAAWRQQQPAPQATLFYWDSRREFSAEFYSQGRVRTTADAHALAPQLAAHPGSWIVTEQRDFASLPPAIAAGYLKAGEFP VMKDRMLLLKPATAH
Sequences:
>Translated_495_residues MKTSLRMNTAATSSWRKAAGYALLALLAIRLLALWAIPLTDTTEARYAEIARKMLETGNWVTPLHDYGVPFWAKPPLSTW LSAASMGLFGVNEFAARLPALLLAIGALWLTADLMRRRAGNDAAMAAALILGGGLLFYGAAGTVMTDPSLMFCVTLSQVA FWHAMSGGGRPWRYAFFAGLGLGLLAKGPLAVVLVGMPIFVWVLVRNQWKALWRELPWISGTLLAAAIALPWYTWAEIRT PGFLNYFIMGEHVSRFLDAGWKGDKYGFAHATPRGMIWPYALGALFPWSIAMLAWLASRARRLPAIVRAGENDGWLLYVS LWTVMTLLFFTMSGNIIFPYSLPMLPGAALLMAELWHRGRDERAGRALPWLALSSGLLVLAAIGLQWHDGARYFRTQKPV IAAWRQQQPAPQATLFYWDSRREFSAEFYSQGRVRTTADAHALAPQLAAHPGSWIVTEQRDFASLPPAIAAGYLKAGEFP VMKDRMLLLKPATAH >Mature_495_residues MKTSLRMNTAATSSWRKAAGYALLALLAIRLLALWAIPLTDTTEARYAEIARKMLETGNWVTPLHDYGVPFWAKPPLSTW LSAASMGLFGVNEFAARLPALLLAIGALWLTADLMRRRAGNDAAMAAALILGGGLLFYGAAGTVMTDPSLMFCVTLSQVA FWHAMSGGGRPWRYAFFAGLGLGLLAKGPLAVVLVGMPIFVWVLVRNQWKALWRELPWISGTLLAAAIALPWYTWAEIRT PGFLNYFIMGEHVSRFLDAGWKGDKYGFAHATPRGMIWPYALGALFPWSIAMLAWLASRARRLPAIVRAGENDGWLLYVS LWTVMTLLFFTMSGNIIFPYSLPMLPGAALLMAELWHRGRDERAGRALPWLALSSGLLVLAAIGLQWHDGARYFRTQKPV IAAWRQQQPAPQATLFYWDSRREFSAEFYSQGRVRTTADAHALAPQLAAHPGSWIVTEQRDFASLPPAIAAGYLKAGEFP VMKDRMLLLKPATAH
Specific function: Catalyzes the transfer of the L-Ara4N moiety of the glycolipid undecaprenyl phosphate-alpha-L-Ara4N to lipid A. The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides [H]
COG id: COG1807
COG function: function code M; 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyltransferase 83 family [H]
Homologues:
Organism=Escherichia coli, GI1788591, Length=322, Percent_Identity=28.8819875776398, Blast_Score=100, Evalue=3e-22,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR022839 - InterPro: IPR003342 [H]
Pfam domain/function: PF02366 PMT [H]
EC number: =2.4.2.43 [H]
Molecular weight: Translated: 54722; Mature: 54722
Theoretical pI: Translated: 10.50; Mature: 10.50
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKTSLRMNTAATSSWRKAAGYALLALLAIRLLALWAIPLTDTTEARYAEIARKMLETGNW CCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCC VTPLHDYGVPFWAKPPLSTWLSAASMGLFGVNEFAARLPALLLAIGALWLTADLMRRRAG CCCHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC NDAAMAAALILGGGLLFYGAAGTVMTDPSLMFCVTLSQVAFWHAMSGGGRPWRYAFFAGL CHHHHHHHHHHHCCHHEECCCCCEECCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH GLGLLAKGPLAVVLVGMPIFVWVLVRNQWKALWRELPWISGTLLAAAIALPWYTWAEIRT HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHCC PGFLNYFIMGEHVSRFLDAGWKGDKYGFAHATPRGMIWPYALGALFPWSIAMLAWLASRA CCCEEHEEEHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH RRLPAIVRAGENDGWLLYVSLWTVMTLLFFTMSGNIIFPYSLPMLPGAALLMAELWHRGR HHCCHHEECCCCCCEEEEHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHCCC DERAGRALPWLALSSGLLVLAAIGLQWHDGARYFRTQKPVIAAWRQQQPAPQATLFYWDS CCCCCCCCCHHHHHCCHHHHHHHCCEECCCCHHHHCCCHHHHHHHCCCCCCCEEEEEECC RREFSAEFYSQGRVRTTADAHALAPQLAAHPGSWIVTEQRDFASLPPAIAAGYLKAGEFP CCHHHHHHHHCCCEEECCHHHHHHHHHHCCCCCEEEECCCCHHCCCHHHHHHHHCCCCCC VMKDRMLLLKPATAH CCCCCEEEECCCCCC >Mature Secondary Structure MKTSLRMNTAATSSWRKAAGYALLALLAIRLLALWAIPLTDTTEARYAEIARKMLETGNW CCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCC VTPLHDYGVPFWAKPPLSTWLSAASMGLFGVNEFAARLPALLLAIGALWLTADLMRRRAG CCCHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC NDAAMAAALILGGGLLFYGAAGTVMTDPSLMFCVTLSQVAFWHAMSGGGRPWRYAFFAGL CHHHHHHHHHHHCCHHEECCCCCEECCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH GLGLLAKGPLAVVLVGMPIFVWVLVRNQWKALWRELPWISGTLLAAAIALPWYTWAEIRT HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHCC PGFLNYFIMGEHVSRFLDAGWKGDKYGFAHATPRGMIWPYALGALFPWSIAMLAWLASRA CCCEEHEEEHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH RRLPAIVRAGENDGWLLYVSLWTVMTLLFFTMSGNIIFPYSLPMLPGAALLMAELWHRGR HHCCHHEECCCCCCEEEEHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHCCC DERAGRALPWLALSSGLLVLAAIGLQWHDGARYFRTQKPVIAAWRQQQPAPQATLFYWDS CCCCCCCCCHHHHHCCHHHHHHHCCEECCCCHHHHCCCHHHHHHHCCCCCCCEEEEEECC RREFSAEFYSQGRVRTTADAHALAPQLAAHPGSWIVTEQRDFASLPPAIAAGYLKAGEFP CCHHHHHHHHCCCEEECCHHHHHHHHHHCCCCCEEEECCCCHHCCCHHHHHHHHCCCCCC VMKDRMLLLKPATAH CCCCCEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA