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The map label for this gene is yclF [H]

Identifier: 34496617

GI number: 34496617

Start: 1220469

End: 1221800

Strand: Reverse

Name: yclF [H]

Synonym: CV_1162

Alternate gene names: 34496617

Gene position: 1221800-1220469 (Counterclockwise)

Preceding gene: 34496619

Following gene: 34496616

Centisome position: 25.72

GC content: 63.66

Gene sequence:

>1332_bases
GTGACGGAGATGTGGGAGCGCTTCAGCTACTACGGCATGCGCGCCATCTTCACCCTGTACATGATCAAGGCGCTGCTGTT
CGACAAGGCCCATGCTTCGGACATCTACGGCACCTATACCGGCCTGGTCTATTTCACCCCGCTGATCGGCGGCTACATCG
CCGACCGCTACTGGGGCAACCGCCGCTCCATCCTGGCCGGCGGCGTGCTGATGGCCATCGGCCAGTTCATGCTGTTCTTC
TCCGGCTCGCTGCATGAAACCAATGTCGCCGCCGCCTCCTGGCTGCTGTACGGCGGCCTGGGCATGCTGATCGCCGGCAA
CGGCCTGTTCAAACCGAACATCTCGTCCATGGTCGGCCAGCTGTACGCCCCGGGCGACAAGCGCGTGGACTCCGCCTTCA
CCATCTTCTACATGGGCATCAACACCGGCTCGCTGATCGCGCCGCTGGTTTGCGGCACCCTGGGCGACACCGGCAATCCC
GCCGACTTCAAATGGGGCTTCATGGCCGCCGGCTTCGGCATGCTGCTGTCGCTGGTGGTGTTCACCCTGTTCAAGAACCA
GTACCTGGTGACCCCGGAAGGCAAGCCGATCGGCATGGCGCCCAAGCGTCACCACGACAGCGGCGAAAAAGTGGTGCACG
CGCCGCTGACCAGCATCGAGAAGCAGCGCCTGGCGGTGATCCTGATCGTGTCCGCCTTCGTGATCTTCTTCTGGTCCGCC
TTCGAGCAGGCCGGCGCCTCGCTGACCTTCTTCGCCGAAGAGCAGACCAACCGCAACCTGATGGGCTACGTGATCCCGGC
CTCCTTCTTCCAGTCGCTGAACCCGATTTCGGTGGTGATTTTCGCGCCGATCTTCGCCTGGATCTGGACCAAGCTGGGCA
GCAAGGGCATGGAGCCCTCCTCTCCGGCCAAGATGGCGCTGGGCCTGTTCTTCCTGGCGCTGGGCTATCTAGTGATCGCC
TTCGGCGTCGACGGCCTGGCCCCGGGCGTCAAGGTCAGCATGCTGTGGCTGGTCAGCCTGTACGTGCTGCACACCTTCGG
CGAACTGAGCCTGTCTCCTATCGGCCTGTCGCTGGTGGTGAAGCTGTCCCCGGCCCGCTTCACCGGCCTGATGATGGGCA
TCTGGTTCCTGTCGTCGTCCGCCGCCAACAAGTTCGCGGGCACGCTGTCCGAGCTGTACCCGGACCCGGCCAAGCCGGTG
CCGCACTTCCTCGGCTACGCGGTCACCAATCTGCACGACTTCTTCATGCTGTTCGTGATGATGGCCGGCGCCAGCTCCCT
GGTGCTGTTCGCGCTGTCTTCGGTGCTGAAGAAGATGATGCACGGCCGCTGA

Upstream 100 bases:

>100_bases
AAAAACAAAAAACACCGCTCGTTGCTGGTGATATCTCAAGTCACTCGAAGGAACCCTTATGTCTACACAATCGCATCCCA
AGGGGCTTTATCTGCTCTTT

Downstream 100 bases:

>100_bases
GCCGCCGCTTACCCGATCCAAGCCAACGCCGCCTCCGGGCGGCGTTTTCGCTGGCGGGACGGAAGACGCCGGTCCCGGTC
TGTGATAGCCTTGCGCCGAT

Product: peptide ABC transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 443; Mature: 442

Protein sequence:

>443_residues
MTEMWERFSYYGMRAIFTLYMIKALLFDKAHASDIYGTYTGLVYFTPLIGGYIADRYWGNRRSILAGGVLMAIGQFMLFF
SGSLHETNVAAASWLLYGGLGMLIAGNGLFKPNISSMVGQLYAPGDKRVDSAFTIFYMGINTGSLIAPLVCGTLGDTGNP
ADFKWGFMAAGFGMLLSLVVFTLFKNQYLVTPEGKPIGMAPKRHHDSGEKVVHAPLTSIEKQRLAVILIVSAFVIFFWSA
FEQAGASLTFFAEEQTNRNLMGYVIPASFFQSLNPISVVIFAPIFAWIWTKLGSKGMEPSSPAKMALGLFFLALGYLVIA
FGVDGLAPGVKVSMLWLVSLYVLHTFGELSLSPIGLSLVVKLSPARFTGLMMGIWFLSSSAANKFAGTLSELYPDPAKPV
PHFLGYAVTNLHDFFMLFVMMAGASSLVLFALSSVLKKMMHGR

Sequences:

>Translated_443_residues
MTEMWERFSYYGMRAIFTLYMIKALLFDKAHASDIYGTYTGLVYFTPLIGGYIADRYWGNRRSILAGGVLMAIGQFMLFF
SGSLHETNVAAASWLLYGGLGMLIAGNGLFKPNISSMVGQLYAPGDKRVDSAFTIFYMGINTGSLIAPLVCGTLGDTGNP
ADFKWGFMAAGFGMLLSLVVFTLFKNQYLVTPEGKPIGMAPKRHHDSGEKVVHAPLTSIEKQRLAVILIVSAFVIFFWSA
FEQAGASLTFFAEEQTNRNLMGYVIPASFFQSLNPISVVIFAPIFAWIWTKLGSKGMEPSSPAKMALGLFFLALGYLVIA
FGVDGLAPGVKVSMLWLVSLYVLHTFGELSLSPIGLSLVVKLSPARFTGLMMGIWFLSSSAANKFAGTLSELYPDPAKPV
PHFLGYAVTNLHDFFMLFVMMAGASSLVLFALSSVLKKMMHGR
>Mature_442_residues
TEMWERFSYYGMRAIFTLYMIKALLFDKAHASDIYGTYTGLVYFTPLIGGYIADRYWGNRRSILAGGVLMAIGQFMLFFS
GSLHETNVAAASWLLYGGLGMLIAGNGLFKPNISSMVGQLYAPGDKRVDSAFTIFYMGINTGSLIAPLVCGTLGDTGNPA
DFKWGFMAAGFGMLLSLVVFTLFKNQYLVTPEGKPIGMAPKRHHDSGEKVVHAPLTSIEKQRLAVILIVSAFVIFFWSAF
EQAGASLTFFAEEQTNRNLMGYVIPASFFQSLNPISVVIFAPIFAWIWTKLGSKGMEPSSPAKMALGLFFLALGYLVIAF
GVDGLAPGVKVSMLWLVSLYVLHTFGELSLSPIGLSLVVKLSPARFTGLMMGIWFLSSSAANKFAGTLSELYPDPAKPVP
HFLGYAVTNLHDFFMLFVMMAGASSLVLFALSSVLKKMMHGR

Specific function: Unknown

COG id: COG3104

COG function: function code E; Dipeptide/tripeptide permease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the PTR2/POT transporter (TC 2.A.17) family [H]

Homologues:

Organism=Homo sapiens, GI226371746, Length=345, Percent_Identity=29.5652173913043, Blast_Score=116, Evalue=5e-26,
Organism=Homo sapiens, GI4827008, Length=358, Percent_Identity=28.7709497206704, Blast_Score=115, Evalue=9e-26,
Organism=Homo sapiens, GI226371748, Length=338, Percent_Identity=29.2899408284024, Blast_Score=106, Evalue=4e-23,
Organism=Escherichia coli, GI1789911, Length=448, Percent_Identity=31.0267857142857, Blast_Score=197, Evalue=1e-51,
Organism=Escherichia coli, GI1787922, Length=433, Percent_Identity=29.3302540415704, Blast_Score=188, Evalue=5e-49,
Organism=Escherichia coli, GI1790572, Length=446, Percent_Identity=28.47533632287, Blast_Score=186, Evalue=2e-48,
Organism=Escherichia coli, GI1786927, Length=463, Percent_Identity=27.2138228941685, Blast_Score=185, Evalue=5e-48,
Organism=Caenorhabditis elegans, GI71987453, Length=353, Percent_Identity=27.7620396600567, Blast_Score=103, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI17569141, Length=364, Percent_Identity=24.7252747252747, Blast_Score=102, Evalue=3e-22,
Organism=Caenorhabditis elegans, GI17541704, Length=152, Percent_Identity=34.2105263157895, Blast_Score=73, Evalue=4e-13,
Organism=Saccharomyces cerevisiae, GI6322946, Length=474, Percent_Identity=24.6835443037975, Blast_Score=84, Evalue=6e-17,
Organism=Drosophila melanogaster, GI24639583, Length=312, Percent_Identity=27.5641025641026, Blast_Score=106, Evalue=4e-23,
Organism=Drosophila melanogaster, GI24639585, Length=312, Percent_Identity=27.5641025641026, Blast_Score=105, Evalue=4e-23,
Organism=Drosophila melanogaster, GI24639581, Length=312, Percent_Identity=27.5641025641026, Blast_Score=105, Evalue=6e-23,
Organism=Drosophila melanogaster, GI28571098, Length=310, Percent_Identity=26.4516129032258, Blast_Score=99, Evalue=5e-21,
Organism=Drosophila melanogaster, GI28571102, Length=310, Percent_Identity=26.4516129032258, Blast_Score=98, Evalue=1e-20,
Organism=Drosophila melanogaster, GI28571100, Length=310, Percent_Identity=26.4516129032258, Blast_Score=98, Evalue=1e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR016196
- InterPro:   IPR000109
- InterPro:   IPR005279
- InterPro:   IPR018456 [H]

Pfam domain/function: PF00854 PTR2 [H]

EC number: NA

Molecular weight: Translated: 48393; Mature: 48262

Theoretical pI: Translated: 9.60; Mature: 9.60

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
5.2 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
5.0 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTEMWERFSYYGMRAIFTLYMIKALLFDKAHASDIYGTYTGLVYFTPLIGGYIADRYWGN
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
RRSILAGGVLMAIGQFMLFFSGSLHETNVAAASWLLYGGLGMLIAGNGLFKPNISSMVGQ
CCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHH
LYAPGDKRVDSAFTIFYMGINTGSLIAPLVCGTLGDTGNPADFKWGFMAAGFGMLLSLVV
HCCCCCCCCCCEEEEEEEECCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHH
FTLFKNQYLVTPEGKPIGMAPKRHHDSGEKVVHAPLTSIEKQRLAVILIVSAFVIFFWSA
HHHHCCCEEECCCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHH
FEQAGASLTFFAEEQTNRNLMGYVIPASFFQSLNPISVVIFAPIFAWIWTKLGSKGMEPS
HHHCCCEEEEEECCCCCCCEEEEEECHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCC
SPAKMALGLFFLALGYLVIAFGVDGLAPGVKVSMLWLVSLYVLHTFGELSLSPIGLSLVV
CHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEE
KLSPARFTGLMMGIWFLSSSAANKFAGTLSELYPDPAKPVPHFLGYAVTNLHDFFMLFVM
EECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
MAGASSLVLFALSSVLKKMMHGR
HHCCHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TEMWERFSYYGMRAIFTLYMIKALLFDKAHASDIYGTYTGLVYFTPLIGGYIADRYWGN
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
RRSILAGGVLMAIGQFMLFFSGSLHETNVAAASWLLYGGLGMLIAGNGLFKPNISSMVGQ
CCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHH
LYAPGDKRVDSAFTIFYMGINTGSLIAPLVCGTLGDTGNPADFKWGFMAAGFGMLLSLVV
HCCCCCCCCCCEEEEEEEECCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHH
FTLFKNQYLVTPEGKPIGMAPKRHHDSGEKVVHAPLTSIEKQRLAVILIVSAFVIFFWSA
HHHHCCCEEECCCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHH
FEQAGASLTFFAEEQTNRNLMGYVIPASFFQSLNPISVVIFAPIFAWIWTKLGSKGMEPS
HHHCCCEEEEEECCCCCCCEEEEEECHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCC
SPAKMALGLFFLALGYLVIAFGVDGLAPGVKVSMLWLVSLYVLHTFGELSLSPIGLSLVV
CHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEE
KLSPARFTGLMMGIWFLSSSAANKFAGTLSELYPDPAKPVPHFLGYAVTNLHDFFMLFVM
EECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
MAGASSLVLFALSSVLKKMMHGR
HHCCHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969502; 9384377 [H]