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The map label for this gene is yhjC [H]

Identifier: 34496588

GI number: 34496588

Start: 1186898

End: 1187863

Strand: Reverse

Name: yhjC [H]

Synonym: CV_1133

Alternate gene names: 34496588

Gene position: 1187863-1186898 (Counterclockwise)

Preceding gene: 34496594

Following gene: 34496587

Centisome position: 25.0

GC content: 68.12

Gene sequence:

>966_bases
ATGAGAACAGATCACTTACCCGATGCCCAGGCCCTGCTCGCCTTCGACGCGCTGGTCCGCCGCGGCAGCTTCACCGCCGC
CGCCGAAGAGCTGGATTGCACCAAGAGCCGGGTCAGCCAACTGGTGAAAGCGCTGGAAAAACAGTTCGGCACCGTGCTGG
TGTTGCGCAACACCCGCCGCGTGGCGCTGACCGAAACCGGCCAGCGGCTGGCCGTGCATGCCCGCGAGCTGCGCAGCCTG
CTGGAGCGCGCGCGCATCGACATCAACGAGGCCGAAGGCGAAGTCAGCGGCCCGCTGGTGATCAGTTCCATCACCTCCTT
CGCCCAATACCTGCTGGCGCCGATACTGGCCGAGCTGGCGGTGCTGCACCCCTGCCTGCAACTGAAGCTGCAGGTGGAGA
ACCGGCTGCAGGACCCGATCGCCGAAGGGCTGGATTTCTGCATCCGCACCCGCAACGTCCACGACGACGCGCTGGTGGCC
AAGCCGCTGGGCCTGGTGCGCGAATGGGCGTTCGCCTCGCCGGACTACCTGGCCAAGGCGCCGCCGCTCGCCACGCCCGA
CGACCTGCCGCTGCACCGCATCCTGCTCGACACCAGCCGGCCCAAGCTGCGCGACACGCCGGAATGGCTGTTGGAAAAGG
ACGGTCAGCAGAAGCAGGTACGGGTGCAGCCGGTGCTCAGCAGCCACCAGTACGCGCCGCTGCTGTCCGCCGCCATCGCC
GGCAGCGGCGTCGCGCTGCTGCCCGCCTACGTCGCCAGCGAGCATCTGAGAAGCGGCCGCCTGGTGCCGGTGCTGCCGGG
CTGGAGCCACGATTGCTGGCCGGTCTACCTGGTCTATCCCTACCGCCATCCGCTGCCGCGCAAGTACGAGGCCTTCATCC
AGCACGTGGTGCCACGGATGCGCGCCTTGCTGGAGGCAGGCATTGATCCAGGCCAAGGCGGCATCCGGCCGTCATCGCCA
GAATGA

Upstream 100 bases:

>100_bases
TCATCCCCGCCTCCATTGTTCAATCATCAATCATGAATCGCATGCTACCTGGGCAATAAACATTGAAAAACCGCATTTCC
CATGACACACTGTTCATTAA

Downstream 100 bases:

>100_bases
GCGCCATTCGCGCCGGCTCAAGGCCGGCCTGACAAGGAGAATGCAATGGAACACCGCGACATCGTCATCGTCGGCGGCGG
CATGGTGGGCAGCGCGCTGG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 321; Mature: 321

Protein sequence:

>321_residues
MRTDHLPDAQALLAFDALVRRGSFTAAAEELDCTKSRVSQLVKALEKQFGTVLVLRNTRRVALTETGQRLAVHARELRSL
LERARIDINEAEGEVSGPLVISSITSFAQYLLAPILAELAVLHPCLQLKLQVENRLQDPIAEGLDFCIRTRNVHDDALVA
KPLGLVREWAFASPDYLAKAPPLATPDDLPLHRILLDTSRPKLRDTPEWLLEKDGQQKQVRVQPVLSSHQYAPLLSAAIA
GSGVALLPAYVASEHLRSGRLVPVLPGWSHDCWPVYLVYPYRHPLPRKYEAFIQHVVPRMRALLEAGIDPGQGGIRPSSP
E

Sequences:

>Translated_321_residues
MRTDHLPDAQALLAFDALVRRGSFTAAAEELDCTKSRVSQLVKALEKQFGTVLVLRNTRRVALTETGQRLAVHARELRSL
LERARIDINEAEGEVSGPLVISSITSFAQYLLAPILAELAVLHPCLQLKLQVENRLQDPIAEGLDFCIRTRNVHDDALVA
KPLGLVREWAFASPDYLAKAPPLATPDDLPLHRILLDTSRPKLRDTPEWLLEKDGQQKQVRVQPVLSSHQYAPLLSAAIA
GSGVALLPAYVASEHLRSGRLVPVLPGWSHDCWPVYLVYPYRHPLPRKYEAFIQHVVPRMRALLEAGIDPGQGGIRPSSP
E
>Mature_321_residues
MRTDHLPDAQALLAFDALVRRGSFTAAAEELDCTKSRVSQLVKALEKQFGTVLVLRNTRRVALTETGQRLAVHARELRSL
LERARIDINEAEGEVSGPLVISSITSFAQYLLAPILAELAVLHPCLQLKLQVENRLQDPIAEGLDFCIRTRNVHDDALVA
KPLGLVREWAFASPDYLAKAPPLATPDDLPLHRILLDTSRPKLRDTPEWLLEKDGQQKQVRVQPVLSSHQYAPLLSAAIA
GSGVALLPAYVASEHLRSGRLVPVLPGWSHDCWPVYLVYPYRHPLPRKYEAFIQHVVPRMRALLEAGIDPGQGGIRPSSP
E

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=298, Percent_Identity=33.5570469798658, Blast_Score=136, Evalue=2e-33,
Organism=Escherichia coli, GI1789440, Length=283, Percent_Identity=31.4487632508834, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI1789173, Length=260, Percent_Identity=33.4615384615385, Blast_Score=108, Evalue=6e-25,
Organism=Escherichia coli, GI1786401, Length=293, Percent_Identity=30.3754266211604, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI1789639, Length=286, Percent_Identity=29.3706293706294, Blast_Score=101, Evalue=5e-23,
Organism=Escherichia coli, GI87081978, Length=281, Percent_Identity=32.0284697508897, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1787589, Length=294, Percent_Identity=25.8503401360544, Blast_Score=98, Evalue=8e-22,
Organism=Escherichia coli, GI1787128, Length=287, Percent_Identity=25.4355400696864, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1788706, Length=135, Percent_Identity=31.8518518518519, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI145693105, Length=159, Percent_Identity=25.1572327044025, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI87082132, Length=260, Percent_Identity=23.8461538461538, Blast_Score=62, Evalue=7e-11,
Organism=Escherichia coli, GI1786713, Length=268, Percent_Identity=27.2388059701493, Blast_Score=61, Evalue=8e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 35607; Mature: 35607

Theoretical pI: Translated: 8.02; Mature: 8.02

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTDHLPDAQALLAFDALVRRGSFTAAAEELDCTKSRVSQLVKALEKQFGTVLVLRNTRR
CCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCE
VALTETGQRLAVHARELRSLLERARIDINEAEGEVSGPLVISSITSFAQYLLAPILAELA
EEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
VLHPCLQLKLQVENRLQDPIAEGLDFCIRTRNVHDDALVAKPLGLVREWAFASPDYLAKA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHCCC
PPLATPDDLPLHRILLDTSRPKLRDTPEWLLEKDGQQKQVRVQPVLSSHQYAPLLSAAIA
CCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHCCCCCCCCEEEHHHHCCCCHHHHHHHHHC
GSGVALLPAYVASEHLRSGRLVPVLPGWSHDCWPVYLVYPYRHPLPRKYEAFIQHVVPRM
CCCHHHHHHHHHHHHHHCCCEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHH
RALLEAGIDPGQGGIRPSSPE
HHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MRTDHLPDAQALLAFDALVRRGSFTAAAEELDCTKSRVSQLVKALEKQFGTVLVLRNTRR
CCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCE
VALTETGQRLAVHARELRSLLERARIDINEAEGEVSGPLVISSITSFAQYLLAPILAELA
EEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
VLHPCLQLKLQVENRLQDPIAEGLDFCIRTRNVHDDALVAKPLGLVREWAFASPDYLAKA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHCCC
PPLATPDDLPLHRILLDTSRPKLRDTPEWLLEKDGQQKQVRVQPVLSSHQYAPLLSAAIA
CCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHCCCCCCCCEEEHHHHCCCCHHHHHHHHHC
GSGVALLPAYVASEHLRSGRLVPVLPGWSHDCWPVYLVYPYRHPLPRKYEAFIQHVVPRM
CCCHHHHHHHHHHHHHHCCCEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHH
RALLEAGIDPGQGGIRPSSPE
HHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]